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MELO3C031503 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C031503
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr05:22810531..22811395
RNA-Seq ExpressionMELO3C031503
SyntenyMELO3C031503
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045643.1 retrotransposon protein [Cucumis melo var. makuwa]2.6e-5664.21Show/hide
Query:  MIHESDLVCRQSTHMDRRTFVILCHLLRTVAGLSLTEIVDVEEMVAMFLHILMYDVKNR-------------------NFLGALDRTYIKVNVPAADRLT
        MIHESDLVCRQST MDRRTF ILCHLLR VAGLS TEIVDVEEMVAMFLH+L +DVKNR                   N LGALD  YIKVNVPA DR T
Subjt:  MIHESDLVCRQSTHMDRRTFVILCHLLRTVAGLSLTEIVDVEEMVAMFLHILMYDVKNR-------------------NFLGALDRTYIKVNVPAADRLT

Query:  FRMRKREITTNVLGVCNTKEDFVYVLAGWEDP----------------------YYYLCNVGYPNAEEFFAPYRGQRYHLQKWRDVGNAP
        FR RK EI TNVLGVC+TK DFVYVLAGWE                        YYYLC+ GYPNAE F APYRGQRYHLQ+WR   NAP
Subjt:  FRMRKREITTNVLGVCNTKEDFVYVLAGWEDP----------------------YYYLCNVGYPNAEEFFAPYRGQRYHLQKWRDVGNAP

KAA0047012.1 retrotransposon protein [Cucumis melo var. makuwa]3.4e-5663.68Show/hide
Query:  MIHESDLVCRQSTHMDRRTFVILCHLLRTVAGLSLTEIVDVEEMVAMFLHILMYDVKNR-------------------NFLGALDRTYIKVNVPAADRLT
        MIHESDLVCRQST MDRRTF ILCHLLR VAGLS TEIVDVEEMVAMFLH+L +DVKNR                   N LGALD TYIKVNVPA DR T
Subjt:  MIHESDLVCRQSTHMDRRTFVILCHLLRTVAGLSLTEIVDVEEMVAMFLHILMYDVKNR-------------------NFLGALDRTYIKVNVPAADRLT

Query:  FRMRKREITTNVLGVCNTKEDFVYVLAGWEDP----------------------YYYLCNVGYPNAEEFFAPYRGQRYHLQKWRDVGNAP
        FR RK E+ TNVLGVC+TK DFVYVLAGWE                        YYYLC+ GYPNAEEF   YRGQRYHLQ+WR   NAP
Subjt:  FRMRKREITTNVLGVCNTKEDFVYVLAGWEDP----------------------YYYLCNVGYPNAEEFFAPYRGQRYHLQKWRDVGNAP

KAA0063060.1 retrotransposon protein [Cucumis melo var. makuwa]5.2e-5763.73Show/hide
Query:  MIHESDLVCRQSTHMDRRTFVILCHLLRTVAGLSLTEIVDVEEMVAMFLHILMYDVKNR----------------------NFLGALDRTYIKVNVPAAD
        MIHESDLVCRQST MDRRTF ILCHLLR VAGLS TEIVDVEEM+AMFLH+L +DVKNR                      N LGALD TYIKVNVPA D
Subjt:  MIHESDLVCRQSTHMDRRTFVILCHLLRTVAGLSLTEIVDVEEMVAMFLHILMYDVKNR----------------------NFLGALDRTYIKVNVPAAD

Query:  RLTFRMRKREITTNVLGVCNTKEDFVYVLAGWEDP----------------------YYYLCNVGYPNAEEFFAPYRGQRYHLQKWRDVGNAP
        R TFR RK EI TNVLGVC+TKEDFVYVLAGWE                        YYYLC+ GYPNAE F APYRGQRYHLQ+WR   NAP
Subjt:  RLTFRMRKREITTNVLGVCNTKEDFVYVLAGWEDP----------------------YYYLCNVGYPNAEEFFAPYRGQRYHLQKWRDVGNAP

KAA0067988.1 retrotransposon protein [Cucumis melo var. makuwa]8.9e-5762.31Show/hide
Query:  MIHESDLVCRQSTHMDRRTFVILCHLLRTVAGLSLTEIVDVEEMVAMFLHILMYDVKNR----------------------------NFLGALDRTYIKV
        MIHESDLVCRQST MDRRTF ILCHLLR VAGLS TEIVDVEEMVAMFLH+L +DVKNR                            N LGALDRTYIKV
Subjt:  MIHESDLVCRQSTHMDRRTFVILCHLLRTVAGLSLTEIVDVEEMVAMFLHILMYDVKNR----------------------------NFLGALDRTYIKV

Query:  NVPAADRLTFRMRKREITTNVLGVCNTKEDFVYVLAGWEDP----------------------YYYLCNVGYPNAEEFFAPYRGQRYHLQKWRDVGNAP
        NVPA DR TFR RK EI TNVLGVC+TK DFVYVLAGWE                        YYYLC+ GYPNAE F APYRGQRYHLQ+WR   NAP
Subjt:  NVPAADRLTFRMRKREITTNVLGVCNTKEDFVYVLAGWEDP----------------------YYYLCNVGYPNAEEFFAPYRGQRYHLQKWRDVGNAP

TYJ97297.1 retrotransposon protein [Cucumis melo var. makuwa]8.9e-5767.8Show/hide
Query:  MIHESDLVCRQSTHMDRRTFVILCHLLRTVAGLSLTEIVDVEEMVAMFLHILMYDVKNR------NFLGALDRTYIKVNVPAADRLTFRMRKREITTNVL
        MI+ESDLVCRQST MDRRTF ILCHLLR VAGLS TEIVDVEEMVAMFLH+L +DVKNR      N LGALD TYIKVNVPA DR TFR RK EI TN L
Subjt:  MIHESDLVCRQSTHMDRRTFVILCHLLRTVAGLSLTEIVDVEEMVAMFLHILMYDVKNR------NFLGALDRTYIKVNVPAADRLTFRMRKREITTNVL

Query:  GVCNTKEDFVYVLAGWEDP----------------------YYYLCNVGYPNAEEFFAPYRGQRYHLQKWRDVGNAP
        GVC+TK DFVYVL+GWE                        YYYLC+ GYPNAE F APYRGQRYHLQ+WR   NAP
Subjt:  GVCNTKEDFVYVLAGWEDP----------------------YYYLCNVGYPNAEEFFAPYRGQRYHLQKWRDVGNAP

TrEMBL top hitse value%identityAlignment
A0A5A7TQ24 Retrotransposon protein1.2e-5664.21Show/hide
Query:  MIHESDLVCRQSTHMDRRTFVILCHLLRTVAGLSLTEIVDVEEMVAMFLHILMYDVKNR-------------------NFLGALDRTYIKVNVPAADRLT
        MIHESDLVCRQST MDRRTF ILCHLLR VAGLS TEIVDVEEMVAMFLH+L +DVKNR                   N LGALD  YIKVNVPA DR T
Subjt:  MIHESDLVCRQSTHMDRRTFVILCHLLRTVAGLSLTEIVDVEEMVAMFLHILMYDVKNR-------------------NFLGALDRTYIKVNVPAADRLT

Query:  FRMRKREITTNVLGVCNTKEDFVYVLAGWEDP----------------------YYYLCNVGYPNAEEFFAPYRGQRYHLQKWRDVGNAP
        FR RK EI TNVLGVC+TK DFVYVLAGWE                        YYYLC+ GYPNAE F APYRGQRYHLQ+WR   NAP
Subjt:  FRMRKREITTNVLGVCNTKEDFVYVLAGWEDP----------------------YYYLCNVGYPNAEEFFAPYRGQRYHLQKWRDVGNAP

A0A5A7V738 Retrotransposon protein2.5e-5763.73Show/hide
Query:  MIHESDLVCRQSTHMDRRTFVILCHLLRTVAGLSLTEIVDVEEMVAMFLHILMYDVKNR----------------------NFLGALDRTYIKVNVPAAD
        MIHESDLVCRQST MDRRTF ILCHLLR VAGLS TEIVDVEEM+AMFLH+L +DVKNR                      N LGALD TYIKVNVPA D
Subjt:  MIHESDLVCRQSTHMDRRTFVILCHLLRTVAGLSLTEIVDVEEMVAMFLHILMYDVKNR----------------------NFLGALDRTYIKVNVPAAD

Query:  RLTFRMRKREITTNVLGVCNTKEDFVYVLAGWEDP----------------------YYYLCNVGYPNAEEFFAPYRGQRYHLQKWRDVGNAP
        R TFR RK EI TNVLGVC+TKEDFVYVLAGWE                        YYYLC+ GYPNAE F APYRGQRYHLQ+WR   NAP
Subjt:  RLTFRMRKREITTNVLGVCNTKEDFVYVLAGWEDP----------------------YYYLCNVGYPNAEEFFAPYRGQRYHLQKWRDVGNAP

A0A5A7VJJ7 Retrotransposon protein4.3e-5762.31Show/hide
Query:  MIHESDLVCRQSTHMDRRTFVILCHLLRTVAGLSLTEIVDVEEMVAMFLHILMYDVKNR----------------------------NFLGALDRTYIKV
        MIHESDLVCRQST MDRRTF ILCHLLR VAGLS TEIVDVEEMVAMFLH+L +DVKNR                            N LGALDRTYIKV
Subjt:  MIHESDLVCRQSTHMDRRTFVILCHLLRTVAGLSLTEIVDVEEMVAMFLHILMYDVKNR----------------------------NFLGALDRTYIKV

Query:  NVPAADRLTFRMRKREITTNVLGVCNTKEDFVYVLAGWEDP----------------------YYYLCNVGYPNAEEFFAPYRGQRYHLQKWRDVGNAP
        NVPA DR TFR RK EI TNVLGVC+TK DFVYVLAGWE                        YYYLC+ GYPNAE F APYRGQRYHLQ+WR   NAP
Subjt:  NVPAADRLTFRMRKREITTNVLGVCNTKEDFVYVLAGWEDP----------------------YYYLCNVGYPNAEEFFAPYRGQRYHLQKWRDVGNAP

A0A5D3BDU5 Retrotransposon protein4.3e-5767.8Show/hide
Query:  MIHESDLVCRQSTHMDRRTFVILCHLLRTVAGLSLTEIVDVEEMVAMFLHILMYDVKNR------NFLGALDRTYIKVNVPAADRLTFRMRKREITTNVL
        MI+ESDLVCRQST MDRRTF ILCHLLR VAGLS TEIVDVEEMVAMFLH+L +DVKNR      N LGALD TYIKVNVPA DR TFR RK EI TN L
Subjt:  MIHESDLVCRQSTHMDRRTFVILCHLLRTVAGLSLTEIVDVEEMVAMFLHILMYDVKNR------NFLGALDRTYIKVNVPAADRLTFRMRKREITTNVL

Query:  GVCNTKEDFVYVLAGWEDP----------------------YYYLCNVGYPNAEEFFAPYRGQRYHLQKWRDVGNAP
        GVC+TK DFVYVL+GWE                        YYYLC+ GYPNAE F APYRGQRYHLQ+WR   NAP
Subjt:  GVCNTKEDFVYVLAGWEDP----------------------YYYLCNVGYPNAEEFFAPYRGQRYHLQKWRDVGNAP

A0A5D3BWV2 Retrotransposon protein1.6e-5672.39Show/hide
Query:  MIHESDLVCRQSTHMDRRTFVILCHLLRTVAGLSLTEIVDVEEMVAMFLHILMYDVKN------RNFLGALDRTYIKVNVPAADRLTFRMRKREITTNVL
        MIHESDLVC+QST MDRRTF ILCHLLR VAGLS TEIVDVEEMVAMFLH+L +DVKN       N LGALD TYIKVNVPA DR TFR RK EI TNVL
Subjt:  MIHESDLVCRQSTHMDRRTFVILCHLLRTVAGLSLTEIVDVEEMVAMFLHILMYDVKN------RNFLGALDRTYIKVNVPAADRLTFRMRKREITTNVL

Query:  GVCNTKEDFVYVLAGWEDP--------YYYLCNVGYPNAEEFFAPYRGQRYHLQKWRDVGNAP
        GVC+TK DFVYVLAGWE          YYYLC+ GYPNAE F    RGQRYHLQ+WR   NAP
Subjt:  GVCNTKEDFVYVLAGWEDP--------YYYLCNVGYPNAEEFFAPYRGQRYHLQKWRDVGNAP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G28950.1 unknown protein3.4e-0641.51Show/hide
Query:  RNFLGALDRTYIKVNVPAADRLTFRMRKREITTNVLGVCNTKEDFVYVLAGWE
        ++ +GA+D T+I   V      +FR RK +I+ N+L  CN   +F+YVL+GWE
Subjt:  RNFLGALDRTYIKVNVPAADRLTFRMRKREITTNVLGVCNTKEDFVYVLAGWE

AT5G35695.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)1.7e-0537.7Show/hide
Query:  FVYVLAGWEDP------------YYYLCNVGYPNAEEFFAPYRGQRYHLQKWRDVGNAPAT
        F+YVL+GWE               +YL + G+ N   F AP+RG RYHLQ++      P T
Subjt:  FVYVLAGWEDP------------YYYLCNVGYPNAEEFFAPYRGQRYHLQKWRDVGNAPAT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATACACGAGTCTGATCTTGTGTGTCGTCAAAGCACGCACATGGACAGGCGAACATTCGTAATTCTATGCCATTTACTCAGGACTGTGGCTGGTCTTTCGTTGACAGA
GATTGTTGATGTTGAGGAAATGGTTGCGATGTTCTTGCACATTCTTATGTATGACGTGAAGAACCGTAATTTCCTTGGGGCATTGGATAGGACGTACATAAAGGTGAATG
TGCCCGCAGCAGATCGCCTTACTTTCAGAATGCGTAAGAGAGAAATTACCACAAATGTACTCGGTGTTTGCAACACGAAAGAGGATTTCGTATATGTCCTCGCTGGTTGG
GAAGATCCATATTACTATCTATGTAATGTGGGTTATCCAAACGCTGAGGAATTTTTCGCCCCATACAGAGGCCAGAGGTACCACTTGCAAAAGTGGCGTGATGTTGGAAA
TGCCCCAGCCACTACTTGCAAGAGTGGCGTGGTGCTGGAAATGCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGATACACGAGTCTGATCTTGTGTGTCGTCAAAGCACGCACATGGACAGGCGAACATTCGTAATTCTATGCCATTTACTCAGGACTGTGGCTGGTCTTTCGTTGACAGA
GATTGTTGATGTTGAGGAAATGGTTGCGATGTTCTTGCACATTCTTATGTATGACGTGAAGAACCGTAATTTCCTTGGGGCATTGGATAGGACGTACATAAAGGTGAATG
TGCCCGCAGCAGATCGCCTTACTTTCAGAATGCGTAAGAGAGAAATTACCACAAATGTACTCGGTGTTTGCAACACGAAAGAGGATTTCGTATATGTCCTCGCTGGTTGG
GAAGATCCATATTACTATCTATGTAATGTGGGTTATCCAAACGCTGAGGAATTTTTCGCCCCATACAGAGGCCAGAGGTACCACTTGCAAAAGTGGCGTGATGTTGGAAA
TGCCCCAGCCACTACTTGCAAGAGTGGCGTGGTGCTGGAAATGCTCTAA
Protein sequenceShow/hide protein sequence
MIHESDLVCRQSTHMDRRTFVILCHLLRTVAGLSLTEIVDVEEMVAMFLHILMYDVKNRNFLGALDRTYIKVNVPAADRLTFRMRKREITTNVLGVCNTKEDFVYVLAGW
EDPYYYLCNVGYPNAEEFFAPYRGQRYHLQKWRDVGNAPATTCKSGVVLEML