CuGenDBv2

Gene ID	MELO3C031636
Organism	Cucumis melo DHL92 (Melon (DHL92) v4)
Description	50S ribosomal protein L2, chloroplastic
Genome location	chr12:907760..908815
RNA-Seq Expression	MELO3C031636
Synteny	MELO3C031636
Gene Ontology terms	GO:0002181 - cytoplasmic translation (biological process) GO:0005739 - mitochondrion (cellular component) GO:0009507 - chloroplast (cellular component) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0016740 - transferase activity (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR002171 - Ribosomal protein L2 IPR012340 - Nucleic acid-binding, OB-fold IPR022666 - Ribosomal Proteins L2, RNA binding domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0064006.1 ribosomal protein L2 [Cucumis melo var. makuwa]

4.2e-33

97.18

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Query:  MTIHLYKTSSPSPSCNGAVDNPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISFGMKKTYMVES
        M IHLYKTSSPSPSCNGAVDNPRKNWIYGQHRCGKGRNARGIITA HRGGGHKRLYRPISFGMKKTYMVES
Subjt:  MTIHLYKTSSPSPSCNGAVDNPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISFGMKKTYMVES

YP_009049660.1 hypothetical protein [Capsicum annuum]

3.0e-23

77.5

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Query:  PFRKKRTEIKILNSMTIHLYKTSSPSPSCNGAVD-----NPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISF
        P RKKRT IKILNSM IHLYKTS+PS + NG VD     NPR N IYGQHRCGKGRNARGIITA HRGGGHKRLYR I F
Subjt:  PFRKKRTEIKILNSMTIHLYKTSSPSPSCNGAVD-----NPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISF

YP_009556542.1 ribosomal protein L2 [Rhabdodendron amazonicum]

7.9e-24

78.75

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Query:  PFRKKRTEIKILNSMTIHLYKTSSPSPSCNGAVD-----NPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISF
        P RKKRTEIKILNSM IHLYKTS+PS + NGAVD     NPR N IYGQ RCGKGRNARGIITA HRGGGHKRLYR I F
Subjt:  PFRKKRTEIKILNSMTIHLYKTSSPSPSCNGAVD-----NPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISF

YP_009572481.1 ribosomal protein L23 [Nyctaginia capitata]

2.3e-23

77.5

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Query:  PFRKKRTEIKILNSMTIHLYKTSSPSPSCNGAVD-----NPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISF
        P RKKRTEIKILNSM IHLYKTS+P  + NGAVD     NPR N IYGQ RCGKGRNARGIITA HRGGGHKRLYR I F
Subjt:  PFRKKRTEIKILNSMTIHLYKTSSPSPSCNGAVD-----NPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISF

YP_009776948.1 ribosomal protein L23 [Boerhavia diffusa]

7.9e-24

78.75

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Query:  PFRKKRTEIKILNSMTIHLYKTSSPSPSCNGAVD-----NPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISF
        P RKKRTEIKILNSM IHLYKTS+PS + NGAVD     NPR N IYGQ RCGKGRNARGIITA HRGGGHKRLYR I F
Subjt:  PFRKKRTEIKILNSMTIHLYKTSSPSPSCNGAVD-----NPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISF

TrEMBL top hits

e value

%identity

Alignment

A0A075VSL0 50S ribosomal protein L2, chloroplastic

1.5e-23

77.5

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Query:  PFRKKRTEIKILNSMTIHLYKTSSPSPSCNGAVD-----NPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISF
        P RKKRT IKILNSM IHLYKTS+PS + NG VD     NPR N IYGQHRCGKGRNARGIITA HRGGGHKRLYR I F
Subjt:  PFRKKRTEIKILNSMTIHLYKTSSPSPSCNGAVD-----NPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISF

A0A411K5D6 Ribosomal protein L2

3.8e-24

78.75

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Query:  PFRKKRTEIKILNSMTIHLYKTSSPSPSCNGAVD-----NPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISF
        P RKKRTEIKILNSM IHLYKTS+PS + NGAVD     NPR N IYGQ RCGKGRNARGIITA HRGGGHKRLYR I F
Subjt:  PFRKKRTEIKILNSMTIHLYKTSSPSPSCNGAVD-----NPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISF

A0A411L541 Multifunctional fusion protein

1.1e-23

77.5

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Query:  PFRKKRTEIKILNSMTIHLYKTSSPSPSCNGAVD-----NPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISF
        P RKKRTEIKILNSM IHLYKTS+P  + NGAVD     NPR N IYGQ RCGKGRNARGIITA HRGGGHKRLYR I F
Subjt:  PFRKKRTEIKILNSMTIHLYKTSSPSPSCNGAVD-----NPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISF

A0A5A7VC43 Ribosomal protein L2 (Chloroplast)

2.0e-33

97.18

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Query:  MTIHLYKTSSPSPSCNGAVDNPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISFGMKKTYMVES
        M IHLYKTSSPSPSCNGAVDNPRKNWIYGQHRCGKGRNARGIITA HRGGGHKRLYRPISFGMKKTYMVES
Subjt:  MTIHLYKTSSPSPSCNGAVDNPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISFGMKKTYMVES

A0A6H1YGK8 Multifunctional fusion protein

3.8e-24

78.75

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Query:  PFRKKRTEIKILNSMTIHLYKTSSPSPSCNGAVD-----NPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISF
        P RKKRTEIKILNSM IHLYKTS+PS + NGAVD     NPR N IYGQ RCGKGRNARGIITA HRGGGHKRLYR I F
Subjt:  PFRKKRTEIKILNSMTIHLYKTSSPSPSCNGAVD-----NPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISF

SwissProt top hits

e value

%identity

Alignment

A4QJF6 50S ribosomal protein L2, chloroplastic

2.5e-20

77.27

Show/hide

Query:  MTIHLYKTSSPSPSCNGAVD-----NPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISF
        M IHLYKTS+PS + NGAVD     NPR N IYGQHRCGKGRNARGIITA HRGGGHKRLYR I F
Subjt:  MTIHLYKTSSPSPSCNGAVD-----NPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISF

A4QJP0 50S ribosomal protein L2, chloroplastic

2.5e-20

77.27

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Query:  MTIHLYKTSSPSPSCNGAVD-----NPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISF
        M IHLYKTS+PS + NGAVD     NPR N IYGQHRCGKGRNARGIITA HRGGGHKRLYR I F
Subjt:  MTIHLYKTSSPSPSCNGAVD-----NPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISF

P60406 50S ribosomal protein L2, chloroplastic

6.5e-21

78.79

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Query:  MTIHLYKTSSPSPSCNGAVD-----NPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISF
        M IHLYKTS+PS + NGAVD     NPRKN IYGQHRCGKGRNARGIITA HRGGGHKRLYR I F
Subjt:  MTIHLYKTSSPSPSCNGAVD-----NPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISF

Q09FY3 50S ribosomal protein L2, chloroplastic

1.4e-20

74.29

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Query:  MTIHLYKTSSPSPSCNGAVD-----NPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISFGMKK
        M IHLYKTS+PS + NGAVD     NPR N IYGQHRCGKGRNARGIITA HRGGGHKRLYR I F   K
Subjt:  MTIHLYKTSSPSPSCNGAVD-----NPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISFGMKK

Q09MB2 50S ribosomal protein L2, chloroplastic

2.5e-20

77.27

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Query:  MTIHLYKTSSPSPSCNGAVD-----NPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISF
        M IHLYKTS+PS + NGAVD     NPR N IYGQHRCGKGRNARGIITA HRGGGHKRLYR I F
Subjt:  MTIHLYKTSSPSPSCNGAVD-----NPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISF

Arabidopsis top hits

e value

%identity

Alignment

ATCG00830.1 ribosomal protein L2

7.4e-20

74.24

Show/hide

Query:  MTIHLYKTSSPSPSCNGAVD-----NPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISF
        M IHLYKTS+PS + NGAVD     NPR N I GQH CGKGRNARGIITA HRGGGHKRLYR I F
Subjt:  MTIHLYKTSSPSPSCNGAVD-----NPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISF

ATCG01310.1 ribosomal protein L2

7.4e-20

74.24

Show/hide

Query:  MTIHLYKTSSPSPSCNGAVD-----NPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISF
        M IHLYKTS+PS + NGAVD     NPR N I GQH CGKGRNARGIITA HRGGGHKRLYR I F
Subjt:  MTIHLYKTSSPSPSCNGAVD-----NPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISF

Sequences

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CDS sequence

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ATGACTTATAACGAAGTGGTCCGGAGGACTATTCGACCTATTCCTTTTAGAAAGAAAAGAACTGAAATCAAAATACTGAATAGCATGACGATACATTTATACAAA
ACTTCTAGCCCGAGCCCGAGTTGCAATGGAGCCGTAGACAATCCACGAAAGAATTGGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATC
ATTACTGCAGTGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTCCAATCTCTTTTGGAATGAAAAAGACATATATGGTAGAATCGTAA

mRNA sequence

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GGTGTCAAGATAATAGCTATGAATAGTCATTGACTTCCGAAAAAGGGTAGAAGAATGAGACCTATTATGGAACATACAATGCATTACAGACGTGAATATGGAATG
TCATGACTTATAACGAAGTGGTCCGGAGGACTATTCGACCTATTCCTTTTAGAAAGAAAAGAACTGAAATCAAAATACTGAATAGCATGACGATACATTTATACA
AAACTTCTAGCCCGAGCCCGAGTTGCAATGGAGCCGTAGACAATCCACGAAAGAATTGGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAA
TCATTACTGCAGTGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTCCAATCTCTTTTGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACGA
CCCTAATCGAAATGAATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGAGATATTTGACATCCCAGAGGGGCTATAATTGGTGATACCATTCTTTCTGG
TATAGAAGTTCCTATCAAAATGGGAAATACCCTACTGGTCTAAACTATTGATTTACATAATTGGAAGTAACCAATTAGGTTGACGATAAAACCTAGAAATCGATC
ACTGATCCAATTTGAGTACCTCCACAGGATAGACCTCAACAGAAAACTGAAGAGTAACGGCAGCAAGTGATTGAGTTCAGTAGTTCCTCATATCAAATTATTGAC
TCTAGAGATATAGTAATATGGAGAAGACTAAATTGTTTCAAGCACCGACAGAACCAGAAGCGTCCCTTGTTTCAAAGAGAGGAGGACTTTCATTGACATTTGATG
GTCAGAGGCAAATTGAAAGCTAAGCAGTGGTAATTCTAAGGATTCCTGAAGGAAAAAAGAGAGATGTCTCCTACATTGCTCGTAATATGTGGAAGTATCGACGTC
ATTTCATAGAGTCATTCGGTCTGAATGCTACATGAGAACATAAGCCAGATGAAGGAACGGGAAGACCTAGGATGTAGAAGATCATAACATGAGTGATTCGGCAGA
TTTGGA

Protein sequence

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MTYNEVVRRTIRPIPFRKKRTEIKILNSMTIHLYKTSSPSPSCNGAVDNPRKNWIYGQHRCGKGRNARGIITAVHRGGGHKRLYRPISFGMKKTYMVES

MELO3C031636 (gene) of Melon (DHL92) v4 genome