CuGenDBv2

Gene ID	MELO3C031641
Organism	Cucumis melo DHL92 (Melon (DHL92) v4)
Description	Photosystem II protein D1
Genome location	chr06:7097670..7098181
RNA-Seq Expression	MELO3C031641
Synteny	MELO3C031641
Gene Ontology terms	GO:0009635 - response to herbicide (biological process) GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005506 - iron ion binding (molecular function) GO:0010242 - oxygen evolving activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domains	IPR000484 - Photosynthetic reaction centre, L/M IPR036854 - Photosystem II protein D1/D2 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

ADY76075.1 PsbA [Kirengeshoma palmata]

2.7e-42

96.74

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Query:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
        MGRE ELSFRLGM PWIVV YSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
Subjt:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL

AGL78812.1 photosystem II D1 protein, partial [uncultured organism]

2.1e-42

94.57

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Query:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
        MGRE ELSFRLGM PWI VPYSAPVAAATAVF++YPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
Subjt:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL

P13910.2 RecName: Full=Photosystem II protein D1; Short=PSII D1 protein; AltName: Full=Photosystem II Q(B) protein; Flags: Precursor [Vicia faba]

2.7e-42

96.74

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Query:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
        MGRE ELSFRLGM PWIVV YSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
Subjt:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL

PHT29345.1 Photosystem II protein D1 [Capsicum baccatum]

2.7e-42

96.74

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Query:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
        MGRE ELSFRLGM PWIVV YSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
Subjt:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL

RHN80992.1 Photosystem II protein D1 [Medicago truncatula]

2.7e-42

96.74

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Query:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
        MGRE ELSFRLGM PWIVV YSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
Subjt:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL

TrEMBL top hits

e value

%identity

Alignment

A0A287JQB8 Photosystem II protein D1

5.8e-43

95.65

Show/hide

Query:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
        MGRECELSFRLGM PWI V YS PVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
Subjt:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL

A0A2G2V8M4 Photosystem II protein D1

1.3e-42

96.74

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Query:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
        MGRE ELSFRLGM PWIVV YSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
Subjt:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL

A0A396JTX5 Photosystem II protein D1

1.3e-42

96.74

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Query:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
        MGRE ELSFRLGM PWIVV YSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
Subjt:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL

F1KC07 Photosystem II protein D1

1.3e-42

96.74

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Query:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
        MGRE ELSFRLGM PWIVV YSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
Subjt:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL

R4R4V0 Photosystem II D1 protein (Fragment)

9.9e-43

94.57

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Query:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
        MGRE ELSFRLGM PWI VPYSAPVAAATAVF++YPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
Subjt:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL

SwissProt top hits

e value

%identity

Alignment

A1E9Y8 Photosystem II protein D1

1.0e-44

95.65

Show/hide

Query:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
        MGRE ELSFRLGM PWI V YSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
Subjt:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL

A4QJ96 Photosystem II protein D1

1.0e-44

95.65

Show/hide

Query:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
        MGRE ELSFRLGM PWI V YSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
Subjt:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL

A4QJI0 Photosystem II protein D1

1.0e-44

95.65

Show/hide

Query:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
        MGRE ELSFRLGM PWI V YSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
Subjt:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL

P13910 Photosystem II protein D1

3.5e-45

96.74

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Query:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
        MGRE ELSFRLGM PWIVV YSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
Subjt:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL

Q3V554 Photosystem II protein D1

1.0e-44

95.65

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Query:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
        MGRE ELSFRLGM PWI V YSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
Subjt:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL

Arabidopsis top hits

e value

%identity

Alignment

ATCG00020.1 photosystem II reaction center protein A

7.3e-46

95.65

Show/hide

Query:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
        MGRE ELSFRLGM PWI V YSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL
Subjt:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL

ATCG00270.1 photosystem II reaction center protein D

1.2e-16

40.66

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Query:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGS
        M R+ EL+  + + P+  + +S P+A   +VFLIYP+GQ  +      G++  F F++ FQ  HN  ++PFHM+GVAGV G +L  A+HG+
Subjt:  MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGS

Sequences

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CDS sequence

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ATGGGTCGAGAGTGTGAACTGAGTTTCCGTCTGGGTATGCATCCTTGGATTGTTGTTCCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTAC
CCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCA
TTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTG

mRNA sequence

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CTTTCAATTCTAAGCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAAGAATCGTCCCATTATCCAAGGGACTTCGAAGAT
AGGTCGGGTTGCACTTTTACCCGAAAGCAGCTTCCGTTGATGAATGGTTATAGAATGGTGGTCCTTATGAGCTAATGGTTCTAGACTTCTGACTTGGTGTAGCAT
CTGACATGGGTCGAGAGTGTGAACTGAGTTTCCGTCTGGGTATGCATCCTTGGATTGTTGTTCCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGA
TCTACCCAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGC
ACCCATTCCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTG

Protein sequence

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MGRECELSFRLGMHPWIVVPYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSL

MELO3C031641 (gene) of Melon (DHL92) v4 genome