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MELO3C031843 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C031843
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr05:21233687..21238354
RNA-Seq ExpressionMELO3C031843
SyntenyMELO3C031843
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CDF77009.1 hypothetical transposable element-related protein, partial [Boechera divaricarpa]3.1e-0551.92Show/hide
Query:  FDMKDCAPGDTSVAKSDKFHLGQCPETTLEIKEMHKVISMLSIHTLIYVIEC
        F M DC PGDT VAK DKF L QCP+  LEI+EM K+    ++ +L+Y   C
Subjt:  FDMKDCAPGDTSVAKSDKFHLGQCPETTLEIKEMHKVISMLSIHTLIYVIEC

KAA0052009.1 putative transposable element-related protein [Cucumis melo var. makuwa]2.3e-0864Show/hide
Query:  MKDCAPGDTSVAKSDKFHLGQCPETTLEIKEMHKVISMLSIHTLIYVIEC
        MKDCAPGDT VAK DKF+ GQCP+TTLEIKEM KV    ++ +L+Y   C
Subjt:  MKDCAPGDTSVAKSDKFHLGQCPETTLEIKEMHKVISMLSIHTLIYVIEC

RVW98913.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]4.0e-0550Show/hide
Query:  FDMKDCAPGDTSVAKSDKFHLGQCPETTLEIKEMHKVISMLSIHTLIYVIEC
        F M +CAPGDT VAK DKF L QCP+  LE K+M + +  L++ +L+Y   C
Subjt:  FDMKDCAPGDTSVAKSDKFHLGQCPETTLEIKEMHKVISMLSIHTLIYVIEC

RWR91636.1 hypothetical protein CKAN_02080200 [Cinnamomum micranthum f. kanehirae]1.6e-0650Show/hide
Query:  FDMKDCAPGDTSVAKSDKFHLGQCPETTLEIKEMHKVISMLSIHTLIYVIEC
        F M+DC PGDT V+K DKF L QCP+T+LE++EM K+    ++ +L+Y + C
Subjt:  FDMKDCAPGDTSVAKSDKFHLGQCPETTLEIKEMHKVISMLSIHTLIYVIEC

VVV77353.1 unnamed protein product, partial [Nymphaea colorata]2.4e-0553.06Show/hide
Query:  FDMKDCAPGDTSVAKSDKFHLGQCPETTLEIKEMHKVISMLSIHTLIYV
        +DMKDC PGDT VAK DKF L QCP++ +E KEM  +  +  + +L+YV
Subjt:  FDMKDCAPGDTSVAKSDKFHLGQCPETTLEIKEMHKVISMLSIHTLIYV

TrEMBL top hitse value%identityAlignment
A0A438IQC0 Retrovirus-related Pol polyprotein from transposon TNT 1-941.9e-0550Show/hide
Query:  FDMKDCAPGDTSVAKSDKFHLGQCPETTLEIKEMHKVISMLSIHTLIYVIEC
        F M +CAPGDT VAK DKF L QCP+  LE K+M + +  L++ +L+Y   C
Subjt:  FDMKDCAPGDTSVAKSDKFHLGQCPETTLEIKEMHKVISMLSIHTLIYVIEC

A0A443PLH5 Uncharacterized protein7.9e-0750Show/hide
Query:  FDMKDCAPGDTSVAKSDKFHLGQCPETTLEIKEMHKVISMLSIHTLIYVIEC
        F M+DC PGDT V+K DKF L QCP+T+LE++EM K+    ++ +L+Y + C
Subjt:  FDMKDCAPGDTSVAKSDKFHLGQCPETTLEIKEMHKVISMLSIHTLIYVIEC

A0A5A7UEX9 Putative transposable element-related protein1.1e-0864Show/hide
Query:  MKDCAPGDTSVAKSDKFHLGQCPETTLEIKEMHKVISMLSIHTLIYVIEC
        MKDCAPGDT VAK DKF+ GQCP+TTLEIKEM KV    ++ +L+Y   C
Subjt:  MKDCAPGDTSVAKSDKFHLGQCPETTLEIKEMHKVISMLSIHTLIYVIEC

A0A5K0YL61 Uncharacterized protein (Fragment)1.1e-0553.06Show/hide
Query:  FDMKDCAPGDTSVAKSDKFHLGQCPETTLEIKEMHKVISMLSIHTLIYV
        +DMKDC PGDT VAK DKF L QCP++ +E KEM  +  +  + +L+YV
Subjt:  FDMKDCAPGDTSVAKSDKFHLGQCPETTLEIKEMHKVISMLSIHTLIYV

V5ZTC4 Hypothetical transposable element-related protein (Fragment)1.5e-0551.92Show/hide
Query:  FDMKDCAPGDTSVAKSDKFHLGQCPETTLEIKEMHKVISMLSIHTLIYVIEC
        F M DC PGDT VAK DKF L QCP+  LEI+EM K+    ++ +L+Y   C
Subjt:  FDMKDCAPGDTSVAKSDKFHLGQCPETTLEIKEMHKVISMLSIHTLIYVIEC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCTGAACCTTGCATTAAGGATCGATAAACATGCTTCTACTAGAGAACAACCAAATACGGATAATATTGAGATGTGCGAACGGTCAAATCGTATATTTGACATGAA
AGATTGTGCACCAGGAGATACCTCTGTTGCTAAAAGTGATAAATTTCATTTAGGTCAATGCCCCGAGACGACACTTGAGATTAAGGAGATGCATAAGGTAATTTCCATGC
TATCCATCCATACTTTGATCTATGTCATTGAATGTATTGGAATTGGTGATCAAGGAAGGTTTAGTTACAAGGATAGTGACAAAAGCCGCCTTAGTTCCATGCTA
mRNA sequenceShow/hide mRNA sequence
TTTAGTTGGTCTTGCTCAAATATCTGGTAATCTGAGTTCAATCCCTAAGTTGAATGGATCAAATTTCAAGATTTGGAAGTAAAGCTTAGAGATACGTCTCCGGTATATGG
ATCTGAACCTTGCATTAAGGATCGATAAACATGCTTCTACTAGAGAACAACCAAATACGGATAATATTGAGATGTGCGAACGGTCAAATCGTATATTTGACATGAAAGAT
TGTGCACCAGGAGATACCTCTGTTGCTAAAAGTGATAAATTTCATTTAGGTCAATGCCCCGAGACGACACTTGAGATTAAGGAGATGCATAAGGTAATTTCCATGCTATC
CATCCATACTTTGATCTATGTCATTGAATGTATTGGAATTGGTGATCAAGGAAGGTTTAGTTACAAGGATAGTGACAAAAGCCGCCTTAGTTCCATGCTAA
Protein sequenceShow/hide protein sequence
MDLNLALRIDKHASTREQPNTDNIEMCERSNRIFDMKDCAPGDTSVAKSDKFHLGQCPETTLEIKEMHKVISMLSIHTLIYVIECIGIGDQGRFSYKDSDKSRLSSML