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MELO3C031876.jh1 (gene) of Melon (Harukei-3) v1.41 genome

Gene IDMELO3C031876.jh1
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Descriptionhomeobox-leucine zipper protein REVOLUTA-like
Genome locationchr06:27706768..27707971
RNA-Seq ExpressionMELO3C031876.jh1
SyntenyMELO3C031876.jh1
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0030154 - cell differentiation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0008289 - lipid binding (molecular function)
InterPro domainsIPR044830 - Class III homeodomain-leucine zipper family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AFL31307.1 truncated revoluta, partial [Brassica juncea]2.08e-2976Show/hide
Query:  PQHSLRDASSPTGLLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMK
        PQHSLRDA+SP GLLSIAEE L  FLSK T TAV+W QM  MK G DSVGIFAISQ CSGV A+ACGLV+LEP+K
Subjt:  PQHSLRDASSPTGLLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMK

AFO11386.1 revoluta, partial [Brassica rapa subsp. pekinensis]2.14e-2976Show/hide
Query:  PQHSLRDASSPTGLLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMK
        PQHSLRDA+SP GLLSIAEE L  FLSK T TAV+W QM  MK G DSVGIFAISQ CSGV A+ACGLV+LEP+K
Subjt:  PQHSLRDASSPTGLLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMK

AFO11391.1 truncated revoluta, partial [Brassica juncea]2.03e-2976Show/hide
Query:  PQHSLRDASSPTGLLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMK
        PQHSLRDA+SP GLLSIAEE L  FLSK T TAV+W QM  MK G DSVGIFAISQ CSGV A+ACGLV+LEP+K
Subjt:  PQHSLRDASSPTGLLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMK

KAA0060694.1 revoluta [Cucumis melo var. makuwa]5.73e-4493.1Show/hide
Query:  MPQHSLRDASSPTG---LLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMKESMLILMI
        MP HSLRDASSPTG   LLSIAEEILVAFLSKTTETAVNWDQMH MK GLDSVGIFAISQSCSGVVAQACGLVNLEPMKESMLILMI
Subjt:  MPQHSLRDASSPTG---LLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMKESMLILMI

TYK03299.1 revoluta [Cucumis melo var. makuwa]1.21e-4594.25Show/hide
Query:  MPQHSLRDASSPTG---LLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMKESMLILMI
        MP HSLRDASSPTG   LLSIAEEILVAFLSKTTETAVNWDQMH MKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMKESMLILMI
Subjt:  MPQHSLRDASSPTG---LLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMKESMLILMI

TrEMBL top hitse value%identityAlignment
A0A5A7V060 Revoluta2.78e-4493.1Show/hide
Query:  MPQHSLRDASSPTG---LLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMKESMLILMI
        MP HSLRDASSPTG   LLSIAEEILVAFLSKTTETAVNWDQMH MK GLDSVGIFAISQSCSGVVAQACGLVNLEPMKESMLILMI
Subjt:  MPQHSLRDASSPTG---LLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMKESMLILMI

A0A5D3BYZ8 Revoluta5.84e-4694.25Show/hide
Query:  MPQHSLRDASSPTG---LLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMKESMLILMI
        MP HSLRDASSPTG   LLSIAEEILVAFLSKTTETAVNWDQMH MKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMKESMLILMI
Subjt:  MPQHSLRDASSPTG---LLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMKESMLILMI

I7AAT2 Truncated revoluta (Fragment)9.80e-3076Show/hide
Query:  PQHSLRDASSPTGLLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMK
        PQHSLRDA+SP GLLSIAEE L  FLSK T TAV+W QM  MK G DSVGIFAISQ CSGV A+ACGLV+LEP+K
Subjt:  PQHSLRDASSPTGLLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMK

I7B8W1 Revoluta (Fragment)1.04e-2976Show/hide
Query:  PQHSLRDASSPTGLLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMK
        PQHSLRDA+SP GLLSIAEE L  FLSK T TAV+W QM  MK G DSVGIFAISQ CSGV A+ACGLV+LEP+K
Subjt:  PQHSLRDASSPTGLLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMK

S4SAV4 Truncated revoluta (Fragment)1.01e-2976Show/hide
Query:  PQHSLRDASSPTGLLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMK
        PQHSLRDA+SP GLLSIAEE L  FLSK T TAV+W QM  MK G DSVGIFAISQ CSGV A+ACGLV+LEP+K
Subjt:  PQHSLRDASSPTGLLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMK

SwissProt top hitse value%identityAlignment
A2XBL9 Homeobox-leucine zipper protein HOX105.5e-2169.33Show/hide
Query:  PQHSLRDASSPTGLLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMK
        PQ+ LRDAS+P+GLLSIAEE L  FLSK T TA++W QM  MK G DSVGI AIS  C GV A+ACGLVNLEP K
Subjt:  PQHSLRDASSPTGLLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMK

A2Z8L4 Homeobox-leucine zipper protein HOX92.3e-1965.33Show/hide
Query:  PQHSLRDASSPTGLLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMK
        PQ+ LRDAS+P+GLL+IAEE L  FLSK T TAV+W  M  MK G DS GI A+S  C GV A+ACGLVNLEP K
Subjt:  PQHSLRDASSPTGLLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMK

O04291 Homeobox-leucine zipper protein ATHB-141.9e-2163.75Show/hide
Query:  PQHSLRDASSPTGLLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMKESMLI
        PQH  RDA++P GLLSIAEE L  FLSK T TAV+W QM  MK G DS+GI AIS++CSG+ A+ACGLV+LEPMK + ++
Subjt:  PQHSLRDASSPTGLLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMKESMLI

Q6TAQ6 Homeobox-leucine zipper protein HOX105.5e-2169.33Show/hide
Query:  PQHSLRDASSPTGLLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMK
        PQ+ LRDAS+P+GLLSIAEE L  FLSK T TA++W QM  MK G DSVGI AIS  C GV A+ACGLVNLEP K
Subjt:  PQHSLRDASSPTGLLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMK

Q9SE43 Homeobox-leucine zipper protein REVOLUTA5.3e-2476Show/hide
Query:  PQHSLRDASSPTGLLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMK
        PQHSLRDA+SP GLLSIAEE L  FLSK T TAV+W QM  MK G DSVGIFAISQ C+GV A+ACGLV+LEPMK
Subjt:  PQHSLRDASSPTGLLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMK

Arabidopsis top hitse value%identityAlignment
AT1G30490.1 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein8.2e-2058.23Show/hide
Query:  QHSLRDASSPTGLLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMKESMLI
        QH  RD ++P  LLSIAEE L  FL K T TAV+W QM  MK G DS+GI A+S++CSG+ A+ACGLV+LEPMK + ++
Subjt:  QHSLRDASSPTGLLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMKESMLI

AT1G52150.1 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein2.6e-1860.76Show/hide
Query:  QHSLRDASSPTGLLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMKESMLI
        Q+  RDA SP GLLSIAEE L  FLSK T TAV W QM  MK G DS+GI AIS  C+GV A+ACGLV LEP + + ++
Subjt:  QHSLRDASSPTGLLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMKESMLI

AT2G34710.1 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein1.3e-2263.75Show/hide
Query:  PQHSLRDASSPTGLLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMKESMLI
        PQH  RDA++P GLLSIAEE L  FLSK T TAV+W QM  MK G DS+GI AIS++CSG+ A+ACGLV+LEPMK + ++
Subjt:  PQHSLRDASSPTGLLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMKESMLI

AT4G32880.1 homeobox gene 81.2e-1857.5Show/hide
Query:  PQHSLRDASSPTGLLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMKESMLI
        PQH  RDA SP GLLSIA+E L  F+SK T TAV W QM  MK G DS+GI AIS  C+G+ A+ACGLV L+P + + ++
Subjt:  PQHSLRDASSPTGLLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMKESMLI

AT5G60690.1 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein3.8e-2576Show/hide
Query:  PQHSLRDASSPTGLLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMK
        PQHSLRDA+SP GLLSIAEE L  FLSK T TAV+W QM  MK G DSVGIFAISQ C+GV A+ACGLV+LEPMK
Subjt:  PQHSLRDASSPTGLLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCAGCATTCACTTAGAGATGCTAGTAGCCCTACTGGACTCTTGTCTATTGCAGAGGAGATTTTGGTAGCCTTCTTGTCAAAGACTACAGAAACTGCTGTC
AATTGGGATCAGATGCATTGGATGAAACTTGGTCTGGATTCGGTGGGAATCTTTGCCATTTCACAAAGTTGTAGTGGAGTGGTTGCACAAGCTTGTGGTCTTGTT
AATTTAGAGCCCATGAAGGAAAGCATGCTTATACTAATGATTTAG
mRNA sequenceShow/hide mRNA sequence
AAGGTCTCTGCCACTCTCTCCGCCACACACGACTTCTCTTTGCATCGCCAGCAGCTGGTTCGTGATTGCCCCATTTTAGCCAACATCAAACCCAAGCAGATTAAA
GTCTAGTTCCAAAACCGTAGATGTAGAGAGAAATAAAGAAAAGAGGCTTCTCGTTTACAGTTACTAAATAATAAATTGATGGCCATGGATAAACTGTTGATGGAG
GAAAATGATAGGTTGCAGAAGCAAGTGTCTCAGCTTGTCTGTGAGAATGGGTATATGCACCAAGATTTGCAATAAACTACTAATGAACCACCAGCAACAATTACT
GATGCAAGTTGTGACTCAGGTTGTGACTCAGTGTCTACTATGCCTCAGCATTCACTTAGAGATGCTAGTAGCCCTACTGGACTCTTGTCTATTGCAGAGGAGATT
TTGGTAGCCTTCTTGTCAAAGACTACAGAAACTGCTGTCAATTGGGATCAGATGCATTGGATGAAACTTGGTCTGGATTCGGTGGGAATCTTTGCCATTTCACAA
AGTTGTAGTGGAGTGGTTGCACAAGCTTGTGGTCTTGTTAATTTAGAGCCCATGAAGGAAAGCATGCTTATACTAATGATTTAG
Protein sequenceShow/hide protein sequence
MPQHSLRDASSPTGLLSIAEEILVAFLSKTTETAVNWDQMHWMKLGLDSVGIFAISQSCSGVVAQACGLVNLEPMKESMLILMI