CuGenDBv2

Gene ID	MELO3C032060
Organism	Cucumis melo DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Genome location	chr01:17098647..17100373
RNA-Seq Expression	MELO3C032060
Synteny	MELO3C032060
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036563.1 retrotransposon protein [Cucumis melo var. makuwa]

3.3e-58

85.52

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Query:  MDQQTLLGVLTAFTLAQRQIFLTLELLMNDNRRITHTSFDTRHRIRQLAYFRMIHESDLVSHQSTRMDRRTFAILCHLLRTVFGLSSTKIVDFEEMVAMF
        MDQQT+LG+ T FTLAQRQI LTLELLMNDN+RIT+T  DTRHRIRQLAYFRMIHESDLV  QSTRMDRRTFAILCHLLRTV  LSST+IVD EEMVAMF
Subjt:  MDQQTLLGVLTAFTLAQRQIFLTLELLMNDNRRITHTSFDTRHRIRQLAYFRMIHESDLVSHQSTRMDRRTFAILCHLLRTVFGLSSTKIVDFEEMVAMF

Query:  LHVLAHDVKNHVIQRKFVRSSETVSRHFNLVLLAVIRLYEELIKR
        LHVLAHDVKN VIQR+FVRS ETVS HFNLVLLAV+RLYE+LIKR
Subjt:  LHVLAHDVKNHVIQRKFVRSSETVSRHFNLVLLAVIRLYEELIKR

KAA0043030.1 retrotransposon protein [Cucumis melo var. makuwa]

4.7e-57

82.19

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Query:  MDQQTLLGVLTAFTLAQRQIFLTLELLMNDNRRITHTSFDTRHRIRQLAYFRMIHESDLVSHQSTRMDRRTFAILCHLLRTVFGLSSTKIVDFEEMVAMF
        MDQQTLLG LTAFT+AQRQ+ L LE LMNDN+R+  T +DTRHRIRQLAYFRMIHESDLV  +STRMDRRTF ILCHLLRTV GLSST+IVD EEMVAMF
Subjt:  MDQQTLLGVLTAFTLAQRQIFLTLELLMNDNRRITHTSFDTRHRIRQLAYFRMIHESDLVSHQSTRMDRRTFAILCHLLRTVFGLSSTKIVDFEEMVAMF

Query:  LHVLAHDVKNHVIQRKFVRSSETVSRHFNLVLLAVIRLYEELIKRL
        LHVLAHDVKN VIQR+FVRS ETVSRHFN+VL  V+RLYEELIKRL
Subjt:  LHVLAHDVKNHVIQRKFVRSSETVSRHFNLVLLAVIRLYEELIKRL

KAA0050301.1 retrotransposon protein [Cucumis melo var. makuwa]

6.6e-59

84.83

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Query:  MDQQTLLGVLTAFTLAQRQIFLTLELLMNDNRRITHTSFDTRHRIRQLAYFRMIHESDLVSHQSTRMDRRTFAILCHLLRTVFGLSSTKIVDFEEMVAMF
        M+QQTLLGVLT FTLAQRQI LTLELLMN NRRITHT  DTRHRIRQLAYFRMIHESDLV  QSTRMD+RTFAILCHLLRTV+GLSST+IVD EEMVAMF
Subjt:  MDQQTLLGVLTAFTLAQRQIFLTLELLMNDNRRITHTSFDTRHRIRQLAYFRMIHESDLVSHQSTRMDRRTFAILCHLLRTVFGLSSTKIVDFEEMVAMF

Query:  LHVLAHDVKNHVIQRKFVRSSETVSRHFNLVLLAVIRLYEELIKR
        LHVLA++VKN +IQRKF+RS ET+SRHF LVLLAV+RLYE+LIKR
Subjt:  LHVLAHDVKNHVIQRKFVRSSETVSRHFNLVLLAVIRLYEELIKR

KAA0058874.1 retrotransposon protein [Cucumis melo var. makuwa]

2.5e-58

84.83

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Query:  MDQQTLLGVLTAFTLAQRQIFLTLELLMNDNRRITHTSFDTRHRIRQLAYFRMIHESDLVSHQSTRMDRRTFAILCHLLRTVFGLSSTKIVDFEEMVAMF
        MD+QTL+GVLTAFT AQRQI LTLELLMN+N+R+ HT  DTRHRIR+LAYFRMIHESDLV  QSTRMDRRTFAILCHLLR V GLSST+IVD EEMVAMF
Subjt:  MDQQTLLGVLTAFTLAQRQIFLTLELLMNDNRRITHTSFDTRHRIRQLAYFRMIHESDLVSHQSTRMDRRTFAILCHLLRTVFGLSSTKIVDFEEMVAMF

Query:  LHVLAHDVKNHVIQRKFVRSSETVSRHFNLVLLAVIRLYEELIKR
        LHVLAHDVKN VIQR+FVRS ETVSRHFN+VLLAV+RLYEELIKR
Subjt:  LHVLAHDVKNHVIQRKFVRSSETVSRHFNLVLLAVIRLYEELIKR

XP_016899496.1 PREDICTED: uncharacterized protein LOC107990551 [Cucumis melo]

4.6e-60

88.28

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Query:  MDQQTLLGVLTAFTLAQRQIFLTLELLMNDNRRITHTSFDTRHRIRQLAYFRMIHESDLVSHQSTRMDRRTFAILCHLLRTVFGLSSTKIVDFEEMVAMF
        MDQQTLLGVLTAFTLAQRQI LTLELLMNDNRRIT+T FDT +RIRQLAYFRMIHESDLV  QSTRMDRRTFAILCHLLRTV  LSS +I+D EEMVAMF
Subjt:  MDQQTLLGVLTAFTLAQRQIFLTLELLMNDNRRITHTSFDTRHRIRQLAYFRMIHESDLVSHQSTRMDRRTFAILCHLLRTVFGLSSTKIVDFEEMVAMF

Query:  LHVLAHDVKNHVIQRKFVRSSETVSRHFNLVLLAVIRLYEELIKR
        LHVLAHDVKNHVIQRKFVRS ETVSRHFNLVLL V+RLYE+LIKR
Subjt:  LHVLAHDVKNHVIQRKFVRSSETVSRHFNLVLLAVIRLYEELIKR

TrEMBL top hits

e value

%identity

Alignment

A0A1S4DU32 uncharacterized protein LOC107990551

2.2e-60

88.28

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Query:  MDQQTLLGVLTAFTLAQRQIFLTLELLMNDNRRITHTSFDTRHRIRQLAYFRMIHESDLVSHQSTRMDRRTFAILCHLLRTVFGLSSTKIVDFEEMVAMF
        MDQQTLLGVLTAFTLAQRQI LTLELLMNDNRRIT+T FDT +RIRQLAYFRMIHESDLV  QSTRMDRRTFAILCHLLRTV  LSS +I+D EEMVAMF
Subjt:  MDQQTLLGVLTAFTLAQRQIFLTLELLMNDNRRITHTSFDTRHRIRQLAYFRMIHESDLVSHQSTRMDRRTFAILCHLLRTVFGLSSTKIVDFEEMVAMF

Query:  LHVLAHDVKNHVIQRKFVRSSETVSRHFNLVLLAVIRLYEELIKR
        LHVLAHDVKNHVIQRKFVRS ETVSRHFNLVLL V+RLYE+LIKR
Subjt:  LHVLAHDVKNHVIQRKFVRSSETVSRHFNLVLLAVIRLYEELIKR

A0A5A7T0Z8 Retrotransposon protein

1.6e-58

85.52

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Query:  MDQQTLLGVLTAFTLAQRQIFLTLELLMNDNRRITHTSFDTRHRIRQLAYFRMIHESDLVSHQSTRMDRRTFAILCHLLRTVFGLSSTKIVDFEEMVAMF
        MDQQT+LG+ T FTLAQRQI LTLELLMNDN+RIT+T  DTRHRIRQLAYFRMIHESDLV  QSTRMDRRTFAILCHLLRTV  LSST+IVD EEMVAMF
Subjt:  MDQQTLLGVLTAFTLAQRQIFLTLELLMNDNRRITHTSFDTRHRIRQLAYFRMIHESDLVSHQSTRMDRRTFAILCHLLRTVFGLSSTKIVDFEEMVAMF

Query:  LHVLAHDVKNHVIQRKFVRSSETVSRHFNLVLLAVIRLYEELIKR
        LHVLAHDVKN VIQR+FVRS ETVS HFNLVLLAV+RLYE+LIKR
Subjt:  LHVLAHDVKNHVIQRKFVRSSETVSRHFNLVLLAVIRLYEELIKR

A0A5A7TI78 Retrotransposon protein

2.3e-57

82.19

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Query:  MDQQTLLGVLTAFTLAQRQIFLTLELLMNDNRRITHTSFDTRHRIRQLAYFRMIHESDLVSHQSTRMDRRTFAILCHLLRTVFGLSSTKIVDFEEMVAMF
        MDQQTLLG LTAFT+AQRQ+ L LE LMNDN+R+  T +DTRHRIRQLAYFRMIHESDLV  +STRMDRRTF ILCHLLRTV GLSST+IVD EEMVAMF
Subjt:  MDQQTLLGVLTAFTLAQRQIFLTLELLMNDNRRITHTSFDTRHRIRQLAYFRMIHESDLVSHQSTRMDRRTFAILCHLLRTVFGLSSTKIVDFEEMVAMF

Query:  LHVLAHDVKNHVIQRKFVRSSETVSRHFNLVLLAVIRLYEELIKRL
        LHVLAHDVKN VIQR+FVRS ETVSRHFN+VL  V+RLYEELIKRL
Subjt:  LHVLAHDVKNHVIQRKFVRSSETVSRHFNLVLLAVIRLYEELIKRL

A0A5A7UUT3 Retrotransposon protein

1.2e-58

84.83

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Query:  MDQQTLLGVLTAFTLAQRQIFLTLELLMNDNRRITHTSFDTRHRIRQLAYFRMIHESDLVSHQSTRMDRRTFAILCHLLRTVFGLSSTKIVDFEEMVAMF
        MD+QTL+GVLTAFT AQRQI LTLELLMN+N+R+ HT  DTRHRIR+LAYFRMIHESDLV  QSTRMDRRTFAILCHLLR V GLSST+IVD EEMVAMF
Subjt:  MDQQTLLGVLTAFTLAQRQIFLTLELLMNDNRRITHTSFDTRHRIRQLAYFRMIHESDLVSHQSTRMDRRTFAILCHLLRTVFGLSSTKIVDFEEMVAMF

Query:  LHVLAHDVKNHVIQRKFVRSSETVSRHFNLVLLAVIRLYEELIKR
        LHVLAHDVKN VIQR+FVRS ETVSRHFN+VLLAV+RLYEELIKR
Subjt:  LHVLAHDVKNHVIQRKFVRSSETVSRHFNLVLLAVIRLYEELIKR

A0A5D3BWN8 Retrotransposon protein

3.2e-59

84.83

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Query:  MDQQTLLGVLTAFTLAQRQIFLTLELLMNDNRRITHTSFDTRHRIRQLAYFRMIHESDLVSHQSTRMDRRTFAILCHLLRTVFGLSSTKIVDFEEMVAMF
        M+QQTLLGVLT FTLAQRQI LTLELLMN NRRITHT  DTRHRIRQLAYFRMIHESDLV  QSTRMD+RTFAILCHLLRTV+GLSST+IVD EEMVAMF
Subjt:  MDQQTLLGVLTAFTLAQRQIFLTLELLMNDNRRITHTSFDTRHRIRQLAYFRMIHESDLVSHQSTRMDRRTFAILCHLLRTVFGLSSTKIVDFEEMVAMF

Query:  LHVLAHDVKNHVIQRKFVRSSETVSRHFNLVLLAVIRLYEELIKR
        LHVLA++VKN +IQRKF+RS ET+SRHF LVLLAV+RLYE+LIKR
Subjt:  LHVLAHDVKNHVIQRKFVRSSETVSRHFNLVLLAVIRLYEELIKR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G28730.1 unknown protein

2.6e-05

31.87

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Query:  IHESDLVSHQSTRMDRRTFAILCHLLRTVFGLSSTKIVDFEEMVAMFLHVLAHDVKNHVIQRKFVRSSETVSRHFNLVLLAVIRLYEELIK
        I+ +++      RM    F  LC +L   +GL S+  +  +E VA+FL + A +     I  +F  + ET+ R F+ VL A+ RL  E I+
Subjt:  IHESDLVSHQSTRMDRRTFAILCHLLRTVFGLSSTKIVDFEEMVAMFLHVLAHDVKNHVIQRKFVRSSETVSRHFNLVLLAVIRLYEELIK

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)

3.9e-09

37.8

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Query:  QSTRMDRRTFAILCHLLRTVFGLSSTKIVDFEEMVAMFLHVLAHDVKNHVIQRKFVRSSETVSRHFNLVLLAVIRLYEELIK
        ++ RMD+  F  LC LL+T   L  T  +  E  +A+FL ++ H+++   +Q  F  S ET+SRHFN VL AVI + ++  +
Subjt:  QSTRMDRRTFAILCHLLRTVFGLSSTKIVDFEEMVAMFLHVLAHDVKNHVIQRKFVRSSETVSRHFNLVLLAVIRLYEELIK

Sequences

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CDS sequence

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ATGGATCAACAAACACTCCTTGGCGTCCTAACTGCATTCACGCTGGCCCAACGTCAGATCTTTCTAACGTTGGAGCTACTAATGAACGACAATAGGCGTATCACACATAC
ATCGTTCGATACACGCCATAGAATAAGGCAGCTTGCGTACTTTCGCATGATACACGAGTCAGATCTTGTGTCTCACCAAAGCACGCGAATGGACAGGCGAACTTTCGCAA
TTCTATGTCATTTACTTCGAACTGTATTTGGTCTTTCGTCCACCAAGATTGTCGACTTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTTGCCCATGACGTGAAAAAC
CACGTCATTCAAAGGAAATTTGTACGGTCCAGTGAGACAGTATCGCGACATTTTAACCTTGTACTATTGGCTGTCATCCGACTATACGAGGAGTTGATAAAGAGACTGTT
CCGGTGA

mRNA sequence

Show/hide mRNA sequence

TTACTAAGTTTAGGCTATTAGTAAGTGCGTAATAAGCTTTAATTAGAGATTTTTCACAATGTATATGGATATTGTACTAATTCACTTAGTACATATTTTTTAGGAAACTT
TACATAGTTTGTAATGGATCAACAAACACTCCTTGGCGTCCTAACTGCATTCACGCTGGCCCAACGTCAGATCTTTCTAACGTTGGAGCTACTAATGAACGACAATAGGC
GTATCACACATACATCGTTCGATACACGCCATAGAATAAGGCAGCTTGCGTACTTTCGCATGATACACGAGTCAGATCTTGTGTCTCACCAAAGCACGCGAATGGACAGG
CGAACTTTCGCAATTCTATGTCATTTACTTCGAACTGTATTTGGTCTTTCGTCCACCAAGATTGTCGACTTTGAGGAAATGGTAGCAATGTTCTTGCACGTCCTTGCCCA
TGACGTGAAAAACCACGTCATTCAAAGGAAATTTGTACGGTCCAGTGAGACAGTATCGCGACATTTTAACCTTGTACTATTGGCTGTCATCCGACTATACGAGGAGTTGA
TAAAGAGACTGTTCCGGTGACAAACAACTACAATGATCAACATTGGAAGTGTTTCGAGTATATCAACCTCAAACCGTGCTCCGAGACATGTCTGGACGAAGGAGGAGGAG
GGCACTCTTGTGGAGTGTTTAATGGAGTTGGTGTCAATGGGGAGATGGAAATCGGATAA

Protein sequence

Show/hide protein sequence

MDQQTLLGVLTAFTLAQRQIFLTLELLMNDNRRITHTSFDTRHRIRQLAYFRMIHESDLVSHQSTRMDRRTFAILCHLLRTVFGLSSTKIVDFEEMVAMFLHVLAHDVKN
HVIQRKFVRSSETVSRHFNLVLLAVIRLYEELIKRLFR

MELO3C032060 (gene) of Melon (DHL92) v4 genome