CuGenDBv2

Gene ID	MELO3C032116
Organism	Cucumis melo DHL92 (Melon (DHL92) v4)
Description	60S ribosomal protein L17
Genome location	chr06:20763621..20765491
RNA-Seq Expression	MELO3C032116
Synteny	MELO3C032116
Gene Ontology terms	GO:0002181 - cytoplasmic translation (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001063 - Ribosomal protein L22/L17 IPR005721 - Ribosomal protein L22/L17, eukaryotic/archaeal IPR036394 - Ribosomal protein L22/L17 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KJB38791.1 hypothetical protein B456_006G271800 [Gossypium raimondii]

8.5e-15

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Query:  RHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK
        RHSNGQGRWP+KSA FILDLLKNA +N +VKGLDVDSLI SHIQVNQAQK
Subjt:  RHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK

XP_009372302.1 PREDICTED: 60S ribosomal protein L17-1 [Pyrus x bretschneideri]

8.5e-15

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Query:  RHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK
        RHSNGQGRWP+KSA FILDLLKNA +N +VKGLDVDSLI SHIQVNQAQK
Subjt:  RHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK

XP_024399217.1 60S ribosomal protein L17-like [Physcomitrium patens]

5.0e-15

82.35

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Query:  ARHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK
        ARHSNGQGRWP+KSA F+LDLLKNA +N +VKGLDVDSL+ SHIQVNQAQK
Subjt:  ARHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK

XP_034198161.1 60S ribosomal protein L17-2-like [Prunus dulcis]

8.5e-15

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Query:  RHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK
        RHSNGQGRWP+KSA FILDLLKNA +N +VKGLDVDSLI SHIQVNQAQK
Subjt:  RHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK

XP_040957430.1 60S ribosomal protein L17-2 [Gossypium hirsutum]

8.5e-15

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Query:  RHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK
        RHSNGQGRWP+KSA FILDLLKNA +N +VKGLDVDSLI SHIQVNQAQK
Subjt:  RHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK

TrEMBL top hits

e value

%identity

Alignment

A0A314ZFI7 60S ribosomal protein L17-2

4.1e-15

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Query:  RHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK
        RHSNGQGRWP+KSA FILDLLKNA +N +VKGLDVDSLI SHIQVNQAQK
Subjt:  RHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK

A0A5A7STA3 60S ribosomal protein L17-2

4.1e-15

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Query:  RHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK
        RHSNGQGRWP+KSA FILDLLKNA +N +VKGLDVDSLI SHIQVNQAQK
Subjt:  RHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK

A0A6J5TK05 Uncharacterized protein

4.1e-15

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Query:  RHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK
        RHSNGQGRWP+KSA FILDLLKNA +N +VKGLDVDSLI SHIQVNQAQK
Subjt:  RHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK

A9RQX8 Predicted protein

2.4e-15

82.35

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Query:  ARHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK
        ARHSNGQGRWP+KSA F+LDLLKNA +N +VKGLDVDSL+ SHIQVNQAQK
Subjt:  ARHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK

M5XS28 Uncharacterized protein

4.1e-15

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Query:  RHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK
        RHSNGQGRWP+KSA FILDLLKNA +N +VKGLDVDSLI SHIQVNQAQK
Subjt:  RHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK

SwissProt top hits

e value

%identity

Alignment

O48557 60S ribosomal protein L17

9.5e-17

80.39

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Query:  ARHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK
        +RHSNGQGRWP+KSA FILDLLKNA +N  VKGLDVD+L  SHIQVNQAQK
Subjt:  ARHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK

P35266 60S ribosomal protein L17-1

1.5e-14

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Query:  RHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK
        R  NGQGRWP KSA F+LDLLKNA +N +VKGLDVD+L  SHIQVNQAQK
Subjt:  RHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK

P35267 60S ribosomal protein L17-2

1.5e-14

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Query:  RHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK
        R  NGQGRWP KSA F+LDLLKNA +N +VKGLDVD+L  SHIQVNQAQK
Subjt:  RHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK

P51413 60S ribosomal protein L17-2

1.8e-15

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Query:  RHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK
        RHSNGQGRWP KSA F+LDLLKNA +N +VKGLDVD+L  SHIQVNQA K
Subjt:  RHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK

Q93VI3 60S ribosomal protein L17-1

1.8e-15

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Query:  RHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK
        RHSNGQGRWP KSA F+LDLLKNA +N +VKGLDVD+L  SHIQVNQA K
Subjt:  RHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK

Arabidopsis top hits

e value

%identity

Alignment

AT1G27400.1 Ribosomal protein L22p/L17e family protein

1.3e-16

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Query:  RHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK
        RHSNGQGRWP KSA F+LDLLKNA +N +VKGLDVD+L  SHIQVNQA K
Subjt:  RHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK

AT1G67430.1 Ribosomal protein L22p/L17e family protein

1.3e-16

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Query:  RHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK
        RHSNGQGRWP KSA F+LDLLKNA +N +VKGLDVD+L  SHIQVNQA K
Subjt:  RHSNGQGRWPIKSANFILDLLKNAGNNVKVKGLDVDSLIASHIQVNQAQK

AT1G67430.2 Ribosomal protein L22p/L17e family protein

3.1e-07

73.33

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Query:  RHSNGQGRWPIKSANFILDLLKNAGNNVKV
        RHSNGQGRWP KSA F+LDLLKNA +N ++
Subjt:  RHSNGQGRWPIKSANFILDLLKNAGNNVKV

Sequences

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CDS sequence

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ATGACTCCGGCCAACCTCTGCCACTACGCGTCGTCTACCTCTGTCACCGTCTCAGGTCTCCGCCGCTCTCTCTGCCACCAGTCTCTCTGCCACCCACGACCTACCTTTCG
TTCAACCTCTGTCGCCGTTTATAGGTCTCTGACGTTTCAATGTCAGTCTAGACGAAGCATACGAGGCTCAATCGATCCCAACATGAAGTTTAGGCTTCGGTTAAAATTGG
CTTCACGTTGGACTCTCCAACTTTTTATATTGTCTGCGAGGCATTCAAATGGACAAGGACGATGGCCTATTAAATCTGCAAATTTTATTCTAGATCTTCTTAAGAATGCA
GGGAATAATGTGAAAGTGAAAGGACTGGATGTTGATTCTCTCATCGCATCCCACATTCAGGTGAACCAAGCTCAAAAGGTAAATATTGTGGTCCATTTGTATGTGCTAAA
TGCTTGTTTAAAAGCCTTCAAGATTAGTTTAGTGGGAGTGCTCAAGCTAATGAATGTCATGATAAAATTAATTCTACCAATATCTGGGGTTGGGGGCTACTGTTTTTCCA
ATTCACCTACTCTTAGCCACAGAGACACTATGTCATTCGCAGATTTAGATGCTGAATCATCTTGTTTGTTTAGGATTAGTTTGTTTCCATTTGGTTAG

mRNA sequence

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AAATTTCACCCGAGTTTCTTTCGCTCCTTTCATTCCCCTGAGAAGCCTCTCCTTCGACGCGATAACTCACACGGTCGCAACATTCTACCCAACCCGTCTTTTTCGTTAAA
GCTCTGCTGCCACGCACAACTCTTGCCAACCTTTGCTGCCATGCATGACTCCGGCCAACCTCTGCCACTACGCGTCGTCTACCTCTGTCACCGTCTCAGGTCTCCGCCGC
TCTCTCTGCCACCAGTCTCTCTGCCACCCACGACCTACCTTTCGTTCAACCTCTGTCGCCGTTTATAGGTCTCTGACGTTTCAATGTCAGTCTAGACGAAGCATACGAGG
CTCAATCGATCCCAACATGAAGTTTAGGCTTCGGTTAAAATTGGCTTCACGTTGGACTCTCCAACTTTTTATATTGTCTGCGAGGCATTCAAATGGACAAGGACGATGGC
CTATTAAATCTGCAAATTTTATTCTAGATCTTCTTAAGAATGCAGGGAATAATGTGAAAGTGAAAGGACTGGATGTTGATTCTCTCATCGCATCCCACATTCAGGTGAAC
CAAGCTCAAAAGGTAAATATTGTGGTCCATTTGTATGTGCTAAATGCTTGTTTAAAAGCCTTCAAGATTAGTTTAGTGGGAGTGCTCAAGCTAATGAATGTCATGATAAA
ATTAATTCTACCAATATCTGGGGTTGGGGGCTACTGTTTTTCCAATTCACCTACTCTTAGCCACAGAGACACTATGTCATTCGCAGATTTAGATGCTGAATCATCTTGTT
TGTTTAGGATTAGTTTGTTTCCATTTGGTTAG

Protein sequence

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MTPANLCHYASSTSVTVSGLRRSLCHQSLCHPRPTFRSTSVAVYRSLTFQCQSRRSIRGSIDPNMKFRLRLKLASRWTLQLFILSARHSNGQGRWPIKSANFILDLLKNA
GNNVKVKGLDVDSLIASHIQVNQAQKVNIVVHLYVLNACLKAFKISLVGVLKLMNVMIKLILPISGVGGYCFSNSPTLSHRDTMSFADLDAESSCLFRISLFPFG

MELO3C032116 (gene) of Melon (DHL92) v4 genome