CuGenDBv2

Gene ID	MELO3C032144
Organism	Cucumis melo DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Genome location	chr01:29245070..29246149
RNA-Seq Expression	MELO3C032144
Synteny	MELO3C032144
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0032766.1 retrotransposon protein [Cucumis melo var. makuwa]

6.8e-108

88.64

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Query:  MGGWKSDNGTFCPGYLMQLVRIMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYY
        MGGWKSDNGTF PGYL QLVR+MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCI+ EKELFDNWVRSH AAK LLNKPFPYY
Subjt:  MGGWKSDNGTFCPGYLMQLVRIMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYY

Query:  DELTYVFGRDRATSRLAETFADVGSNEP-DRYDRFDMGDGNEELPPVYSQGIDLSQNNVRASRPSRASEGRTRSSGSKRKRRSQRDLDVEAIHLALDQTN
        DELTYVFGRDRAT R AETFADVGSNEP   YDRFDMGDGNE+ PPVYSQG+D+SQ++VRASRPSRASEGRT SSGSKRKR SQRD ++EAIHLALDQTN
Subjt:  DELTYVFGRDRATSRLAETFADVGSNEP-DRYDRFDMGDGNEELPPVYSQGIDLSQNNVRASRPSRASEGRTRSSGSKRKRRSQRDLDVEAIHLALDQTN

Query:  EQLKQIAEWPARTLANDNHV
        EQL+QIAEWPAR LANDNHV
Subjt:  EQLKQIAEWPARTLANDNHV

KAA0033744.1 retrotransposon protein [Cucumis melo var. makuwa]

1.5e-107

88.18

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Query:  MGGWKSDNGTFCPGYLMQLVRIMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYY
        MGGWKSDNGTF PGYL QLVR+MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCI+ EKELFDNWVRSH AAK LLNKPFPYY
Subjt:  MGGWKSDNGTFCPGYLMQLVRIMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYY

Query:  DELTYVFGRDRATSRLAETFADVGSNEP-DRYDRFDMGDGNEELPPVYSQGIDLSQNNVRASRPSRASEGRTRSSGSKRKRRSQRDLDVEAIHLALDQTN
        DELTYVFGRDRAT R AETFADVGSNEP   YDRFDMGDGNE+ PPVYSQG+D+SQ++VRASRPSRASEGRT SSGSKRKR SQRD ++EAIHLALDQTN
Subjt:  DELTYVFGRDRATSRLAETFADVGSNEP-DRYDRFDMGDGNEELPPVYSQGIDLSQNNVRASRPSRASEGRTRSSGSKRKRRSQRDLDVEAIHLALDQTN

Query:  EQLKQIAEWPARTLANDNHV
        EQL++IAEWPAR LANDNHV
Subjt:  EQLKQIAEWPARTLANDNHV

KAA0044610.1 retrotransposon protein [Cucumis melo var. makuwa]

1.5e-107

88.18

Show/hide

Query:  MGGWKSDNGTFCPGYLMQLVRIMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYY
        MGGWKSDNGTF PGYL QLVR+MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCI+ EKELFDNWVRSH AAK LLNKPFPYY
Subjt:  MGGWKSDNGTFCPGYLMQLVRIMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYY

Query:  DELTYVFGRDRATSRLAETFADVGSNEP-DRYDRFDMGDGNEELPPVYSQGIDLSQNNVRASRPSRASEGRTRSSGSKRKRRSQRDLDVEAIHLALDQTN
        DELTYVFGRDRAT R AETFADVGSNEP   YDRFDMGDGNE+ PPVYSQG+D+SQ++VRASRPSRAS+GRT SSGSKRKR SQRD ++EAIHLALDQTN
Subjt:  DELTYVFGRDRATSRLAETFADVGSNEP-DRYDRFDMGDGNEELPPVYSQGIDLSQNNVRASRPSRASEGRTRSSGSKRKRRSQRDLDVEAIHLALDQTN

Query:  EQLKQIAEWPARTLANDNHV
        EQL+QIAEWPAR LANDNHV
Subjt:  EQLKQIAEWPARTLANDNHV

KAA0066208.1 retrotransposon protein [Cucumis melo var. makuwa]

8.0e-109

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Query:  MGGWKSDNGTFCPGYLMQLVRIMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYY
        MGGWKSDNGTF PGYL QLVR+MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCII EKELFDNWVRSH AAK LLNKPFPYY
Subjt:  MGGWKSDNGTFCPGYLMQLVRIMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYY

Query:  DELTYVFGRDRATSRLAETFADVGSNEP-DRYDRFDMGDGNEELPPVYSQGIDLSQNNVRASRPSRASEGRTRSSGSKRKRRSQRDLDVEAIHLALDQTN
        DELTYVFGRDRAT R AETFADVGSNEP   YDRFDMGDGNE+ PPVYSQG+D+SQ++VRASRPSRASEGRT SSGSKRKR SQRD DVEAIHLALDQTN
Subjt:  DELTYVFGRDRATSRLAETFADVGSNEP-DRYDRFDMGDGNEELPPVYSQGIDLSQNNVRASRPSRASEGRTRSSGSKRKRRSQRDLDVEAIHLALDQTN

Query:  EQLKQIAEWPARTLANDNHV
        EQL+QIAEWPAR LANDNHV
Subjt:  EQLKQIAEWPARTLANDNHV

TYK21395.1 retrotransposon protein [Cucumis melo var. makuwa]

6.8e-108

88.64

Show/hide

Query:  MGGWKSDNGTFCPGYLMQLVRIMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYY
        MGGWKSDNGTF PGYL QLVR+MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCI+ EKELFDNWVRSH AAK LLNKPFPYY
Subjt:  MGGWKSDNGTFCPGYLMQLVRIMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYY

Query:  DELTYVFGRDRATSRLAETFADVGSNEP-DRYDRFDMGDGNEELPPVYSQGIDLSQNNVRASRPSRASEGRTRSSGSKRKRRSQRDLDVEAIHLALDQTN
        DELTYVFGRDRAT R AETFADVGSNEP   YDRFDMGDGNE+ PPVYSQG+D+SQ++VRASRPSRASEGRT SSGSKRKR SQRD ++EAIHLALDQTN
Subjt:  DELTYVFGRDRATSRLAETFADVGSNEP-DRYDRFDMGDGNEELPPVYSQGIDLSQNNVRASRPSRASEGRTRSSGSKRKRRSQRDLDVEAIHLALDQTN

Query:  EQLKQIAEWPARTLANDNHV
        EQL+QIAEWPAR LANDNHV
Subjt:  EQLKQIAEWPARTLANDNHV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SRU1 Retrotransposon protein

3.3e-108

88.64

Show/hide

Query:  MGGWKSDNGTFCPGYLMQLVRIMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYY
        MGGWKSDNGTF PGYL QLVR+MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCI+ EKELFDNWVRSH AAK LLNKPFPYY
Subjt:  MGGWKSDNGTFCPGYLMQLVRIMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYY

Query:  DELTYVFGRDRATSRLAETFADVGSNEP-DRYDRFDMGDGNEELPPVYSQGIDLSQNNVRASRPSRASEGRTRSSGSKRKRRSQRDLDVEAIHLALDQTN
        DELTYVFGRDRAT R AETFADVGSNEP   YDRFDMGDGNE+ PPVYSQG+D+SQ++VRASRPSRASEGRT SSGSKRKR SQRD ++EAIHLALDQTN
Subjt:  DELTYVFGRDRATSRLAETFADVGSNEP-DRYDRFDMGDGNEELPPVYSQGIDLSQNNVRASRPSRASEGRTRSSGSKRKRRSQRDLDVEAIHLALDQTN

Query:  EQLKQIAEWPARTLANDNHV
        EQL+QIAEWPAR LANDNHV
Subjt:  EQLKQIAEWPARTLANDNHV

A0A5A7TN44 Retrotransposon protein

7.3e-108

88.18

Show/hide

Query:  MGGWKSDNGTFCPGYLMQLVRIMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYY
        MGGWKSDNGTF PGYL QLVR+MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCI+ EKELFDNWVRSH AAK LLNKPFPYY
Subjt:  MGGWKSDNGTFCPGYLMQLVRIMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYY

Query:  DELTYVFGRDRATSRLAETFADVGSNEP-DRYDRFDMGDGNEELPPVYSQGIDLSQNNVRASRPSRASEGRTRSSGSKRKRRSQRDLDVEAIHLALDQTN
        DELTYVFGRDRAT R AETFADVGSNEP   YDRFDMGDGNE+ PPVYSQG+D+SQ++VRASRPSRAS+GRT SSGSKRKR SQRD ++EAIHLALDQTN
Subjt:  DELTYVFGRDRATSRLAETFADVGSNEP-DRYDRFDMGDGNEELPPVYSQGIDLSQNNVRASRPSRASEGRTRSSGSKRKRRSQRDLDVEAIHLALDQTN

Query:  EQLKQIAEWPARTLANDNHV
        EQL+QIAEWPAR LANDNHV
Subjt:  EQLKQIAEWPARTLANDNHV

A0A5A7TRV1 Retrotransposon protein

7.3e-108

88.18

Show/hide

Query:  MGGWKSDNGTFCPGYLMQLVRIMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYY
        MGGWKSDNGTF PGYL QLVR+MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCI+ EKELFDNWVRSH AAK LLNKPFPYY
Subjt:  MGGWKSDNGTFCPGYLMQLVRIMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYY

Query:  DELTYVFGRDRATSRLAETFADVGSNEP-DRYDRFDMGDGNEELPPVYSQGIDLSQNNVRASRPSRASEGRTRSSGSKRKRRSQRDLDVEAIHLALDQTN
        DELTYVFGRDRAT R AETFADVGSNEP   YDRFDMGDGNE+ PPVYSQG+D+SQ++VRASRPSRASEGRT SSGSKRKR SQRD ++EAIHLALDQTN
Subjt:  DELTYVFGRDRATSRLAETFADVGSNEP-DRYDRFDMGDGNEELPPVYSQGIDLSQNNVRASRPSRASEGRTRSSGSKRKRRSQRDLDVEAIHLALDQTN

Query:  EQLKQIAEWPARTLANDNHV
        EQL++IAEWPAR LANDNHV
Subjt:  EQLKQIAEWPARTLANDNHV

A0A5A7VES2 Retrotransposon protein

3.9e-109

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Query:  MGGWKSDNGTFCPGYLMQLVRIMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYY
        MGGWKSDNGTF PGYL QLVR+MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCII EKELFDNWVRSH AAK LLNKPFPYY
Subjt:  MGGWKSDNGTFCPGYLMQLVRIMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYY

Query:  DELTYVFGRDRATSRLAETFADVGSNEP-DRYDRFDMGDGNEELPPVYSQGIDLSQNNVRASRPSRASEGRTRSSGSKRKRRSQRDLDVEAIHLALDQTN
        DELTYVFGRDRAT R AETFADVGSNEP   YDRFDMGDGNE+ PPVYSQG+D+SQ++VRASRPSRASEGRT SSGSKRKR SQRD DVEAIHLALDQTN
Subjt:  DELTYVFGRDRATSRLAETFADVGSNEP-DRYDRFDMGDGNEELPPVYSQGIDLSQNNVRASRPSRASEGRTRSSGSKRKRRSQRDLDVEAIHLALDQTN

Query:  EQLKQIAEWPARTLANDNHV
        EQL+QIAEWPAR LANDNHV
Subjt:  EQLKQIAEWPARTLANDNHV

A0A5D3DCZ1 Retrotransposon protein

3.3e-108

88.64

Show/hide

Query:  MGGWKSDNGTFCPGYLMQLVRIMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYY
        MGGWKSDNGTF PGYL QLVR+MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCI+ EKELFDNWVRSH AAK LLNKPFPYY
Subjt:  MGGWKSDNGTFCPGYLMQLVRIMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYY

Query:  DELTYVFGRDRATSRLAETFADVGSNEP-DRYDRFDMGDGNEELPPVYSQGIDLSQNNVRASRPSRASEGRTRSSGSKRKRRSQRDLDVEAIHLALDQTN
        DELTYVFGRDRAT R AETFADVGSNEP   YDRFDMGDGNE+ PPVYSQG+D+SQ++VRASRPSRASEGRT SSGSKRKR SQRD ++EAIHLALDQTN
Subjt:  DELTYVFGRDRATSRLAETFADVGSNEP-DRYDRFDMGDGNEELPPVYSQGIDLSQNNVRASRPSRASEGRTRSSGSKRKRRSQRDLDVEAIHLALDQTN

Query:  EQLKQIAEWPARTLANDNHV
        EQL+QIAEWPAR LANDNHV
Subjt:  EQLKQIAEWPARTLANDNHV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G02210.1 unknown protein

1.2e-06

26.05

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Query:  VIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYYDELTYVFGRDRATSRLAETFADVGSNEPDRYDRFDM
        V+  R K+L+R F AI  +      GF W++E + +  +  ++ +++++H  A++ + +P PYY +L  + G             D G  E + +   D 
Subjt:  VIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYYDELTYVFGRDRATSRLAETFADVGSNEPDRYDRFDM

Query:  GDGNEELPPVYSQG-IDLS
         D   E     S G  DLS
Subjt:  GDGNEELPPVYSQG-IDLS

AT4G02210.2 unknown protein

1.2e-06

26.05

Show/hide

Query:  VIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYYDELTYVFGRDRATSRLAETFADVGSNEPDRYDRFDM
        V+  R K+L+R F AI  +      GF W++E + +  +  ++ +++++H  A++ + +P PYY +L  + G             D G  E + +   D 
Subjt:  VIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYYDELTYVFGRDRATSRLAETFADVGSNEPDRYDRFDM

Query:  GDGNEELPPVYSQG-IDLS
         D   E     S G  DLS
Subjt:  GDGNEELPPVYSQG-IDLS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGGGGATGGAAATCAGATAATGGTACGTTCTGTCCAGGTTACCTTATGCAGTTGGTACGCATAATGGCGGAGAAACTACCTGGATGTCAGGTCCGAGCAACGACTGT
AATTGATTGTAGAATTAAGACACTGAAGCGAACATTCCAGGCCATCGCCGAAATGCGGGGGCCAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCATTA
CGGAGAAAGAATTATTTGATAATTGGGTTAGGTCGCATCATGCAGCGAAGAGACTCCTGAACAAACCATTCCCGTATTATGACGAACTTACATATGTCTTCGGTCGCGAT
AGGGCGACGAGTCGGTTAGCTGAGACATTCGCCGACGTGGGGTCTAACGAGCCTGACAGATATGACAGATTTGATATGGGGGATGGAAACGAGGAGTTACCACCCGTGTA
CAGCCAGGGGATTGACCTCTCGCAGAACAATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGACCAGATCGAGTGGATCCAAGAGAAAGAGGAGAAGTCAGC
GAGACTTGGATGTTGAAGCCATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAAGCAGATTGCGGAGTGGCCTGCACGCACCCTTGCAAATGACAACCATGTGCAT
ATTGCGTGA

mRNA sequence

Show/hide mRNA sequence

ACTGTTAAATTGTGAAATTACTAACGTACTCCATGTATTTTTTGTAATTTGTCATTCTCAGTATGTCAACCTCAAATCGTGCCCCAAGACATGTCTGGACGAAGGAGAAG
GAGGGCACTCTTGTGGAATGTTTAGTGGAGTTGGTGTAAATGGGGGGATGGAAATCAGATAATGGTACGTTCTGTCCAGGTTACCTTATGCAGTTGGTACGCATAATGGC
GGAGAAACTACCTGGATGTCAGGTCCGAGCAACGACTGTAATTGATTGTAGAATTAAGACACTGAAGCGAACATTCCAGGCCATCGCCGAAATGCGGGGGCCAGCGTGCA
GTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCATTACGGAGAAAGAATTATTTGATAATTGGGTTAGGTCGCATCATGCAGCGAAGAGACTCCTGAACAAACCATTC
CCGTATTATGACGAACTTACATATGTCTTCGGTCGCGATAGGGCGACGAGTCGGTTAGCTGAGACATTCGCCGACGTGGGGTCTAACGAGCCTGACAGATATGACAGATT
TGATATGGGGGATGGAAACGAGGAGTTACCACCCGTGTACAGCCAGGGGATTGACCTCTCGCAGAACAATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGTAGGA
CCAGATCGAGTGGATCCAAGAGAAAGAGGAGAAGTCAGCGAGACTTGGATGTTGAAGCCATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAAGCAGATTGCGGAG
TGGCCTGCACGCACCCTTGCAAATGACAACCATGTGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGCGCTATTGCAAAGGCATCTTTTGTCTCGTATGG
ACGACCTTCGAGGTTACGTACTCATGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGAGACATCACGAGATA

Protein sequence

Show/hide protein sequence

MGGWKSDNGTFCPGYLMQLVRIMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIITEKELFDNWVRSHHAAKRLLNKPFPYYDELTYVFGRD
RATSRLAETFADVGSNEPDRYDRFDMGDGNEELPPVYSQGIDLSQNNVRASRPSRASEGRTRSSGSKRKRRSQRDLDVEAIHLALDQTNEQLKQIAEWPARTLANDNHVH
IA

MELO3C032144 (gene) of Melon (DHL92) v4 genome