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MELO3C032156 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C032156
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr06:22953890..22954615
RNA-Seq ExpressionMELO3C032156
SyntenyMELO3C032156
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026115.1 retrotransposon protein [Cucumis melo var. makuwa]2.4e-4450.23Show/hide
Query:  MDLHEIATIVSAFTITQQHMLLILETLLPDNKRITHILADARHRIRHLTFFRMIHASDLVCQKSMWMDRRCFTILCHILQTRTDLESTERV-VEEMVALF
        MD HE+A+IV+AF  +Q  +LL+LE L  D KRITHI  + RHRIR L +FRMIH SDLVC++S  MDRRCF ILCH+L+T   L STE V VEEMVA+F
Subjt:  MDLHEIATIVSAFTITQQHMLLILETLLPDNKRITHILADARHRIRHLTFFRMIHASDLVCQKSMWMDRRCFTILCHILQTRTDLESTERV-VEEMVALF

Query:  LHVLAHDLCKIRNCVPY---------------------------------------------LLENCLGVLDDTYIKVNMSTADRPRYHTRKDEVATNVL
        LH+LAHD   ++NCV                                                 ENCLG LD TYIKVN+  +DR RY TRK EV TNVL
Subjt:  LHVLAHDLCKIRNCVPY---------------------------------------------LLENCLGVLDDTYIKVNMSTADRPRYHTRKDEVATNVL

Query:  DVCNTKGDFVFILVG
         VC+TKGDFV++L G
Subjt:  DVCNTKGDFVFILVG

KAA0035620.1 retrotransposon protein [Cucumis melo var. makuwa]2.4e-4451.89Show/hide
Query:  MDLHEIATIVSAFTITQQHMLLILETLLPDNKRITHILADARHRIRHLTFFRMIHASDLVCQKSMWMDRRCFTILCHILQTRTDLESTERV-VEEMVALF
        MD HE+A+IV+AF  +Q+ +LL+LE L  D KRITHI  + RHRIR L +FRMIH SDLVC++S  MDRRCF ILCH+L+T   L STE V VEEMVA+F
Subjt:  MDLHEIATIVSAFTITQQHMLLILETLLPDNKRITHILADARHRIRHLTFFRMIHASDLVCQKSMWMDRRCFTILCHILQTRTDLESTERV-VEEMVALF

Query:  LHVLAHD----------------------------------LCKIRNCVP--------YLLENCLGVLDDTYIKVNMSTADRPRYHTRKDEVATNVLDVC
        LH+LAHD                                  L K    VP           ENCLG LD TYIKVN+  +DR RY TRK EVATNVL VC
Subjt:  LHVLAHD----------------------------------LCKIRNCVP--------YLLENCLGVLDDTYIKVNMSTADRPRYHTRKDEVATNVLDVC

Query:  NTKGDFVFILVG
        +TKGDFV++L G
Subjt:  NTKGDFVFILVG

KAA0048361.1 retrotransposon protein [Cucumis melo var. makuwa]2.4e-4451.89Show/hide
Query:  MDLHEIATIVSAFTITQQHMLLILETLLPDNKRITHILADARHRIRHLTFFRMIHASDLVCQKSMWMDRRCFTILCHILQTRTDLESTERV-VEEMVALF
        MD HE+A+IV+AF  +Q+ +LL+LE L  D KRITHI  + RHRIR L +FRMIH SDLVC++S  MDRRCF ILCH+L+T   L STE V VEEMVA+F
Subjt:  MDLHEIATIVSAFTITQQHMLLILETLLPDNKRITHILADARHRIRHLTFFRMIHASDLVCQKSMWMDRRCFTILCHILQTRTDLESTERV-VEEMVALF

Query:  LHVLAHD----------------------------------LCKIRNCVP--------YLLENCLGVLDDTYIKVNMSTADRPRYHTRKDEVATNVLDVC
        LH+LAHD                                  L K    VP           ENCLG LD TYIKVN+  +DR RY TRK EVATNVL VC
Subjt:  LHVLAHD----------------------------------LCKIRNCVP--------YLLENCLGVLDDTYIKVNMSTADRPRYHTRKDEVATNVLDVC

Query:  NTKGDFVFILVG
        +TKGDFV++L G
Subjt:  NTKGDFVFILVG

KAA0065286.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-4451.89Show/hide
Query:  MDLHEIATIVSAFTITQQHMLLILETLLPDNKRITHILADARHRIRHLTFFRMIHASDLVCQKSMWMDRRCFTILCHILQTRTDLESTERV-VEEMVALF
        MD HE+A+IV+AF  +Q+ +LL+LE L  D KRITHI  + RHRIR L +FRMIH SDLVC++S  MDRRCF ILCH+L+T   L STE V VEEMVA+F
Subjt:  MDLHEIATIVSAFTITQQHMLLILETLLPDNKRITHILADARHRIRHLTFFRMIHASDLVCQKSMWMDRRCFTILCHILQTRTDLESTERV-VEEMVALF

Query:  LHVLAHD----------------------------------LCKIRNCVP--------YLLENCLGVLDDTYIKVNMSTADRPRYHTRKDEVATNVLDVC
        LH+LAHD                                  L K    VP           ENCLG LD TYIKVN+  +DR RY TRK EVATNVL VC
Subjt:  LHVLAHD----------------------------------LCKIRNCVP--------YLLENCLGVLDDTYIKVNMSTADRPRYHTRKDEVATNVLDVC

Query:  NTKGDFVFILVG
        +TKGDFV++L G
Subjt:  NTKGDFVFILVG

KAA0066270.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-5167.06Show/hide
Query:  MDLHEIATIVSAFTITQQHMLLILETLLPDNKRITHILADARHRIRHLTFFRMIHASDLVCQKSMWMDRRCFTILCHILQTRTDLESTERV-VEEMVALF
        MD  EIA +VSAFTITQ+ MLLILE LL DNKRITHI  D RH IRHLT+FRMIHA DLVC++S   DR CF I+CH+L+TR  LEST+ V VEEMV LF
Subjt:  MDLHEIATIVSAFTITQQHMLLILETLLPDNKRITHILADARHRIRHLTFFRMIHASDLVCQKSMWMDRRCFTILCHILQTRTDLESTERV-VEEMVALF

Query:  LHVLAHDLCKIRNCVPYLLENCLGVLDDTYIKVNMSTADRPRYHTRKDEVATNVLDVCNTKGDFVFILVG
        L+VL H+   ++N      +NCL  L+DTYIKVNMS AD PRY+TRK EVATNVL VC+TK DFVFIL G
Subjt:  LHVLAHDLCKIRNCVPYLLENCLGVLDDTYIKVNMSTADRPRYHTRKDEVATNVLDVCNTKGDFVFILVG

TrEMBL top hitse value%identityAlignment
A0A5A7TXW1 Retrotransposon protein1.1e-4451.89Show/hide
Query:  MDLHEIATIVSAFTITQQHMLLILETLLPDNKRITHILADARHRIRHLTFFRMIHASDLVCQKSMWMDRRCFTILCHILQTRTDLESTERV-VEEMVALF
        MD HE+A+IV+AF  +Q+ +LL+LE L  D KRITHI  + RHRIR L +FRMIH SDLVC++S  MDRRCF ILCH+L+T   L STE V VEEMVA+F
Subjt:  MDLHEIATIVSAFTITQQHMLLILETLLPDNKRITHILADARHRIRHLTFFRMIHASDLVCQKSMWMDRRCFTILCHILQTRTDLESTERV-VEEMVALF

Query:  LHVLAHD----------------------------------LCKIRNCVP--------YLLENCLGVLDDTYIKVNMSTADRPRYHTRKDEVATNVLDVC
        LH+LAHD                                  L K    VP           ENCLG LD TYIKVN+  +DR RY TRK EVATNVL VC
Subjt:  LHVLAHD----------------------------------LCKIRNCVP--------YLLENCLGVLDDTYIKVNMSTADRPRYHTRKDEVATNVLDVC

Query:  NTKGDFVFILVG
        +TKGDFV++L G
Subjt:  NTKGDFVFILVG

A0A5A7U476 Retrotransposon protein1.1e-4451.89Show/hide
Query:  MDLHEIATIVSAFTITQQHMLLILETLLPDNKRITHILADARHRIRHLTFFRMIHASDLVCQKSMWMDRRCFTILCHILQTRTDLESTERV-VEEMVALF
        MD HE+A+IV+AF  +Q+ +LL+LE L  D KRITHI  + RHRIR L +FRMIH SDLVC++S  MDRRCF ILCH+L+T   L STE V VEEMVA+F
Subjt:  MDLHEIATIVSAFTITQQHMLLILETLLPDNKRITHILADARHRIRHLTFFRMIHASDLVCQKSMWMDRRCFTILCHILQTRTDLESTERV-VEEMVALF

Query:  LHVLAHD----------------------------------LCKIRNCVP--------YLLENCLGVLDDTYIKVNMSTADRPRYHTRKDEVATNVLDVC
        LH+LAHD                                  L K    VP           ENCLG LD TYIKVN+  +DR RY TRK EVATNVL VC
Subjt:  LHVLAHD----------------------------------LCKIRNCVP--------YLLENCLGVLDDTYIKVNMSTADRPRYHTRKDEVATNVLDVC

Query:  NTKGDFVFILVG
        +TKGDFV++L G
Subjt:  NTKGDFVFILVG

A0A5A7VG29 Retrotransposon protein8.8e-4551.89Show/hide
Query:  MDLHEIATIVSAFTITQQHMLLILETLLPDNKRITHILADARHRIRHLTFFRMIHASDLVCQKSMWMDRRCFTILCHILQTRTDLESTERV-VEEMVALF
        MD HE+A+IV+AF  +Q+ +LL+LE L  D KRITHI  + RHRIR L +FRMIH SDLVC++S  MDRRCF ILCH+L+T   L STE V VEEMVA+F
Subjt:  MDLHEIATIVSAFTITQQHMLLILETLLPDNKRITHILADARHRIRHLTFFRMIHASDLVCQKSMWMDRRCFTILCHILQTRTDLESTERV-VEEMVALF

Query:  LHVLAHD----------------------------------LCKIRNCVP--------YLLENCLGVLDDTYIKVNMSTADRPRYHTRKDEVATNVLDVC
        LH+LAHD                                  L K    VP           ENCLG LD TYIKVN+  +DR RY TRK EVATNVL VC
Subjt:  LHVLAHD----------------------------------LCKIRNCVP--------YLLENCLGVLDDTYIKVNMSTADRPRYHTRKDEVATNVLDVC

Query:  NTKGDFVFILVG
        +TKGDFV++L G
Subjt:  NTKGDFVFILVG

A0A5D3BDX0 Retrotransposon protein1.1e-4451.89Show/hide
Query:  MDLHEIATIVSAFTITQQHMLLILETLLPDNKRITHILADARHRIRHLTFFRMIHASDLVCQKSMWMDRRCFTILCHILQTRTDLESTERV-VEEMVALF
        MD HE+A+IV+AF  +Q+ +LL+LE L  D KRITHI  + RHRIR L +FRMIH SDLVC++S  MDRRCF ILCH+L+T   L STE V VEEMVA+F
Subjt:  MDLHEIATIVSAFTITQQHMLLILETLLPDNKRITHILADARHRIRHLTFFRMIHASDLVCQKSMWMDRRCFTILCHILQTRTDLESTERV-VEEMVALF

Query:  LHVLAHD----------------------------------LCKIRNCVP--------YLLENCLGVLDDTYIKVNMSTADRPRYHTRKDEVATNVLDVC
        LH+LAHD                                  L K    VP           ENCLG LD TYIKVN+  +DR RY TRK EVATNVL VC
Subjt:  LHVLAHD----------------------------------LCKIRNCVP--------YLLENCLGVLDDTYIKVNMSTADRPRYHTRKDEVATNVLDVC

Query:  NTKGDFVFILVG
        +TKGDFV++L G
Subjt:  NTKGDFVFILVG

A0A5D3BGQ4 Retrotransposon protein9.7e-5267.06Show/hide
Query:  MDLHEIATIVSAFTITQQHMLLILETLLPDNKRITHILADARHRIRHLTFFRMIHASDLVCQKSMWMDRRCFTILCHILQTRTDLESTERV-VEEMVALF
        MD  EIA +VSAFTITQ+ MLLILE LL DNKRITHI  D RH IRHLT+FRMIHA DLVC++S   DR CF I+CH+L+TR  LEST+ V VEEMV LF
Subjt:  MDLHEIATIVSAFTITQQHMLLILETLLPDNKRITHILADARHRIRHLTFFRMIHASDLVCQKSMWMDRRCFTILCHILQTRTDLESTERV-VEEMVALF

Query:  LHVLAHDLCKIRNCVPYLLENCLGVLDDTYIKVNMSTADRPRYHTRKDEVATNVLDVCNTKGDFVFILVG
        L+VL H+   ++N      +NCL  L+DTYIKVNMS AD PRY+TRK EVATNVL VC+TK DFVFIL G
Subjt:  LHVLAHDLCKIRNCVPYLLENCLGVLDDTYIKVNMSTADRPRYHTRKDEVATNVLDVCNTKGDFVFILVG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43722.1 unknown protein2.5e-0436.84Show/hide
Query:  FRMIHASDLVCQKSMWMDRRCFTILCHILQTRTDLESTERV-VEEMVALFLHVLAHD
        +R +      C + + M   CFT LC++LQT  DL+ T  + +EE VA+FL +  H+
Subjt:  FRMIHASDLVCQKSMWMDRRCFTILCHILQTRTDLESTERV-VEEMVALFLHVLAHD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCTACACGAAATCGCTACTATTGTATCTGCATTCACAATAACCCAACAACATATGCTCCTAATATTGGAGACACTATTGCCTGATAATAAGCGTATAACTCACAT
CTTGGCCGATGCAAGACATAGGATTAGGCACCTAACGTTCTTTCGCATGATACACGCGTCTGACCTAGTGTGTCAGAAAAGTATGTGGATGGACAGACGCTGCTTCACAA
TTCTATGCCATATACTACAAACTAGGACCGATTTAGAATCTACTGAACGCGTGGTTGAGGAGATGGTCGCCCTTTTCCTTCATGTGCTAGCGCACGATTTGTGCAAAATA
AGAAATTGTGTTCCATATTTGTTGGAAAATTGCCTTGGGGTACTTGACGACACGTACATCAAAGTTAACATGTCAACAGCAGATAGACCAAGGTATCACACACGAAAGGA
TGAAGTGGCGACAAATGTCCTCGATGTATGCAATACGAAGGGGGACTTCGTTTTCATTTTAGTCGGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACCTACACGAAATCGCTACTATTGTATCTGCATTCACAATAACCCAACAACATATGCTCCTAATATTGGAGACACTATTGCCTGATAATAAGCGTATAACTCACAT
CTTGGCCGATGCAAGACATAGGATTAGGCACCTAACGTTCTTTCGCATGATACACGCGTCTGACCTAGTGTGTCAGAAAAGTATGTGGATGGACAGACGCTGCTTCACAA
TTCTATGCCATATACTACAAACTAGGACCGATTTAGAATCTACTGAACGCGTGGTTGAGGAGATGGTCGCCCTTTTCCTTCATGTGCTAGCGCACGATTTGTGCAAAATA
AGAAATTGTGTTCCATATTTGTTGGAAAATTGCCTTGGGGTACTTGACGACACGTACATCAAAGTTAACATGTCAACAGCAGATAGACCAAGGTATCACACACGAAAGGA
TGAAGTGGCGACAAATGTCCTCGATGTATGCAATACGAAGGGGGACTTCGTTTTCATTTTAGTCGGCTAG
Protein sequenceShow/hide protein sequence
MDLHEIATIVSAFTITQQHMLLILETLLPDNKRITHILADARHRIRHLTFFRMIHASDLVCQKSMWMDRRCFTILCHILQTRTDLESTERVVEEMVALFLHVLAHDLCKI
RNCVPYLLENCLGVLDDTYIKVNMSTADRPRYHTRKDEVATNVLDVCNTKGDFVFILVG