; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C032168 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C032168
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionReverse transcriptase
Genome locationchr11:15951666..15955019
RNA-Seq ExpressionMELO3C032168
SyntenyMELO3C032168
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035073.1 uncharacterized protein E6C27_scaffold57G001380 [Cucumis melo var. makuwa]1.4e-6591.89Show/hide
Query:  QSRQIQVQKSVVRRLHAIFRSKVAGSLGGGVVPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRPDRAEPSDPEKAYRIERL
        +SRQIQVQKSVVRRLHAIFRSKVA     GV+PPRTGR+RRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGR DRAEPSDPEKAY IERL
Subjt:  QSRQIQVQKSVVRRLHAIFRSKVAGSLGGGVVPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRPDRAEPSDPEKAYRIERL

Query:  KKLGATVFEGSTDPADAENWLNMLEKCFDVMNFPEERKVRLATFLLQK
        KKLGATVFEGSTD ADAENWLNMLEKCFDVMN PEERKVRLATFLLQK
Subjt:  KKLGATVFEGSTDPADAENWLNMLEKCFDVMNFPEERKVRLATFLLQK

KAA0037607.1 uncharacterized protein E6C27_scaffold277G002620 [Cucumis melo var. makuwa]1.3e-8779.5Show/hide
Query:  MTEILSLRLEITVCTL----------------------VSLGLLVKS-------------MCLTSLGSAVFCGMYNSLYTRLASSSHESFKQSRQIQVQK
        MTEILSLRLEITV TL                      VSLGLLVKS             +CLTSLGSAVFCGMYNSLYTRLASSSHESFKQSRQIQVQK
Subjt:  MTEILSLRLEITVCTL----------------------VSLGLLVKS-------------MCLTSLGSAVFCGMYNSLYTRLASSSHESFKQSRQIQVQK

Query:  SVVRRLHAIFRSKVAGSLGGGVVPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRPDRAEPSDPEKAYRIERLKKLGATVFE
        SVVRRLHAIFRSKVA     GV+PPRTGRRRRQNQDGMQGPTQ PSVGESSTLGVRGGAGNEQFA TTQ+IGRPDRAEPSDPEKAY IERLKKLGATVFE
Subjt:  SVVRRLHAIFRSKVAGSLGGGVVPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRPDRAEPSDPEKAYRIERLKKLGATVFE

Query:  GSTDPADAENWLNMLEKCFDVMNFPEERKVRLATFLLQK
        GSTDPAD ENWLNMLEKCFDVMN PEERKVRLATFLLQK
Subjt:  GSTDPADAENWLNMLEKCFDVMNFPEERKVRLATFLLQK

KAA0042134.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.9e-6377.59Show/hide
Query:  QSRQIQVQKSVVRRLHAIFRSKVAGSLGGG--------------------------VVPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFA
        +S  ++VQKSVVR+LHAIFRSKVAGS GGG                          V+PPRTGRRRRQ QDGMQGPTQGPSVGESSTLGVRGGAGNEQF 
Subjt:  QSRQIQVQKSVVRRLHAIFRSKVAGSLGGG--------------------------VVPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFA

Query:  RTTQEIGRPDRAEPSDPEKAYRIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNFPEERKVRLATFLLQK
        RTT EIGRPDRAEPSDPEKAY IERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMN PEERKVRLATFLLQK
Subjt:  RTTQEIGRPDRAEPSDPEKAYRIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNFPEERKVRLATFLLQK

KAA0054814.1 reverse transcriptase [Cucumis melo var. makuwa]6.8e-5797.44Show/hide
Query:  VPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRPDRAEPSDPEKAYRIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVM
        +PPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRPDR EPSDPEKAYRIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVM
Subjt:  VPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRPDRAEPSDPEKAYRIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVM

Query:  NFPEERKVRLATFLLQK
        N PEERKVRLATFLLQK
Subjt:  NFPEERKVRLATFLLQK

KAA0056684.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.8e-8192.66Show/hide
Query:  LTSLGSAVFCGMYNSLYTRLASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAGSLGGGVVPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNE
        L  LGS VFCGMYNSLYTRLASSSHESFKQSRQIQVQK+VVRRLHAIFRSKVA     GV+PPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNE
Subjt:  LTSLGSAVFCGMYNSLYTRLASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAGSLGGGVVPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNE

Query:  QFARTTQEIGRPDRAEPSDPEKAYRIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNFPEERKVRLATFLLQK
        QFARTTQEIGR DRAEPSDPEKAY IERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMN PEERKVRLATFLLQK
Subjt:  QFARTTQEIGRPDRAEPSDPEKAYRIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNFPEERKVRLATFLLQK

TrEMBL top hitse value%identityAlignment
A0A5A7SX02 CCHC-type domain-containing protein6.6e-6691.89Show/hide
Query:  QSRQIQVQKSVVRRLHAIFRSKVAGSLGGGVVPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRPDRAEPSDPEKAYRIERL
        +SRQIQVQKSVVRRLHAIFRSKVA     GV+PPRTGR+RRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGR DRAEPSDPEKAY IERL
Subjt:  QSRQIQVQKSVVRRLHAIFRSKVAGSLGGGVVPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRPDRAEPSDPEKAYRIERL

Query:  KKLGATVFEGSTDPADAENWLNMLEKCFDVMNFPEERKVRLATFLLQK
        KKLGATVFEGSTD ADAENWLNMLEKCFDVMN PEERKVRLATFLLQK
Subjt:  KKLGATVFEGSTDPADAENWLNMLEKCFDVMNFPEERKVRLATFLLQK

A0A5A7T7T0 Retrotrans_gag domain-containing protein6.2e-8879.5Show/hide
Query:  MTEILSLRLEITVCTL----------------------VSLGLLVKS-------------MCLTSLGSAVFCGMYNSLYTRLASSSHESFKQSRQIQVQK
        MTEILSLRLEITV TL                      VSLGLLVKS             +CLTSLGSAVFCGMYNSLYTRLASSSHESFKQSRQIQVQK
Subjt:  MTEILSLRLEITVCTL----------------------VSLGLLVKS-------------MCLTSLGSAVFCGMYNSLYTRLASSSHESFKQSRQIQVQK

Query:  SVVRRLHAIFRSKVAGSLGGGVVPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRPDRAEPSDPEKAYRIERLKKLGATVFE
        SVVRRLHAIFRSKVA     GV+PPRTGRRRRQNQDGMQGPTQ PSVGESSTLGVRGGAGNEQFA TTQ+IGRPDRAEPSDPEKAY IERLKKLGATVFE
Subjt:  SVVRRLHAIFRSKVAGSLGGGVVPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRPDRAEPSDPEKAYRIERLKKLGATVFE

Query:  GSTDPADAENWLNMLEKCFDVMNFPEERKVRLATFLLQK
        GSTDPAD ENWLNMLEKCFDVMN PEERKVRLATFLLQK
Subjt:  GSTDPADAENWLNMLEKCFDVMNFPEERKVRLATFLLQK

A0A5A7TFC5 Reverse transcriptase2.4e-6377.59Show/hide
Query:  QSRQIQVQKSVVRRLHAIFRSKVAGSLGGG--------------------------VVPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFA
        +S  ++VQKSVVR+LHAIFRSKVAGS GGG                          V+PPRTGRRRRQ QDGMQGPTQGPSVGESSTLGVRGGAGNEQF 
Subjt:  QSRQIQVQKSVVRRLHAIFRSKVAGSLGGG--------------------------VVPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFA

Query:  RTTQEIGRPDRAEPSDPEKAYRIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNFPEERKVRLATFLLQK
        RTT EIGRPDRAEPSDPEKAY IERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMN PEERKVRLATFLLQK
Subjt:  RTTQEIGRPDRAEPSDPEKAYRIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNFPEERKVRLATFLLQK

A0A5A7UI35 Reverse transcriptase3.3e-5797.44Show/hide
Query:  VPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRPDRAEPSDPEKAYRIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVM
        +PPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRPDR EPSDPEKAYRIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVM
Subjt:  VPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRPDRAEPSDPEKAYRIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVM

Query:  NFPEERKVRLATFLLQK
        N PEERKVRLATFLLQK
Subjt:  NFPEERKVRLATFLLQK

A0A5A7UNA3 Reverse transcriptase8.6e-8292.66Show/hide
Query:  LTSLGSAVFCGMYNSLYTRLASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAGSLGGGVVPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNE
        L  LGS VFCGMYNSLYTRLASSSHESFKQSRQIQVQK+VVRRLHAIFRSKVA     GV+PPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNE
Subjt:  LTSLGSAVFCGMYNSLYTRLASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAGSLGGGVVPPRTGRRRRQNQDGMQGPTQGPSVGESSTLGVRGGAGNE

Query:  QFARTTQEIGRPDRAEPSDPEKAYRIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNFPEERKVRLATFLLQK
        QFARTTQEIGR DRAEPSDPEKAY IERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMN PEERKVRLATFLLQK
Subjt:  QFARTTQEIGRPDRAEPSDPEKAYRIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNFPEERKVRLATFLLQK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTTATGAAATTTTCATTAACTACATGACTGAGATCTTGAGCCTGAGGCTAGAGATTACCGTGTGCACACTGGTGTCTTTAGGTTTACTCGTGAAATCGATGTGTTT
GACTAGCCTAGGATCCGCTGTGTTTTGTGGCATGTACAATAGTTTATATACTAGATTGGCAAGTTCATCACATGAAAGTTTTAAGCAGAGTCGACAGATACAGGTACAGA
AAAGCGTTGTTCGTCGGCTTCACGCCATCTTTCGATCTAAGGTAGCAGGTAGTCTGGGAGGGGGAGTCGTGCCACCACGTACTGGTAGACGACGCCGGCAGAATCAGGAC
GGGATGCAAGGTCCTACCCAAGGTCCATCTGTAGGGGAATCTAGTACCCTAGGAGTTCGAGGTGGTGCAGGAAACGAGCAGTTTGCGAGAACAACACAGGAAATAGGAAG
GCCAGATAGAGCAGAGCCTAGTGATCCAGAAAAGGCATACAGAATTGAACGGCTGAAGAAGTTAGGGGCTACAGTGTTTGAAGGTTCCACAGATCCAGCTGATGCAGAGA
ACTGGTTGAATATGCTTGAAAAGTGTTTTGATGTGATGAATTTTCCTGAGGAGCGAAAGGTTAGATTGGCCACATTTTTGTTGCAAAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGAACGTTGGAGCAAATTCGGATATTCATTTGGTGCTTTTTGATGAAGAAAACAGGGCAGTTGAGTGTATCGGTGGAGTTAGAATTTCTATTTAGTATGGTTGGAA
AGCTTATTCAATTAACTACAACTTTCATGAAGAAATTAGGTCGTGTGCGCGCGATTCTGGAAGTGGTTCTGTTTTGAGGGTTATATGTGTTTATGCACGGGGAATCAGAT
TTATATGTCTTCAGATGATTTATGAAATTTTCATTAACTACATGACTGAGATCTTGAGCCTGAGGCTAGAGATTACCGTGTGCACACTGGTGTCTTTAGGTTTACTCGTG
AAATCGATGTGTTTGACTAGCCTAGGATCCGCTGTGTTTTGTGGCATGTACAATAGTTTATATACTAGATTGGCAAGTTCATCACATGAAAGTTTTAAGCAGAGTCGACA
GATACAGGTACAGAAAAGCGTTGTTCGTCGGCTTCACGCCATCTTTCGATCTAAGGTAGCAGGTAGTCTGGGAGGGGGAGTCGTGCCACCACGTACTGGTAGACGACGCC
GGCAGAATCAGGACGGGATGCAAGGTCCTACCCAAGGTCCATCTGTAGGGGAATCTAGTACCCTAGGAGTTCGAGGTGGTGCAGGAAACGAGCAGTTTGCGAGAACAACA
CAGGAAATAGGAAGGCCAGATAGAGCAGAGCCTAGTGATCCAGAAAAGGCATACAGAATTGAACGGCTGAAGAAGTTAGGGGCTACAGTGTTTGAAGGTTCCACAGATCC
AGCTGATGCAGAGAACTGGTTGAATATGCTTGAAAAGTGTTTTGATGTGATGAATTTTCCTGAGGAGCGAAAGGTTAGATTGGCCACATTTTTGTTGCAAAAATAGGCTG
AAGGATGGTGGAAATCTATATTAGCAAGACGCAGTGATGCACATAAGTATTATCCCAGCACATACTGCGAAGCCAAGAGGGATGAATTTCTGGGGTTGAAACAAGGATCA
CTTTCAGTGGCTGAGTATGAGAGGAAGTATACCGAGCTTTCACGGTATGCTGACGTTATTATAGCTTTTGAGAGTGACAGGTGCCGAAGGTTTGAAAGAGGGTTGCGTTT
TGAAATACGTACCCCAGTTACAGCCATTGCTAAGTGGACGAATTTCTCTCAGTTAGTGGAGACTGCCCTTCGTGTGGAGCAGAGTATAACAGAAGAGAAATCGGCAGTGG
AGCTTAGTCGTGGGACTTCAACAGCTAGTGGATTTAGAGGCCGTGAGCAGCGGAGGTTCATGCCTGGGATAAATATTTCAAGCCGTCAAGATTTTAAGAATCGCTCTGGA
GGCCAAGCATCGAGGAACGTGAGTTATGGTAGTGTTTTTCGGAGACAGAGCCAGAGAATACCTAGTCAACCCATTAGATCAACAGTAAGATCGCAACCAGGTCAGGAGTC
CATTGCTAGTACCGTCAGGCGAATACCATGCACGAGTTGTGGCAGGAACCATCGAGGTCAGTGTTTGGTAGGTTCCGGTGTACCAGTGCGAACAGCCAGGACATTTCAAG
AAAGATTGTCCGTAGTTGAACATGACAGTTCAGAGAGATCAGGGAGTTGGGTCCCAGACAGTTGAGCAATCGAGAGTTTCAGTGGTTCCAACAGAGGGCACCAGTGGTGC
AAGGCAAAAGAGAGTTGTTGGAAGACCGAGGCAACAAAGAGTTGTTGGAAGACCTAAGCTATTTTCTTTGCAATTGACT
Protein sequenceShow/hide protein sequence
MIYEIFINYMTEILSLRLEITVCTLVSLGLLVKSMCLTSLGSAVFCGMYNSLYTRLASSSHESFKQSRQIQVQKSVVRRLHAIFRSKVAGSLGGGVVPPRTGRRRRQNQD
GMQGPTQGPSVGESSTLGVRGGAGNEQFARTTQEIGRPDRAEPSDPEKAYRIERLKKLGATVFEGSTDPADAENWLNMLEKCFDVMNFPEERKVRLATFLLQK