; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C032180 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C032180
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr06:24459030..24460046
RNA-Seq ExpressionMELO3C032180
SyntenyMELO3C032180
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043029.1 retrotransposon protein [Cucumis melo var. makuwa]2.6e-3886.02Show/hide
Query:  NWVRSHPAAKGLLNKPFPYYDELTYVFGHDRTTGRFAETFADVGSNEPGGGYDRFDMGMETRSSCPCTARGLTSRRTMYVHPDLLALQRVGPD
        NWVR H AAKGLLNKPFPYYDELTYVFG DR TGRFA TF DVGSNEP  GYD FD+GMETRS  PCTARGLTSR+TMYVHPDLLALQRVGPD
Subjt:  NWVRSHPAAKGLLNKPFPYYDELTYVFGHDRTTGRFAETFADVGSNEPGGGYDRFDMGMETRSSCPCTARGLTSRRTMYVHPDLLALQRVGPD
KAA0043158.1 retrotransposon protein [Cucumis melo var. makuwa]3.5e-4392.47Show/hide
Query:  NWVRSHPAAKGLLNKPFPYYDELTYVFGHDRTTGRFAETFADVGSNEPGGGYDRFDMGMETRSSCPCTARGLTSRRTMYVHPDLLALQRVGPD
        NWVRSHPAAKGLLNK FPYYDELTYVFG DR TGRFAETFADVGSNEPGGGYDRFDMGMETR+S PCTAR LTSRRTMYVH DLLALQRVGPD
Subjt:  NWVRSHPAAKGLLNKPFPYYDELTYVFGHDRTTGRFAETFADVGSNEPGGGYDRFDMGMETRSSCPCTARGLTSRRTMYVHPDLLALQRVGPD
KAA0048382.1 retrotransposon protein [Cucumis melo var. makuwa]5.5e-4493.55Show/hide
Query:  NWVRSHPAAKGLLNKPFPYYDELTYVFGHDRTTGRFAETFADVGSNEPGGGYDRFDMGMETRSSCPCTARGLTSRRTMYVHPDLLALQRVGPD
        NWVRSHPAAKGLLNKP PYYDELTYVFG DRTTGRFAETFADVGSNEPGGGYDRFDMGMETR+S PCTAR LTSRRTMYVH DLLALQRVGPD
Subjt:  NWVRSHPAAKGLLNKPFPYYDELTYVFGHDRTTGRFAETFADVGSNEPGGGYDRFDMGMETRSSCPCTARGLTSRRTMYVHPDLLALQRVGPD
KAA0048405.1 retrotransposon protein [Cucumis melo var. makuwa]5.5e-4492.47Show/hide
Query:  NWVRSHPAAKGLLNKPFPYYDELTYVFGHDRTTGRFAETFADVGSNEPGGGYDRFDMGMETRSSCPCTARGLTSRRTMYVHPDLLALQRVGPD
        NWVRSHPAAKGLLNKPFPYYDELTYVFG DR TGRFAETFADVGSNEPGGGYDRFDMGMET++S PCTAR LTSRRTMYVHPDLLALQRVG D
Subjt:  NWVRSHPAAKGLLNKPFPYYDELTYVFGHDRTTGRFAETFADVGSNEPGGGYDRFDMGMETRSSCPCTARGLTSRRTMYVHPDLLALQRVGPD
KAA0053666.1 retrotransposon protein [Cucumis melo var. makuwa]3.1e-3987.1Show/hide
Query:  NWVRSHPAAKGLLNKPFPYYDELTYVFGHDRTTGRFAETFADVGSNEPGGGYDRFDMGMETRSSCPCTARGLTSRRTMYVHPDLLALQRVGPD
        NWVRSHPAAKGLLNKPFPYYDELTYVFG DR TGRFAETFADVGSNEPGGGYDRFDMG       P TAR LTSRRTMYVHPDLLALQRVG D
Subjt:  NWVRSHPAAKGLLNKPFPYYDELTYVFGHDRTTGRFAETFADVGSNEPGGGYDRFDMGMETRSSCPCTARGLTSRRTMYVHPDLLALQRVGPD
TrEMBL top hitse value%identityAlignment
A0A5A7TK19 Retrotransposon protein1.7e-4392.47Show/hide
Query:  NWVRSHPAAKGLLNKPFPYYDELTYVFGHDRTTGRFAETFADVGSNEPGGGYDRFDMGMETRSSCPCTARGLTSRRTMYVHPDLLALQRVGPD
        NWVRSHPAAKGLLNK FPYYDELTYVFG DR TGRFAETFADVGSNEPGGGYDRFDMGMETR+S PCTAR LTSRRTMYVH DLLALQRVGPD
Subjt:  NWVRSHPAAKGLLNKPFPYYDELTYVFGHDRTTGRFAETFADVGSNEPGGGYDRFDMGMETRSSCPCTARGLTSRRTMYVHPDLLALQRVGPD
A0A5A7TP77 Retrotransposon protein1.3e-3886.02Show/hide
Query:  NWVRSHPAAKGLLNKPFPYYDELTYVFGHDRTTGRFAETFADVGSNEPGGGYDRFDMGMETRSSCPCTARGLTSRRTMYVHPDLLALQRVGPD
        NWVR H AAKGLLNKPFPYYDELTYVFG DR TGRFA TF DVGSNEP  GYD FD+GMETRS  PCTARGLTSR+TMYVHPDLLALQRVGPD
Subjt:  NWVRSHPAAKGLLNKPFPYYDELTYVFGHDRTTGRFAETFADVGSNEPGGGYDRFDMGMETRSSCPCTARGLTSRRTMYVHPDLLALQRVGPD
A0A5A7TXW8 Retrotransposon protein2.6e-4493.55Show/hide
Query:  NWVRSHPAAKGLLNKPFPYYDELTYVFGHDRTTGRFAETFADVGSNEPGGGYDRFDMGMETRSSCPCTARGLTSRRTMYVHPDLLALQRVGPD
        NWVRSHPAAKGLLNKP PYYDELTYVFG DRTTGRFAETFADVGSNEPGGGYDRFDMGMETR+S PCTAR LTSRRTMYVH DLLALQRVGPD
Subjt:  NWVRSHPAAKGLLNKPFPYYDELTYVFGHDRTTGRFAETFADVGSNEPGGGYDRFDMGMETRSSCPCTARGLTSRRTMYVHPDLLALQRVGPD
A0A5A7U437 Retrotransposon protein2.6e-4492.47Show/hide
Query:  NWVRSHPAAKGLLNKPFPYYDELTYVFGHDRTTGRFAETFADVGSNEPGGGYDRFDMGMETRSSCPCTARGLTSRRTMYVHPDLLALQRVGPD
        NWVRSHPAAKGLLNKPFPYYDELTYVFG DR TGRFAETFADVGSNEPGGGYDRFDMGMET++S PCTAR LTSRRTMYVHPDLLALQRVG D
Subjt:  NWVRSHPAAKGLLNKPFPYYDELTYVFGHDRTTGRFAETFADVGSNEPGGGYDRFDMGMETRSSCPCTARGLTSRRTMYVHPDLLALQRVGPD
A0A5A7UHF7 Retrotransposon protein1.5e-3987.1Show/hide
Query:  NWVRSHPAAKGLLNKPFPYYDELTYVFGHDRTTGRFAETFADVGSNEPGGGYDRFDMGMETRSSCPCTARGLTSRRTMYVHPDLLALQRVGPD
        NWVRSHPAAKGLLNKPFPYYDELTYVFG DR TGRFAETFADVGSNEPGGGYDRFDMG       P TAR LTSRRTMYVHPDLLALQRVG D
Subjt:  NWVRSHPAAKGLLNKPFPYYDELTYVFGHDRTTGRFAETFADVGSNEPGGGYDRFDMGMETRSSCPCTARGLTSRRTMYVHPDLLALQRVGPD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATCATTGCGGAGAAGGAATTATTTGTAATTGGGTTAGGTCGCATCCTGCAGCGAAGGGACTCCTGAACAAACCATTCCCGTATTACGACGAACTTACATATGTCTT
TGGTCACGATAGGACGACCGGTCGGTTCGCTGAGACATTTGCAGACGTCGGGTCTAACGAACCTGGTGGCGGATATGACAGATTTGATATGGGGATGGAAACGAGGAGTT
CCTGCCCGTGTACAGCCAGGGGATTGACCTCTCGCAGGACGATGTACGTGCATCCCGACCTTCTCGCACTTCAGAGGGTAGGACCGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAACCTTAAATCGTGCCCCGAGACATGTCTGGACGAAGGAGGAGAAGGGCACTCTTGTGGAATGTTTAATGGAGTTGGTGTCAATGGGGGGATGGAAATCAGATAA
TGGTACGTTCCGCCCAGGTTACCTTGCGCAGTTGGTACGCATGATGGCGGAGAAACTACCTGGATGTCAGGTCCAGCAACAACTCGAACATTTCAGGCCATTGCCGAAAT
GCGGGGGCCAGCGTGTAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCATTGCGGAGAAGGAATTATTTGTAATTGGGTTAGGTCGCATCCTGCAGCGAAGGGACT
CCTGAACAAACCATTCCCGTATTACGACGAACTTACATATGTCTTTGGTCACGATAGGACGACCGGTCGGTTCGCTGAGACATTTGCAGACGTCGGGTCTAACGAACCTG
GTGGCGGATATGACAGATTTGATATGGGGATGGAAACGAGGAGTTCCTGCCCGTGTACAGCCAGGGGATTGACCTCTCGCAGGACGATGTACGTGCATCCCGACCTTCTC
GCACTTCAGAGGGTAGGACCGGATTGAGTGGATCCAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGATGTTGAAGCGATACATCTGGCGCTCGACCAAACAAACGAGCAA
CTCAGGCAGATTGCGGAGTGGCCTGCATGCAACCTTGCAAATGACAACCATGTGCGCACGGAATTCTTCCGCATATTGCGTGAGATGCTAGAACTTACGAGTTTGGATAG
GGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTTCGGGGTTTCGTACTCATGCCTGAGGATGAGAGGGAGGGATTTTGTAGAGTCCTCCTACGAGACATTA
CGAGATAG
Protein sequenceShow/hide protein sequence
MYHCGEGIICNWVRSHPAAKGLLNKPFPYYDELTYVFGHDRTTGRFAETFADVGSNEPGGGYDRFDMGMETRSSCPCTARGLTSRRTMYVHPDLLALQRVGPD