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MELO3C032200 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C032200
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr06:26491973..26493690
RNA-Seq ExpressionMELO3C032200
SyntenyMELO3C032200
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR036789 - Ribosomal protein L6, alpha-beta domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056667.1 retrotransposon protein [Cucumis melo var. makuwa]2.1e-1176.74Show/hide
Query:  MKGHPNARGLLNKPFSYFYDLTMVFGKDRTAGDRCRTPVEMGS
        +KGHPNAR LLNKPF YFYDL +VFG+D   GDRC+TPVEMGS
Subjt:  MKGHPNARGLLNKPFSYFYDLTMVFGKDRTAGDRCRTPVEMGS
KAA0060670.1 retrotransposon protein [Cucumis melo var. makuwa]1.6e-1167.35Show/hide
Query:  LTYVNSMKGHPNARGLLNKPFSYFYDLTMVFGKDRTAGDRCRTPVEMGS
        L + + +KGHPNA+GLLNKPF YFYDL ++FG+DR  G RC+TPVEMGS
Subjt:  LTYVNSMKGHPNARGLLNKPFSYFYDLTMVFGKDRTAGDRCRTPVEMGS
TYK07921.1 hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]6.1e-1174.42Show/hide
Query:  MKGHPNARGLLNKPFSYFYDLTMVFGKDRTAGDRCRTPVEMGS
        +KGHPNA+GLLNKPF YFYDL +VFG+DR  G RC+TPVEM S
Subjt:  MKGHPNARGLLNKPFSYFYDLTMVFGKDRTAGDRCRTPVEMGS
XP_008462939.1 PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]2.1e-1176.74Show/hide
Query:  MKGHPNARGLLNKPFSYFYDLTMVFGKDRTAGDRCRTPVEMGS
        +KGHPNAR LLNKPF YFYDL +VFG+D   GDRC+TPVEMGS
Subjt:  MKGHPNARGLLNKPFSYFYDLTMVFGKDRTAGDRCRTPVEMGS
XP_031741735.1 uncharacterized protein At2g29880-like [Cucumis sativus]4.7e-1176.74Show/hide
Query:  MKGHPNARGLLNKPFSYFYDLTMVFGKDRTAGDRCRTPVEMGS
        +KGHPNARGLLNKPF YFYDL +VFG+DR  G RC+TPVEM S
Subjt:  MKGHPNARGLLNKPFSYFYDLTMVFGKDRTAGDRCRTPVEMGS
TrEMBL top hitse value%identityAlignment
A0A1S3CI24 uncharacterized protein At2g29880-like1.0e-1176.74Show/hide
Query:  MKGHPNARGLLNKPFSYFYDLTMVFGKDRTAGDRCRTPVEMGS
        +KGHPNAR LLNKPF YFYDL +VFG+D   GDRC+TPVEMGS
Subjt:  MKGHPNARGLLNKPFSYFYDLTMVFGKDRTAGDRCRTPVEMGS
A0A5D3C2H8 Retrotransposon protein1.0e-1176.74Show/hide
Query:  MKGHPNARGLLNKPFSYFYDLTMVFGKDRTAGDRCRTPVEMGS
        +KGHPNAR LLNKPF YFYDL +VFG+D   GDRC+TPVEMGS
Subjt:  MKGHPNARGLLNKPFSYFYDLTMVFGKDRTAGDRCRTPVEMGS
A0A5D3C7T4 Uncharacterized protein3.0e-1174.42Show/hide
Query:  MKGHPNARGLLNKPFSYFYDLTMVFGKDRTAGDRCRTPVEMGS
        +KGHPNA+GLLNKPF YFYDL +VFG+DR  G RC+TPVEM S
Subjt:  MKGHPNARGLLNKPFSYFYDLTMVFGKDRTAGDRCRTPVEMGS
A0A5D3CKC1 Retrotransposon protein1.1e-1073.81Show/hide
Query:  MKGHPNARGLLNKPFSYFYDLTMVFGKDRTAGDRCRTPVEMG
        +KGHPNARGLLNK F YFYDL ++FG+DR  G RC+TPVEMG
Subjt:  MKGHPNARGLLNKPFSYFYDLTMVFGKDRTAGDRCRTPVEMG
A0A5D3DJR9 Retrotransposon protein7.8e-1267.35Show/hide
Query:  LTYVNSMKGHPNARGLLNKPFSYFYDLTMVFGKDRTAGDRCRTPVEMGS
        L + + +KGHPNA+GLLNKPF YFYDL ++FG+DR  G RC+TPVEMGS
Subjt:  LTYVNSMKGHPNARGLLNKPFSYFYDLTMVFGKDRTAGDRCRTPVEMGS
SwissProt top hitse value%identityAlignment
P49210 60S ribosomal protein L99.8e-0474.19Show/hide
Query:  SAACLD-KCHVANKDIRKFLDGINVSEKRTI
        SAA ++ KCHV NKDIRKFLDGI VS+K TI
Subjt:  SAACLD-KCHVANKDIRKFLDGINVSEKRTI
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTCTCCATCTCTTCTTCATATTCTCAATTAAACCCTAGCCTCTTTATCTCCTCTACGTCTCTTCATCTCCTCATTTTTCTCTTGTTTCGTCAAGAATCTTTCAGT
AGAGGTCTCTTTTTCTTTTTCTCATACAAAGAAACAATGATAAGAGATACTAAAATCAAATTTCGACAGAGGAAAATCAGATCCCGGTGCAGAAAAGATAGATTT
ATTTGCAGCGCGGCATGCCTAGATAAATGTCATGTCGCGAACAAGGATATACGGAAGTTTCTTGATGGTATCAATGTCAGCGAGAAGAGAACCATAAAATACAAT
TGTAGGCACAAAACAATGCTCAGTAACCCTTTTCACTTGATTTTTGCTTATGAATCTAATAATATACTTACATATGTTAACTCCATGAAAGGACACCCCAATGCT
CGAGGCCTACTAAACAAACCTTTTTCTTACTTCTATGACTTGACAATGGTGTTTGGTAAAGATAGAACTGCTGGTGATAGATGTAGGACACCCGTTGAAATGGGC
TCATAG
mRNA sequenceShow/hide mRNA sequence
CTCTCCATCTCTTCTTCATATTCTCAATTAAACCCTAGCCTCTTTATCTCCTCTACGTCTCTTCATCTCCTCATTTTTCTCTTGTTTCGTCAAGAATCTTTCAGT
AGAGGTCTCTTTTTCTTTTTCTCATACAAAGAAACAATGATAAGAGATACTAAAATCAAATTTCGACAGAGGAAAATCAGATCCCGGTGCAGAAAAGATAGATTT
ATTTGCAGCGCGGCATGCCTAGATAAATGTCATGTCGCGAACAAGGATATACGGAAGTTTCTTGATGGTATCAATGTCAGCGAGAAGAGAACCATAAAATACAAT
TGTAGGCACAAAACAATGCTCAGTAACCCTTTTCACTTGATTTTTGCTTATGAATCTAATAATATACTTACATATGTTAACTCCATGAAAGGACACCCCAATGCT
CGAGGCCTACTAAACAAACCTTTTTCTTACTTCTATGACTTGACAATGGTGTTTGGTAAAGATAGAACTGCTGGTGATAGATGTAGGACACCCGTTGAAATGGGC
TCATAG
Protein sequenceShow/hide protein sequence
LSISSSYSQLNPSLFISSTSLHLLIFLLFRQESFSRGLFFFFSYKETMIRDTKIKFRQRKIRSRCRKDRFICSAACLDKCHVANKDIRKFLDGINVSEKRTIKYN
CRHKTMLSNPFHLIFAYESNNILTYVNSMKGHPNARGLLNKPFSYFYDLTMVFGKDRTAGDRCRTPVEMGS