; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C032206 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C032206
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr06:26761538..26762573
RNA-Seq ExpressionMELO3C032206
SyntenyMELO3C032206
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046363.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-10387.05Show/hide
Query:  RRCVAQTVVVLGGMMKKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAKSFADIGSNHPAGYDAFPADTTPYTDFLPMYSPGL
        R    + +VVLGGMMKKKCIV EK+VFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGR +SFADIGSN PA YDAF AD    T+F PMYSPGL
Subjt:  RRCVAQTVVVLGGMMKKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAKSFADIGSNHPAGYDAFPADTTPYTDFLPMYSPGL

Query:  NMSPDDLMETRTARVSERRNVSSGSKRKRPGHTTDSGDIVRTAIEYENEQLHRIAEWPILQHQDASQTRQEIVRQLEVIPELTLMDRCRLMRILMRNVDD
        NMSPDDLMETRTARVSERRNVSS SKRKR GH TDSGDIVRTAIEY NEQLHRIAEWPILQ QDA+QTRQEIVRQLE IPELTLMDRCRLMRILMRNVDD
Subjt:  NMSPDDLMETRTARVSERRNVSSGSKRKRPGHTTDSGDIVRTAIEYENEQLHRIAEWPILQHQDASQTRQEIVRQLEVIPELTLMDRCRLMRILMRNVDD

Query:  MKAFLEVSDNMKYPYCSIILQENR
        +KAFLEV DNMKYPYCSIILQENR
Subjt:  MKAFLEVSDNMKYPYCSIILQENR

KAA0048280.1 retrotransposon protein [Cucumis melo var. makuwa]9.1e-10892.13Show/hide
Query:  VVLGGMMKKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAKSFADIGSNHPAGYDAFPADTTPYTDFLPMYSPGLNMSPDDLM
        VVLGGMMKKKCI+AEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRA+SFADIGSN PAGYDAF AD    TDFLPMYSPGLNMSPDDLM
Subjt:  VVLGGMMKKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAKSFADIGSNHPAGYDAFPADTTPYTDFLPMYSPGLNMSPDDLM

Query:  ETRTARVSERRNVSSGSKRKRPGHTTDSGDIVRTAIEYENEQLHRIAEWPILQHQDASQTRQEIVRQLEVIPELTLMDRCRLMRILMRNVDDMKAFLEVS
        ETRTARVSERRNVSSGSKRKR GH TDSGDIVRTA+EY NEQLHRIAEWPILQ QDA++TRQEIVRQLEVIPELTLMDRCRLMRI+MRNVDDMKAFLEV 
Subjt:  ETRTARVSERRNVSSGSKRKRPGHTTDSGDIVRTAIEYENEQLHRIAEWPILQHQDASQTRQEIVRQLEVIPELTLMDRCRLMRILMRNVDDMKAFLEVS

Query:  DNMKYPYCSIILQENR
        DNMKYPYCSIILQENR
Subjt:  DNMKYPYCSIILQENR

KAA0050782.1 retrotransposon protein [Cucumis melo var. makuwa]6.7e-10391.39Show/hide
Query:  KKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAKSFADIGSNHPAGYDAFPADTTPYTDFLPMYSPGLNMSPDDLMETRTARV
        +KKCI+AEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRA+SFADIGSN PAGYDAF ADT   TDF PMYSPGLNMSPDDLMETRTARV
Subjt:  KKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAKSFADIGSNHPAGYDAFPADTTPYTDFLPMYSPGLNMSPDDLMETRTARV

Query:  SERRNVSSGSKRKRPGHTTDSGDIVRTAIEYENEQLHRIAEWPILQHQDASQTRQEIVRQLEVIPELTLMDRCRLMRILMRNVDDMKAFLEVSDNMKYPY
        SERRNVSSGSK KRPGH TDSGDIVRTAIEY NEQLHRIAEWPILQ QDA+QTRQEIVRQLE IPELTLMDRCRLMRI+MRNVDDMKAFL+V DNMKYPY
Subjt:  SERRNVSSGSKRKRPGHTTDSGDIVRTAIEYENEQLHRIAEWPILQHQDASQTRQEIVRQLEVIPELTLMDRCRLMRILMRNVDDMKAFLEVSDNMKYPY

Query:  CSIILQENR
        CSIILQENR
Subjt:  CSIILQENR

KAA0065737.1 retrotransposon protein [Cucumis melo var. makuwa]8.2e-10190.91Show/hide
Query:  KKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAKSFADIGSNHPAGYDAFPADTTPYTDFLPMYSPGLNMSPDDLMETRTARV
        +KKCIVAEKEVFDDW  SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRA+SFADIGSN P GYDAF AD  P TDF PMYSPGLNMSPDDLMETRTARV
Subjt:  KKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAKSFADIGSNHPAGYDAFPADTTPYTDFLPMYSPGLNMSPDDLMETRTARV

Query:  SERRNVSSGSKRKRPGHTTDSGDIVRTAIEYENEQLHRIAEWPILQHQDASQTRQEIVRQLEVIPELTLMDRCRLMRILMRNVDDMKAFLEVSDNMKYPY
        SERRNVSS SKRKRPGH TDSGDIVRTAIEY NEQLHRIAEWPILQ QDA+QTRQ+IVRQLE IPELTLMDRCRLMRILMRNVDDMKAFLEV DNMKYPY
Subjt:  SERRNVSSGSKRKRPGHTTDSGDIVRTAIEYENEQLHRIAEWPILQHQDASQTRQEIVRQLEVIPELTLMDRCRLMRILMRNVDDMKAFLEVSDNMKYPY

Query:  CSIILQENR
        CSIILQENR
Subjt:  CSIILQENR

KAA0068123.1 retrotransposon protein [Cucumis melo var. makuwa]2.7e-10488.74Show/hide
Query:  CVAQTVVVLGGMMKKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAKSFADIGSNHPAGYDAFPADTTPYTDFLPMYSPGLNM
        CV QTV+VLGGMMKKKCI+AEKEVFDDW  SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRA+SFADIGSN PAGYDAF AD    TDF P+YS GLNM
Subjt:  CVAQTVVVLGGMMKKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAKSFADIGSNHPAGYDAFPADTTPYTDFLPMYSPGLNM

Query:  SPDDLMETRTARVSERRNVSSGSKRKRPGHTTDSGDIVRTAIEYENEQLHRIAEWPILQHQDASQTRQEIVRQLEVIPELTLMDRCRLMRILMRNVDDMK
        S DDLME RTARVSERRNVSSGSK KRPGH TDSGDIVRTAIEY NEQLHRIAEWPILQ QDA+QTRQEIVRQLE IPELTLMDRCRLMRI+MRNVDDMK
Subjt:  SPDDLMETRTARVSERRNVSSGSKRKRPGHTTDSGDIVRTAIEYENEQLHRIAEWPILQHQDASQTRQEIVRQLEVIPELTLMDRCRLMRILMRNVDDMK

Query:  AFLEVSDNMKYPYCSIILQENR
        AFLEV DNMKYPYCSIILQENR
Subjt:  AFLEVSDNMKYPYCSIILQENR

TrEMBL top hitse value%identityAlignment
A0A5A7SWD8 Retrotransposon protein4.0e-10190.91Show/hide
Query:  KKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAKSFADIGSNHPAGYDAFPADTTPYTDFLPMYSPGLNMSPDDLMETRTARV
        +KKCIVAEKEVFDDW  SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRA+SFADIGSN+P GYDAF AD  P TDF PMYS GLNMSPDDLMETRTARV
Subjt:  KKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAKSFADIGSNHPAGYDAFPADTTPYTDFLPMYSPGLNMSPDDLMETRTARV

Query:  SERRNVSSGSKRKRPGHTTDSGDIVRTAIEYENEQLHRIAEWPILQHQDASQTRQEIVRQLEVIPELTLMDRCRLMRILMRNVDDMKAFLEVSDNMKYPY
        SERRNVSSGSKRKRPGH TDSGDIVRTAIEY NEQLHRIAEWPILQ QDA+QTRQEIV+QLE IPELTLMDRCRLMRILMRNVDDMKAFLEV DNMKYPY
Subjt:  SERRNVSSGSKRKRPGHTTDSGDIVRTAIEYENEQLHRIAEWPILQHQDASQTRQEIVRQLEVIPELTLMDRCRLMRILMRNVDDMKAFLEVSDNMKYPY

Query:  CSIILQENR
        CSIILQENR
Subjt:  CSIILQENR

A0A5A7TS39 Retrotransposon protein8.6e-10487.05Show/hide
Query:  RRCVAQTVVVLGGMMKKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAKSFADIGSNHPAGYDAFPADTTPYTDFLPMYSPGL
        R    + +VVLGGMMKKKCIV EK+VFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGR +SFADIGSN PA YDAF AD    T+F PMYSPGL
Subjt:  RRCVAQTVVVLGGMMKKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAKSFADIGSNHPAGYDAFPADTTPYTDFLPMYSPGL

Query:  NMSPDDLMETRTARVSERRNVSSGSKRKRPGHTTDSGDIVRTAIEYENEQLHRIAEWPILQHQDASQTRQEIVRQLEVIPELTLMDRCRLMRILMRNVDD
        NMSPDDLMETRTARVSERRNVSS SKRKR GH TDSGDIVRTAIEY NEQLHRIAEWPILQ QDA+QTRQEIVRQLE IPELTLMDRCRLMRILMRNVDD
Subjt:  NMSPDDLMETRTARVSERRNVSSGSKRKRPGHTTDSGDIVRTAIEYENEQLHRIAEWPILQHQDASQTRQEIVRQLEVIPELTLMDRCRLMRILMRNVDD

Query:  MKAFLEVSDNMKYPYCSIILQENR
        +KAFLEV DNMKYPYCSIILQENR
Subjt:  MKAFLEVSDNMKYPYCSIILQENR

A0A5A7TYQ6 Retrotransposon protein4.4e-10892.13Show/hide
Query:  VVLGGMMKKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAKSFADIGSNHPAGYDAFPADTTPYTDFLPMYSPGLNMSPDDLM
        VVLGGMMKKKCI+AEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRA+SFADIGSN PAGYDAF AD    TDFLPMYSPGLNMSPDDLM
Subjt:  VVLGGMMKKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAKSFADIGSNHPAGYDAFPADTTPYTDFLPMYSPGLNMSPDDLM

Query:  ETRTARVSERRNVSSGSKRKRPGHTTDSGDIVRTAIEYENEQLHRIAEWPILQHQDASQTRQEIVRQLEVIPELTLMDRCRLMRILMRNVDDMKAFLEVS
        ETRTARVSERRNVSSGSKRKR GH TDSGDIVRTA+EY NEQLHRIAEWPILQ QDA++TRQEIVRQLEVIPELTLMDRCRLMRI+MRNVDDMKAFLEV 
Subjt:  ETRTARVSERRNVSSGSKRKRPGHTTDSGDIVRTAIEYENEQLHRIAEWPILQHQDASQTRQEIVRQLEVIPELTLMDRCRLMRILMRNVDDMKAFLEVS

Query:  DNMKYPYCSIILQENR
        DNMKYPYCSIILQENR
Subjt:  DNMKYPYCSIILQENR

A0A5A7U4M2 Retrotransposon protein3.3e-10391.39Show/hide
Query:  KKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAKSFADIGSNHPAGYDAFPADTTPYTDFLPMYSPGLNMSPDDLMETRTARV
        +KKCI+AEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRA+SFADIGSN PAGYDAF ADT   TDF PMYSPGLNMSPDDLMETRTARV
Subjt:  KKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAKSFADIGSNHPAGYDAFPADTTPYTDFLPMYSPGLNMSPDDLMETRTARV

Query:  SERRNVSSGSKRKRPGHTTDSGDIVRTAIEYENEQLHRIAEWPILQHQDASQTRQEIVRQLEVIPELTLMDRCRLMRILMRNVDDMKAFLEVSDNMKYPY
        SERRNVSSGSK KRPGH TDSGDIVRTAIEY NEQLHRIAEWPILQ QDA+QTRQEIVRQLE IPELTLMDRCRLMRI+MRNVDDMKAFL+V DNMKYPY
Subjt:  SERRNVSSGSKRKRPGHTTDSGDIVRTAIEYENEQLHRIAEWPILQHQDASQTRQEIVRQLEVIPELTLMDRCRLMRILMRNVDDMKAFLEVSDNMKYPY

Query:  CSIILQENR
        CSIILQENR
Subjt:  CSIILQENR

A0A5A7VJ40 Retrotransposon protein1.3e-10488.74Show/hide
Query:  CVAQTVVVLGGMMKKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAKSFADIGSNHPAGYDAFPADTTPYTDFLPMYSPGLNM
        CV QTV+VLGGMMKKKCI+AEKEVFDDW  SHPAAKGLLNKSFVHYDELSYVFGKDRATGGRA+SFADIGSN PAGYDAF AD    TDF P+YS GLNM
Subjt:  CVAQTVVVLGGMMKKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAKSFADIGSNHPAGYDAFPADTTPYTDFLPMYSPGLNM

Query:  SPDDLMETRTARVSERRNVSSGSKRKRPGHTTDSGDIVRTAIEYENEQLHRIAEWPILQHQDASQTRQEIVRQLEVIPELTLMDRCRLMRILMRNVDDMK
        S DDLME RTARVSERRNVSSGSK KRPGH TDSGDIVRTAIEY NEQLHRIAEWPILQ QDA+QTRQEIVRQLE IPELTLMDRCRLMRI+MRNVDDMK
Subjt:  SPDDLMETRTARVSERRNVSSGSKRKRPGHTTDSGDIVRTAIEYENEQLHRIAEWPILQHQDASQTRQEIVRQLEVIPELTLMDRCRLMRILMRNVDDMK

Query:  AFLEVSDNMKYPYCSIILQENR
        AFLEV DNMKYPYCSIILQENR
Subjt:  AFLEVSDNMKYPYCSIILQENR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACTTGCGGAGATGCGTGGCCCAAACTGTAGTGGTTTTGGGTGGAATGATGAAAAAAAAATGCATCGTCGCTGAAAAAGAAGTCTTTGACGATTGGGTAAAGAGTCA
TCCGGCGGCGAAAGGCCTCCTTAATAAGTCGTTTGTCCACTATGACGAACTGTCGTACGTGTTTGGCAAAGATCGTGCAACAGGAGGCCGGGCTAAGAGTTTTGCAGACA
TTGGGTCAAACCATCCTGCTGGGTATGACGCATTTCCTGCTGACACTACGCCATATACGGACTTCCTGCCAATGTATAGTCCAGGATTGAACATGTCGCCTGATGATTTG
ATGGAAACAAGAACCGCTAGGGTCAGTGAACGTAGGAATGTTTCAAGCGGGTCTAAGCGGAAACGTCCAGGACATACCACAGATAGTGGGGACATAGTTCGTACTGCCAT
TGAGTACGAAAATGAACAACTTCATCGCATTGCTGAATGGCCTATCCTACAACATCAAGACGCTAGCCAAACACGTCAAGAGATTGTTCGACAATTGGAGGTCATCCCTG
AGCTCACATTGATGGATAGGTGTCGCTTAATGCGTATACTTATGCGTAACGTCGATGACATGAAAGCTTTCCTTGAAGTTTCGGACAATATGAAGTACCCGTACTGCAGC
ATCATTCTTCAAGAAAACCGATGA
mRNA sequenceShow/hide mRNA sequence
TTCTAGCATGACAAGTTCATCGAGACTACCTAAACATACTTGGACTAAAGAGGAAGAGGCAGGCCTCGTGGAGTTGGTCAATGCTGGTAGGTGGAGGTCCGACAATGGAA
CCTTTCGCCCTGGGTACTTAAATCAGCTAGCGAGAATGATGGCCTTCAAGATCCCAGGTTGTAATATCCATGCTTCAACCATCGATAGTCGAATCAAATTGATGAAGAAA
ATGTTCCATGCACTTGCGGAGATGCGTGGCCCAAACTGTAGTGGTTTTGGGTGGAATGATGAAAAAAAAATGCATCGTCGCTGAAAAAGAAGTCTTTGACGATTGGGTAA
AGAGTCATCCGGCGGCGAAAGGCCTCCTTAATAAGTCGTTTGTCCACTATGACGAACTGTCGTACGTGTTTGGCAAAGATCGTGCAACAGGAGGCCGGGCTAAGAGTTTT
GCAGACATTGGGTCAAACCATCCTGCTGGGTATGACGCATTTCCTGCTGACACTACGCCATATACGGACTTCCTGCCAATGTATAGTCCAGGATTGAACATGTCGCCTGA
TGATTTGATGGAAACAAGAACCGCTAGGGTCAGTGAACGTAGGAATGTTTCAAGCGGGTCTAAGCGGAAACGTCCAGGACATACCACAGATAGTGGGGACATAGTTCGTA
CTGCCATTGAGTACGAAAATGAACAACTTCATCGCATTGCTGAATGGCCTATCCTACAACATCAAGACGCTAGCCAAACACGTCAAGAGATTGTTCGACAATTGGAGGTC
ATCCCTGAGCTCACATTGATGGATAGGTGTCGCTTAATGCGTATACTTATGCGTAACGTCGATGACATGAAAGCTTTCCTTGAAGTTTCGGACAATATGAAGTACCCGTA
CTGCAGCATCATTCTTCAAGAAAACCGATGACTAGTTTGTTTGTTGTATTTGTATTAATGAAACTTTTCTTACTTGGAC
Protein sequenceShow/hide protein sequence
MHLRRCVAQTVVVLGGMMKKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAKSFADIGSNHPAGYDAFPADTTPYTDFLPMYSPGLNMSPDDL
METRTARVSERRNVSSGSKRKRPGHTTDSGDIVRTAIEYENEQLHRIAEWPILQHQDASQTRQEIVRQLEVIPELTLMDRCRLMRILMRNVDDMKAFLEVSDNMKYPYCS
IILQENR