; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C032206.jh1 (gene) of Melon (Harukei-3) v1.41 genome

Gene IDMELO3C032206.jh1
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRetrotransposon protein
Genome locationchr06:27352966..27353999
RNA-Seq ExpressionMELO3C032206.jh1
SyntenyMELO3C032206.jh1
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035629.1 retrotransposon protein [Cucumis melo var. makuwa]4.19e-7894.62Show/hide
Query:  MYSPGLNMSPDDLMETRTARVSEPRNVSSGSKRKRPGHATDSGDIVRTAIEYENEQLHRIVEWPILQHQDASQTRQEIVRQLEAIPELTLMDRCRLMRIL
        MYS GLNMSPDDLMETRTARVSE RNVSSGSKRKRPGHATDSGDIVRTAIEY NEQLHRI EWPILQ QDASQTRQEIVRQLEAIP+LTLMDRCRLM IL
Subjt:  MYSPGLNMSPDDLMETRTARVSEPRNVSSGSKRKRPGHATDSGDIVRTAIEYENEQLHRIVEWPILQHQDASQTRQEIVRQLEAIPELTLMDRCRLMRIL

Query:  MRNVDDMKAFLEVSDNMKYPYCSIILQENR
        MRNVDDMKAFLEVSDNMKYPYCSIILQENR
Subjt:  MRNVDDMKAFLEVSDNMKYPYCSIILQENR
KAA0041028.1 retrotransposon protein [Cucumis melo var. makuwa]1.31e-8194.62Show/hide
Query:  MYSPGLNMSPDDLMETRTARVSEPRNVSSGSKRKRPGHATDSGDIVRTAIEYENEQLHRIVEWPILQHQDASQTRQEIVRQLEAIPELTLMDRCRLMRIL
        MYSPGLNMSPDDLME RTARVSE RNVSSGSKRKRPGHATDSGDIVRTAIEY NEQLHRI EWPILQHQDA+QTRQEIVRQLEAIPELTLMDRCRLMRI 
Subjt:  MYSPGLNMSPDDLMETRTARVSEPRNVSSGSKRKRPGHATDSGDIVRTAIEYENEQLHRIVEWPILQHQDASQTRQEIVRQLEAIPELTLMDRCRLMRIL

Query:  MRNVDDMKAFLEVSDNMKYPYCSIILQENR
        MRNVDDMKAFLEV DNMKYPYCSIILQENR
Subjt:  MRNVDDMKAFLEVSDNMKYPYCSIILQENR
KAA0054687.1 retrotransposon protein [Cucumis melo var. makuwa]4.40e-8093.85Show/hide
Query:  MYSPGLNMSPDDLMETRTARVSEPRNVSSGSKRKRPGHATDSGDIVRTAIEYENEQLHRIVEWPILQHQDASQTRQEIVRQLEAIPELTLMDRCRLMRIL
        MYS GLNMSPDDLMETRTARVSE RNVSSGSKRKRPGHATDSGDIVRTAIEY NEQLHRI EWPILQ QDA+QTRQEIVRQLEAIPELTLMDRCRLMRIL
Subjt:  MYSPGLNMSPDDLMETRTARVSEPRNVSSGSKRKRPGHATDSGDIVRTAIEYENEQLHRIVEWPILQHQDASQTRQEIVRQLEAIPELTLMDRCRLMRIL

Query:  MRNVDDMKAFLEVSDNMKYPYCSIILQENR
        MRNVDDMKAFLEV DNMKYPYC+IILQENR
Subjt:  MRNVDDMKAFLEVSDNMKYPYCSIILQENR
KAA0060663.1 retrotransposon protein [Cucumis melo var. makuwa]2.55e-8196.92Show/hide
Query:  MYSPGLNMSPDDLMETRTARVSEPRNVSSGSKRKRPGHATDSGDIVRTAIEYENEQLHRIVEWPILQHQDASQTRQEIVRQLEAIPELTLMDRCRLMRIL
        MYSPGLNMSPDDLMETRTARVSE RNVS+GSKRKRPGHATDSGDIVRTAIEYENEQLHRI EWPILQHQDASQTRQEIVRQLEAIPELTLMDRCRLMRIL
Subjt:  MYSPGLNMSPDDLMETRTARVSEPRNVSSGSKRKRPGHATDSGDIVRTAIEYENEQLHRIVEWPILQHQDASQTRQEIVRQLEAIPELTLMDRCRLMRIL

Query:  MRNVDDMKAFLEVSDNMKYPYCSIILQENR
        MRNVDDMKAFLEVSDNMKYPY SIILQENR
Subjt:  MRNVDDMKAFLEVSDNMKYPYCSIILQENR
KAA0065892.1 retrotransposon protein [Cucumis melo var. makuwa]7.54e-7994.62Show/hide
Query:  MYSPGLNMSPDDLMETRTARVSEPRNVSSGSKRKRPGHATDSGDIVRTAIEYENEQLHRIVEWPILQHQDASQTRQEIVRQLEAIPELTLMDRCRLMRIL
        MYSPGLNMSPDDLMETRTARVSE RNVSSGSKRKRPGHATDSGDIVRTAIEY NEQLHRI EWPILQ QDA+QTRQEIVRQLE IPELTLMDRCRLMRIL
Subjt:  MYSPGLNMSPDDLMETRTARVSEPRNVSSGSKRKRPGHATDSGDIVRTAIEYENEQLHRIVEWPILQHQDASQTRQEIVRQLEAIPELTLMDRCRLMRIL

Query:  MRNVDDMKAFLEVSDNMKYPYCSIILQENR
        MRNVDDMKAFLEV DNMKYPYCSIILQENR
Subjt:  MRNVDDMKAFLEVSDNMKYPYCSIILQENR
TrEMBL top hitse value%identityAlignment
A0A5A7TDI5 Retrotransposon protein6.36e-8294.62Show/hide
Query:  MYSPGLNMSPDDLMETRTARVSEPRNVSSGSKRKRPGHATDSGDIVRTAIEYENEQLHRIVEWPILQHQDASQTRQEIVRQLEAIPELTLMDRCRLMRIL
        MYSPGLNMSPDDLME RTARVSE RNVSSGSKRKRPGHATDSGDIVRTAIEY NEQLHRI EWPILQHQDA+QTRQEIVRQLEAIPELTLMDRCRLMRI 
Subjt:  MYSPGLNMSPDDLMETRTARVSEPRNVSSGSKRKRPGHATDSGDIVRTAIEYENEQLHRIVEWPILQHQDASQTRQEIVRQLEAIPELTLMDRCRLMRIL

Query:  MRNVDDMKAFLEVSDNMKYPYCSIILQENR
        MRNVDDMKAFLEV DNMKYPYCSIILQENR
Subjt:  MRNVDDMKAFLEVSDNMKYPYCSIILQENR
A0A5A7UJB1 Retrotransposon protein2.13e-8093.85Show/hide
Query:  MYSPGLNMSPDDLMETRTARVSEPRNVSSGSKRKRPGHATDSGDIVRTAIEYENEQLHRIVEWPILQHQDASQTRQEIVRQLEAIPELTLMDRCRLMRIL
        MYS GLNMSPDDLMETRTARVSE RNVSSGSKRKRPGHATDSGDIVRTAIEY NEQLHRI EWPILQ QDA+QTRQEIVRQLEAIPELTLMDRCRLMRIL
Subjt:  MYSPGLNMSPDDLMETRTARVSEPRNVSSGSKRKRPGHATDSGDIVRTAIEYENEQLHRIVEWPILQHQDASQTRQEIVRQLEAIPELTLMDRCRLMRIL

Query:  MRNVDDMKAFLEVSDNMKYPYCSIILQENR
        MRNVDDMKAFLEV DNMKYPYC+IILQENR
Subjt:  MRNVDDMKAFLEVSDNMKYPYCSIILQENR
A0A5A7UXH8 Retrotransposon protein1.24e-8196.92Show/hide
Query:  MYSPGLNMSPDDLMETRTARVSEPRNVSSGSKRKRPGHATDSGDIVRTAIEYENEQLHRIVEWPILQHQDASQTRQEIVRQLEAIPELTLMDRCRLMRIL
        MYSPGLNMSPDDLMETRTARVSE RNVS+GSKRKRPGHATDSGDIVRTAIEYENEQLHRI EWPILQHQDASQTRQEIVRQLEAIPELTLMDRCRLMRIL
Subjt:  MYSPGLNMSPDDLMETRTARVSEPRNVSSGSKRKRPGHATDSGDIVRTAIEYENEQLHRIVEWPILQHQDASQTRQEIVRQLEAIPELTLMDRCRLMRIL

Query:  MRNVDDMKAFLEVSDNMKYPYCSIILQENR
        MRNVDDMKAFLEVSDNMKYPY SIILQENR
Subjt:  MRNVDDMKAFLEVSDNMKYPYCSIILQENR
A0A5A7VC47 Retrotransposon protein3.65e-7994.62Show/hide
Query:  MYSPGLNMSPDDLMETRTARVSEPRNVSSGSKRKRPGHATDSGDIVRTAIEYENEQLHRIVEWPILQHQDASQTRQEIVRQLEAIPELTLMDRCRLMRIL
        MYSPGLNMSPDDLMETRTARVSE RNVSSGSKRKRPGHATDSGDIVRTAIEY NEQLHRI EWPILQ QDA+QTRQEIVRQLE IPELTLMDRCRLMRIL
Subjt:  MYSPGLNMSPDDLMETRTARVSEPRNVSSGSKRKRPGHATDSGDIVRTAIEYENEQLHRIVEWPILQHQDASQTRQEIVRQLEAIPELTLMDRCRLMRIL

Query:  MRNVDDMKAFLEVSDNMKYPYCSIILQENR
        MRNVDDMKAFLEV DNMKYPYCSIILQENR
Subjt:  MRNVDDMKAFLEVSDNMKYPYCSIILQENR
A0A5D3E474 Retrotransposon protein2.03e-7894.62Show/hide
Query:  MYSPGLNMSPDDLMETRTARVSEPRNVSSGSKRKRPGHATDSGDIVRTAIEYENEQLHRIVEWPILQHQDASQTRQEIVRQLEAIPELTLMDRCRLMRIL
        MYS GLNMSPDDLMETRTARVSE RNVSSGSKRKRPGHATDSGDIVRTAIEY NEQLHRI EWPILQ QDASQTRQEIVRQLEAIP+LTLMDRCRLM IL
Subjt:  MYSPGLNMSPDDLMETRTARVSEPRNVSSGSKRKRPGHATDSGDIVRTAIEYENEQLHRIVEWPILQHQDASQTRQEIVRQLEAIPELTLMDRCRLMRIL

Query:  MRNVDDMKAFLEVSDNMKYPYCSIILQENR
        MRNVDDMKAFLEVSDNMKYPYCSIILQENR
Subjt:  MRNVDDMKAFLEVSDNMKYPYCSIILQENR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACAGTCCAGGATTGAACATGTCGCCTGATGATTTGATGGAAACAAGAACCGCTAGGGTCAGTGAACCTAGGAATGTTTCAAGCGGGTCTAAGCGGAAACGT
CCAGGACATGCCACAGATAGTGGGGACATAGTTCGTACTGCCATTGAGTACGAAAATGAACAACTTCATCGCATTGTTGAATGGCCTATCCTACAACATCAAGAC
GCTAGCCAAACACGTCAAGAGATTGTTCGACAGTTGGAGGCCATCCCTGAGCTCACATTGATGGATAGGTGTCGCTTAATGCGTATACTTATGCGTAACGTCGAT
GACATGAAAGCTTTCCTTGAAGTTTCGGACAATATGAAGTACCCGTACTGCAGCATCATTCTTCAAGAAAACCGATGA
mRNA sequenceShow/hide mRNA sequence
TTCTAGCATGACAAGTTCATCGAGACTACCTAAACATACTTGGACTAAAGAGGAAGAGGCAGGCCTCGTGGAGTTGTTCAATGCTGGTGGGGGGAGGTCCGACAA
TGGAACCTTTCGTCCTGGATACTTAAATCAGCTGGCGAGAATGATGGCCTTCAAGATCCCAGGTTGTAATATCCATGCTTCAACCATCGATAGTCGAATCAAATT
GATGAAGAGAATGTTCCATGCACTTGCGGAGATGCGTGGCCCAACTGTAGTGGTTTTGGGTGGAATGATGAAAAAAAATGCATCGTCGCTGAAAAAGAAGTCTTT
GACGATTGGGTAAAGAGTCATCCGGCGGCGAAAGACCTCCTTAATAAGTCGTTTGTCCACTATGACGAACTGTCGTACGTGTTTGGCAAAGATCGTGCAACAGGA
GGTCAGGCTGAGAGTTTTGCAGACATTGGGTCAAACCATCCTGCTGGGTATGACGCATTTCCTGCTGACACTGCGCCAGATACGGACTTCCCGCCAATGTACAGT
CCAGGATTGAACATGTCGCCTGATGATTTGATGGAAACAAGAACCGCTAGGGTCAGTGAACCTAGGAATGTTTCAAGCGGGTCTAAGCGGAAACGTCCAGGACAT
GCCACAGATAGTGGGGACATAGTTCGTACTGCCATTGAGTACGAAAATGAACAACTTCATCGCATTGTTGAATGGCCTATCCTACAACATCAAGACGCTAGCCAA
ACACGTCAAGAGATTGTTCGACAGTTGGAGGCCATCCCTGAGCTCACATTGATGGATAGGTGTCGCTTAATGCGTATACTTATGCGTAACGTCGATGACATGAAA
GCTTTCCTTGAAGTTTCGGACAATATGAAGTACCCGTACTGCAGCATCATTCTTCAAGAAAACCGATGACTAGTTTGTTTGTTGTATTTGTATTAATGAAACTTT
TCTTACTTGGAC
Protein sequenceShow/hide protein sequence
MYSPGLNMSPDDLMETRTARVSEPRNVSSGSKRKRPGHATDSGDIVRTAIEYENEQLHRIVEWPILQHQDASQTRQEIVRQLEAIPELTLMDRCRLMRILMRNVD
DMKAFLEVSDNMKYPYCSIILQENR