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MELO3C032207 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C032207
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr06:26713219..26714026
RNA-Seq ExpressionMELO3C032207
SyntenyMELO3C032207
Gene Ontology termsGO:0016070 - RNA metabolic process (biological process)
GO:0032259 - methylation (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060670.1 retrotransposon protein [Cucumis melo var. makuwa]4.3e-7697.14Show/hide
Query:  MMGPTCSGFGWNEERKCIKAEKLVFDDWVKGHPNAQSLLNKPFPYFYDLEILFGRNRATGGRCKTPVEMGSQIARDTEEDDMDINLENFDILNPHGLEPP
        MM PTCSGFGWNEERKCIKAEKLVFDDWVKGHPNAQ LLNKPFPYFYDLEILFGR+RATGGRCKTPVEMGSQIARDTEEDDMDINLENFDILNPHGLEPP
Subjt:  MMGPTCSGFGWNEERKCIKAEKLVFDDWVKGHPNAQSLLNKPFPYFYDLEILFGRNRATGGRCKTPVEMGSQIARDTEEDDMDINLENFDILNPHGLEPP

Query:  SGEDMLSTPTSMAHDARSCRPSKKRRLYSGDLMDTFCASM
        SGEDMLSTPTSMAHDARS RPSKKRRLYSGDLMDTFCASM
Subjt:  SGEDMLSTPTSMAHDARSCRPSKKRRLYSGDLMDTFCASM

KAA0067273.1 retrotransposon protein [Cucumis melo var. makuwa]6.5e-6482.86Show/hide
Query:  MMGPTCSGFGWNEERKCIKAEKLVFDDWVKGHPNAQSLLNKPFPYFYDLEILFGRNRATGGRCKTPVEMGSQIARDTEEDDMDINLENFDILNPHGLEPP
        MMGP CS FGWNEE+KCI+A+K VFDDWVKGHPNA+ LLNK FPYFYDL+I+FGR+RATGGRCKTP+EMG QIARDTEEDDMDINLE+FDI NPHGLEPP
Subjt:  MMGPTCSGFGWNEERKCIKAEKLVFDDWVKGHPNAQSLLNKPFPYFYDLEILFGRNRATGGRCKTPVEMGSQIARDTEEDDMDINLENFDILNPHGLEPP

Query:  SGEDMLSTPTSMAHDARSCRPSKKRRLYSGDLMDTFCASM
        SGEDM STPTSMAHD  S +PSKKRR YS DLMDTF ASM
Subjt:  SGEDMLSTPTSMAHDARSCRPSKKRRLYSGDLMDTFCASM

TYK07921.1 hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]4.1e-6685.71Show/hide
Query:  MMGPTCSGFGWNEERKCIKAEKLVFDDWVKGHPNAQSLLNKPFPYFYDLEILFGRNRATGGRCKTPVEMGSQIARDTEEDDMDINLENFDILNPHGLEPP
        MMGP CSGFGWNE +KCI+ EK VFDDWVKGHPNAQ LLNKPFPYFYDLE++FGR+RATGGRCKTPVEM SQ ARDTEEDDMDINLE+FDI NPHGLEPP
Subjt:  MMGPTCSGFGWNEERKCIKAEKLVFDDWVKGHPNAQSLLNKPFPYFYDLEILFGRNRATGGRCKTPVEMGSQIARDTEEDDMDINLENFDILNPHGLEPP

Query:  SGEDMLSTPTSMAHDARSCRPSKKRRLYSGDLMDTFCASM
        SGEDM STPTSM HDA S RPSKKRR YSGDLMDTF ASM
Subjt:  SGEDMLSTPTSMAHDARSCRPSKKRRLYSGDLMDTFCASM

TYK10886.1 retrotransposon protein [Cucumis melo var. makuwa]4.5e-6584.29Show/hide
Query:  MMGPTCSGFGWNEERKCIKAEKLVFDDWVKGHPNAQSLLNKPFPYFYDLEILFGRNRATGGRCKTPVEMGSQIARDTEEDDMDINLENFDILNPHGLEPP
        MMGP CS FGWNEE+KCI+A+K VFDDWVKGHPNA+ LLNK FPYFYDL+I+FGR+RATGGRCKTPVEMG QIARDTEEDDMDINLE+FDI NPHGLEPP
Subjt:  MMGPTCSGFGWNEERKCIKAEKLVFDDWVKGHPNAQSLLNKPFPYFYDLEILFGRNRATGGRCKTPVEMGSQIARDTEEDDMDINLENFDILNPHGLEPP

Query:  SGEDMLSTPTSMAHDARSCRPSKKRRLYSGDLMDTFCASM
        SGEDM STPTSMA+D  S RPSKKRR YS DLMDTFCASM
Subjt:  SGEDMLSTPTSMAHDARSCRPSKKRRLYSGDLMDTFCASM

TYK27106.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-6383.57Show/hide
Query:  MMGPTCSGFGWNEERKCIKAEKLVFDDWVKGHPNAQSLLNKPFPYFYDLEILFGRNRATGGRCKTPVEMGSQIARDTEEDDMDINLENFDILNPHGLEPP
        MMGPTCSGFGWNEERKCI+AEK VF+DWVKGH N Q LLNKPFPYFYDL+I+FGR+ ATGGRCKTPVEMGS  ARD EEDDMDINLE+FDI NPHGL+PP
Subjt:  MMGPTCSGFGWNEERKCIKAEKLVFDDWVKGHPNAQSLLNKPFPYFYDLEILFGRNRATGGRCKTPVEMGSQIARDTEEDDMDINLENFDILNPHGLEPP

Query:  SGEDMLSTPTSMAHDARSCRPSKKRRLYSGDLMDTFCASM
        SGEDM STPTSMAHD  S RPSKKR  YSGDLM TFCASM
Subjt:  SGEDMLSTPTSMAHDARSCRPSKKRRLYSGDLMDTFCASM

TrEMBL top hitse value%identityAlignment
A0A5A7VGQ0 Retrotransposon protein3.1e-6482.86Show/hide
Query:  MMGPTCSGFGWNEERKCIKAEKLVFDDWVKGHPNAQSLLNKPFPYFYDLEILFGRNRATGGRCKTPVEMGSQIARDTEEDDMDINLENFDILNPHGLEPP
        MMGP CS FGWNEE+KCI+A+K VFDDWVKGHPNA+ LLNK FPYFYDL+I+FGR+RATGGRCKTP+EMG QIARDTEEDDMDINLE+FDI NPHGLEPP
Subjt:  MMGPTCSGFGWNEERKCIKAEKLVFDDWVKGHPNAQSLLNKPFPYFYDLEILFGRNRATGGRCKTPVEMGSQIARDTEEDDMDINLENFDILNPHGLEPP

Query:  SGEDMLSTPTSMAHDARSCRPSKKRRLYSGDLMDTFCASM
        SGEDM STPTSMAHD  S +PSKKRR YS DLMDTF ASM
Subjt:  SGEDMLSTPTSMAHDARSCRPSKKRRLYSGDLMDTFCASM

A0A5D3C7T4 Uncharacterized protein2.0e-6685.71Show/hide
Query:  MMGPTCSGFGWNEERKCIKAEKLVFDDWVKGHPNAQSLLNKPFPYFYDLEILFGRNRATGGRCKTPVEMGSQIARDTEEDDMDINLENFDILNPHGLEPP
        MMGP CSGFGWNE +KCI+ EK VFDDWVKGHPNAQ LLNKPFPYFYDLE++FGR+RATGGRCKTPVEM SQ ARDTEEDDMDINLE+FDI NPHGLEPP
Subjt:  MMGPTCSGFGWNEERKCIKAEKLVFDDWVKGHPNAQSLLNKPFPYFYDLEILFGRNRATGGRCKTPVEMGSQIARDTEEDDMDINLENFDILNPHGLEPP

Query:  SGEDMLSTPTSMAHDARSCRPSKKRRLYSGDLMDTFCASM
        SGEDM STPTSM HDA S RPSKKRR YSGDLMDTF ASM
Subjt:  SGEDMLSTPTSMAHDARSCRPSKKRRLYSGDLMDTFCASM

A0A5D3CKC1 Retrotransposon protein2.2e-6584.29Show/hide
Query:  MMGPTCSGFGWNEERKCIKAEKLVFDDWVKGHPNAQSLLNKPFPYFYDLEILFGRNRATGGRCKTPVEMGSQIARDTEEDDMDINLENFDILNPHGLEPP
        MMGP CS FGWNEE+KCI+A+K VFDDWVKGHPNA+ LLNK FPYFYDL+I+FGR+RATGGRCKTPVEMG QIARDTEEDDMDINLE+FDI NPHGLEPP
Subjt:  MMGPTCSGFGWNEERKCIKAEKLVFDDWVKGHPNAQSLLNKPFPYFYDLEILFGRNRATGGRCKTPVEMGSQIARDTEEDDMDINLENFDILNPHGLEPP

Query:  SGEDMLSTPTSMAHDARSCRPSKKRRLYSGDLMDTFCASM
        SGEDM STPTSMA+D  S RPSKKRR YS DLMDTFCASM
Subjt:  SGEDMLSTPTSMAHDARSCRPSKKRRLYSGDLMDTFCASM

A0A5D3DJR9 Retrotransposon protein2.1e-7697.14Show/hide
Query:  MMGPTCSGFGWNEERKCIKAEKLVFDDWVKGHPNAQSLLNKPFPYFYDLEILFGRNRATGGRCKTPVEMGSQIARDTEEDDMDINLENFDILNPHGLEPP
        MM PTCSGFGWNEERKCIKAEKLVFDDWVKGHPNAQ LLNKPFPYFYDLEILFGR+RATGGRCKTPVEMGSQIARDTEEDDMDINLENFDILNPHGLEPP
Subjt:  MMGPTCSGFGWNEERKCIKAEKLVFDDWVKGHPNAQSLLNKPFPYFYDLEILFGRNRATGGRCKTPVEMGSQIARDTEEDDMDINLENFDILNPHGLEPP

Query:  SGEDMLSTPTSMAHDARSCRPSKKRRLYSGDLMDTFCASM
        SGEDMLSTPTSMAHDARS RPSKKRRLYSGDLMDTFCASM
Subjt:  SGEDMLSTPTSMAHDARSCRPSKKRRLYSGDLMDTFCASM

A0A5D3DTS8 Retrotransposon protein7.0e-6483.57Show/hide
Query:  MMGPTCSGFGWNEERKCIKAEKLVFDDWVKGHPNAQSLLNKPFPYFYDLEILFGRNRATGGRCKTPVEMGSQIARDTEEDDMDINLENFDILNPHGLEPP
        MMGPTCSGFGWNEERKCI+AEK VF+DWVKGH N Q LLNKPFPYFYDL+I+FGR+ ATGGRCKTPVEMGS  ARD EEDDMDINLE+FDI NPHGL+PP
Subjt:  MMGPTCSGFGWNEERKCIKAEKLVFDDWVKGHPNAQSLLNKPFPYFYDLEILFGRNRATGGRCKTPVEMGSQIARDTEEDDMDINLENFDILNPHGLEPP

Query:  SGEDMLSTPTSMAHDARSCRPSKKRRLYSGDLMDTFCASM
        SGEDM STPTSMAHD  S RPSKKR  YSGDLM TFCASM
Subjt:  SGEDMLSTPTSMAHDARSCRPSKKRRLYSGDLMDTFCASM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G30140.1 unknown protein2.0e-0742.59Show/hide
Query:  SGFGWNEERKCIKAEKLVFDDWVKGHPNAQSLLNKPFPYFYDLEILFGRNRATG
        SGFGW+ E K   A   V+ D++K HPN + +  +   +F DL+I+FG   ATG
Subjt:  SGFGWNEERKCIKAEKLVFDDWVKGHPNAQSLLNKPFPYFYDLEILFGRNRATG

AT4G02210.1 unknown protein1.2e-0726.83Show/hide
Query:  GFGWNEERKCIKAEKLVFDDWVKGHPNAQSLLNKPFPYFYDLEILFGRNRATGGRCKTPV-----EMGSQIARDTEEDDMDINLENFDILNPHGLEPPSG
        GF W+ ER+ + A+  V+ D++K H +A+  + +P PY+ DL +L G +      C   +     E   Q  + +   D+ I+ E  D  N    +P + 
Subjt:  GFGWNEERKCIKAEKLVFDDWVKGHPNAQSLLNKPFPYFYDLEILFGRNRATGGRCKTPV-----EMGSQIARDTEEDDMDINLENFDILNPHGLEPPSG

Query:  EDMLSTPTSMAHDARSCRPSKKR
         D L+       D     P K R
Subjt:  EDMLSTPTSMAHDARSCRPSKKR

AT4G02210.2 unknown protein1.2e-0726.83Show/hide
Query:  GFGWNEERKCIKAEKLVFDDWVKGHPNAQSLLNKPFPYFYDLEILFGRNRATGGRCKTPV-----EMGSQIARDTEEDDMDINLENFDILNPHGLEPPSG
        GF W+ ER+ + A+  V+ D++K H +A+  + +P PY+ DL +L G +      C   +     E   Q  + +   D+ I+ E  D  N    +P + 
Subjt:  GFGWNEERKCIKAEKLVFDDWVKGHPNAQSLLNKPFPYFYDLEILFGRNRATGGRCKTPV-----EMGSQIARDTEEDDMDINLENFDILNPHGLEPPSG

Query:  EDMLSTPTSMAHDARSCRPSKKR
         D L+       D     P K R
Subjt:  EDMLSTPTSMAHDARSCRPSKKR

AT5G27260.1 unknown protein2.0e-0733.33Show/hide
Query:  SGFGWNEERKCIKAEKLVFDDWVKGHPNAQSLLNKPFPYFYDLEILFGRNRATG----GRCKTP---VEMGSQIARDTEEDDMDINLENFDILNPH
        SGFGW+   K   A   V+ D++K HPN + L    F +F +L+I+FG   ATG    G C +         +  R    DD D N+  +D    H
Subjt:  SGFGWNEERKCIKAEKLVFDDWVKGHPNAQSLLNKPFPYFYDLEILFGRNRATG----GRCKTP---VEMGSQIARDTEEDDMDINLENFDILNPH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGGGCCAACGTGTAGTGGGTTTGGCTGGAATGAGGAACGAAAGTGCATTAAGGCAGAGAAACTCGTGTTCGATGACTGGGTTAAGGGACACCCCAATGCTCAAAG
CCTACTAAATAAACCATTTCCTTACTTCTATGATTTGGAAATTTTGTTTGGTAGAAATAGGGCTACTGGTGGTAGATGTAAGACACCCGTTGAAATGGGCTCACAGATTG
CAAGAGATACTGAGGAAGATGACATGGACATTAATCTTGAAAACTTTGATATTCTAAATCCACATGGACTCGAGCCACCTTCGGGGGAGGACATGCTATCCACTCCAACA
AGTATGGCACATGATGCGAGATCATGTAGACCAAGTAAGAAAAGACGGTTATATTCAGGGGACCTTATGGACACATTTTGTGCAAGTATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGGGGCCAACGTGTAGTGGGTTTGGCTGGAATGAGGAACGAAAGTGCATTAAGGCAGAGAAACTCGTGTTCGATGACTGGGTTAAGGGACACCCCAATGCTCAAAG
CCTACTAAATAAACCATTTCCTTACTTCTATGATTTGGAAATTTTGTTTGGTAGAAATAGGGCTACTGGTGGTAGATGTAAGACACCCGTTGAAATGGGCTCACAGATTG
CAAGAGATACTGAGGAAGATGACATGGACATTAATCTTGAAAACTTTGATATTCTAAATCCACATGGACTCGAGCCACCTTCGGGGGAGGACATGCTATCCACTCCAACA
AGTATGGCACATGATGCGAGATCATGTAGACCAAGTAAGAAAAGACGGTTATATTCAGGGGACCTTATGGACACATTTTGTGCAAGTATGTGAGAAACTTCCAAGGAAAT
TGGAAAGATTGCTACATGGCAGAGAGAAAAAATGGAAATAGAATCATCCCTACACAAATGATTATATGCTGAATTACAAGACTATTCCTGGAATGGACGTGGATGATTGT
TTAATTGTAGCCGAGTCTCTATTACTTGATCCCACGATGTTGCATGCATTCCTTGACTACCTAGCAGAATGGAAGTATAGGAAATGCATGCATATCTTAGGAAGACAATC
ATAACTATAACTAAAGTAACTTTACTTGATTTTCACTTTTGTTTGATCTTTTGGTTATGCTTACTTTTGAAAC
Protein sequenceShow/hide protein sequence
MMGPTCSGFGWNEERKCIKAEKLVFDDWVKGHPNAQSLLNKPFPYFYDLEILFGRNRATGGRCKTPVEMGSQIARDTEEDDMDINLENFDILNPHGLEPPSGEDMLSTPT
SMAHDARSCRPSKKRRLYSGDLMDTFCASM