; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C032575 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C032575
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr01:18587313..18588089
RNA-Seq ExpressionMELO3C032575
SyntenyMELO3C032575
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR027806 - Harbinger transposase-derived nuclease domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031556.1 retrotransposon protein [Cucumis melo var. makuwa]5.8e-8193.67Show/hide
Query:  MVAMFLHVLAHDVKNRVIQREFVRSGETVSLHFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFENCLGALDGTYIKVNVPATDRPTFRTRKGKIATN
        MVAMFLHVLAHDVKNRVIQREFVRSGETVS HFN+VLLAV+RLYEELIKRPVPVT+NCNDQRWKCFENCLGALDGTYIKVNVPA DRPTFRTRKG+IATN
Subjt:  MVAMFLHVLAHDVKNRVIQREFVRSGETVSLHFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFENCLGALDGTYIKVNVPATDRPTFRTRKGKIATN

Query:  VLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLYDGGYQNAEGF
        VLGVCDTKGDFVYVLAGWEGSAADSRILRDA+SRENGLQVPKGYYYL D GY NAEGF
Subjt:  VLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLYDGGYQNAEGF

KAA0032767.1 retrotransposon protein [Cucumis melo var. makuwa]4.4e-8193.67Show/hide
Query:  MVAMFLHVLAHDVKNRVIQREFVRSGETVSLHFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFENCLGALDGTYIKVNVPATDRPTFRTRKGKIATN
        MVAMFLHVLAHD+KNRVIQREFVRSGETVS HFN+VLLAV+RLYEELIKRPVPVT+NCNDQRWKCFENCLGALDGTYIKVNVPA DRPTFRTRKGKIATN
Subjt:  MVAMFLHVLAHDVKNRVIQREFVRSGETVSLHFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFENCLGALDGTYIKVNVPATDRPTFRTRKGKIATN

Query:  VLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLYDGGYQNAEGF
        VLGVCDTKGDFVYVLAGWEGSAADSRILRDA+SRENGLQVPKGYYYL D GY NAEGF
Subjt:  VLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLYDGGYQNAEGF

KAA0056561.1 retrotransposon protein [Cucumis melo var. makuwa]5.8e-8193.67Show/hide
Query:  MVAMFLHVLAHDVKNRVIQREFVRSGETVSLHFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFENCLGALDGTYIKVNVPATDRPTFRTRKGKIATN
        MVAMFLHVLAHDVKNRVIQREFVRSGETVS HFN+VLLAV+RLYEELIKRPVPVT+NCNDQRWKCFENCLGALDGTYIKVNVPA DRPTFRTRKG+IATN
Subjt:  MVAMFLHVLAHDVKNRVIQREFVRSGETVSLHFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFENCLGALDGTYIKVNVPATDRPTFRTRKGKIATN

Query:  VLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLYDGGYQNAEGF
        VLGVCDTKGDFVYVLAGWEGSAADSRILRDA+SRENGLQVPKGYYYL D GY NAEGF
Subjt:  VLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLYDGGYQNAEGF

KAA0064809.1 retrotransposon protein [Cucumis melo var. makuwa]5.8e-8193.67Show/hide
Query:  MVAMFLHVLAHDVKNRVIQREFVRSGETVSLHFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFENCLGALDGTYIKVNVPATDRPTFRTRKGKIATN
        MVAMFLHVLAHDVKNRVIQREFVRSGETVS HFN+VLLAV+RLYEELIKRPVPVT+NCNDQRWKCFENCLGALDGTYIKVNVPA DRPTFRTRKG+IATN
Subjt:  MVAMFLHVLAHDVKNRVIQREFVRSGETVSLHFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFENCLGALDGTYIKVNVPATDRPTFRTRKGKIATN

Query:  VLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLYDGGYQNAEGF
        VLGVCDTKGDFVYVLAGWEGSAADSRILRDA+SRENGLQVPKGYYYL D GY NAEGF
Subjt:  VLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLYDGGYQNAEGF

TYK22656.1 retrotransposon protein [Cucumis melo var. makuwa]1.0e-10198.34Show/hide
Query:  MVAMFLHVLAHDVKNRVIQREFVRSGETVSLHFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFENCLGALDGTYIKVNVPATDRPTFRTRKGKIATN
        MVAMFLHVLAHDVKNRVIQREFVRSGETVSLHFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFENCLGALDGTYIKVNVPATDRPTFRTRKGKIATN
Subjt:  MVAMFLHVLAHDVKNRVIQREFVRSGETVSLHFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFENCLGALDGTYIKVNVPATDRPTFRTRKGKIATN

Query:  VLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLYDGGYQNAEGFWSRIEASDTICKSDWWRKCANKC
        VLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLYDGGY+NAEGFWSRIEASD ICKSDWWRKC NKC
Subjt:  VLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLYDGGYQNAEGFWSRIEASDTICKSDWWRKCANKC

TrEMBL top hitse value%identityAlignment
A0A5A7STY2 Retrotransposon protein2.1e-8193.67Show/hide
Query:  MVAMFLHVLAHDVKNRVIQREFVRSGETVSLHFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFENCLGALDGTYIKVNVPATDRPTFRTRKGKIATN
        MVAMFLHVLAHD+KNRVIQREFVRSGETVS HFN+VLLAV+RLYEELIKRPVPVT+NCNDQRWKCFENCLGALDGTYIKVNVPA DRPTFRTRKGKIATN
Subjt:  MVAMFLHVLAHDVKNRVIQREFVRSGETVSLHFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFENCLGALDGTYIKVNVPATDRPTFRTRKGKIATN

Query:  VLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLYDGGYQNAEGF
        VLGVCDTKGDFVYVLAGWEGSAADSRILRDA+SRENGLQVPKGYYYL D GY NAEGF
Subjt:  VLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLYDGGYQNAEGF

A0A5A7UST8 Retrotransposon protein2.8e-8193.67Show/hide
Query:  MVAMFLHVLAHDVKNRVIQREFVRSGETVSLHFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFENCLGALDGTYIKVNVPATDRPTFRTRKGKIATN
        MVAMFLHVLAHDVKNRVIQREFVRSGETVS HFN+VLLAV+RLYEELIKRPVPVT+NCNDQRWKCFENCLGALDGTYIKVNVPA DRPTFRTRKG+IATN
Subjt:  MVAMFLHVLAHDVKNRVIQREFVRSGETVSLHFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFENCLGALDGTYIKVNVPATDRPTFRTRKGKIATN

Query:  VLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLYDGGYQNAEGF
        VLGVCDTKGDFVYVLAGWEGSAADSRILRDA+SRENGLQVPKGYYYL D GY NAEGF
Subjt:  VLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLYDGGYQNAEGF

A0A5A7VH63 Retrotransposon protein2.8e-8193.67Show/hide
Query:  MVAMFLHVLAHDVKNRVIQREFVRSGETVSLHFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFENCLGALDGTYIKVNVPATDRPTFRTRKGKIATN
        MVAMFLHVLAHDVKNRVIQREFVRSGETVS HFN+VLLAV+RLYEELIKRPVPVT+NCNDQRWKCFENCLGALDGTYIKVNVPA DRPTFRTRKG+IATN
Subjt:  MVAMFLHVLAHDVKNRVIQREFVRSGETVSLHFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFENCLGALDGTYIKVNVPATDRPTFRTRKGKIATN

Query:  VLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLYDGGYQNAEGF
        VLGVCDTKGDFVYVLAGWEGSAADSRILRDA+SRENGLQVPKGYYYL D GY NAEGF
Subjt:  VLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLYDGGYQNAEGF

A0A5D3D7X8 Retrotransposon protein2.8e-8193.67Show/hide
Query:  MVAMFLHVLAHDVKNRVIQREFVRSGETVSLHFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFENCLGALDGTYIKVNVPATDRPTFRTRKGKIATN
        MVAMFLHVLAHDVKNRVIQREFVRSGETVS HFN+VLLAV+RLYEELIKRPVPVT+NCNDQRWKCFENCLGALDGTYIKVNVPA DRPTFRTRKG+IATN
Subjt:  MVAMFLHVLAHDVKNRVIQREFVRSGETVSLHFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFENCLGALDGTYIKVNVPATDRPTFRTRKGKIATN

Query:  VLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLYDGGYQNAEGF
        VLGVCDTKGDFVYVLAGWEGSAADSRILRDA+SRENGLQVPKGYYYL D GY NAEGF
Subjt:  VLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLYDGGYQNAEGF

A0A5D3DGC8 Retrotransposon protein4.9e-10298.34Show/hide
Query:  MVAMFLHVLAHDVKNRVIQREFVRSGETVSLHFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFENCLGALDGTYIKVNVPATDRPTFRTRKGKIATN
        MVAMFLHVLAHDVKNRVIQREFVRSGETVSLHFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFENCLGALDGTYIKVNVPATDRPTFRTRKGKIATN
Subjt:  MVAMFLHVLAHDVKNRVIQREFVRSGETVSLHFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFENCLGALDGTYIKVNVPATDRPTFRTRKGKIATN

Query:  VLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLYDGGYQNAEGFWSRIEASDTICKSDWWRKCANKC
        VLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLYDGGY+NAEGFWSRIEASD ICKSDWWRKC NKC
Subjt:  VLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLYDGGYQNAEGFWSRIEASDTICKSDWWRKCANKC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43722.1 unknown protein3.7e-1730.23Show/hide
Query:  VAMFLHVLAHDVKNRVIQREFVRSGETVSLHFNLVLLAVVRLYEELIKRP-------VPVTNNCNDQRWKCFENCLGALDGTYIKVNVPATDRPTFRTRK
        VAMFL +  H+   R +   F R+ ETV   F  VL A   L  + I+ P       +P     + + W  F   +GA+DGT++ V V    +  +  R 
Subjt:  VAMFLHVLAHDVKNRVIQREFVRSGETVSLHFNLVLLAVVRLYEELIKRP-------VPVTNNCNDQRWKCFENCLGALDGTYIKVNVPATDRPTFRTRK

Query:  GKIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKG-YYYLYDGGYQNAEGFWSRIEAS
           + N++ +CD K  F Y+  G  GS  D+ +L+ A   ++   +P    YYL D GY N +G  +   +S
Subjt:  GKIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKG-YYYLYDGGYQNAEGFWSRIEAS

AT5G28950.1 unknown protein6.3e-1750Show/hide
Query:  FENCLGALDGTYIKVNVPATDRPTFRTRKGKIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSR-ENGLQVPK
        F++C+GA+D T+I   V     P+FR RKG I+ N+L  C+   +F+YVL+GWEGSA DS++L DAL+R  N L VP+
Subjt:  FENCLGALDGTYIKVNVPATDRPTFRTRKGKIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSR-ENGLQVPK

AT5G35695.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)4.2e-0547.92Show/hide
Query:  FVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLYDGGYQNAEGF
        F+YVL+GWEGSA DSR+L DAL +          +YL D G+ N   F
Subjt:  FVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLYDGGYQNAEGF

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)2.7e-2840.13Show/hide
Query:  VAMFLHVLAHDVKNRVIQREFVRSGETVSLHFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFENCLGALDGTYIKVNVPATDRPTFRTRKGKIATNV
        +A+FL ++ H+++ R +Q  F  SGET+S HFN VL AV+ + ++  +         ND  +  F++C+G +D  +I V V   ++  FR   G +  NV
Subjt:  VAMFLHVLAHDVKNRVIQREFVRSGETVSLHFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFENCLGALDGTYIKVNVPATDRPTFRTRKGKIATNV

Query:  LGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLYDGGYQNAEGF
        L        F YVLAGWEGSA+D ++L  AL+R N LQVP+G YY+ D  Y N  GF
Subjt:  LGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLYDGGYQNAEGF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAGCAATGTTCTTGCACGTCCTTGCCCATGACGTGAAGAACCGCGTAATTCAAAGGGAATTTGTACGGTCCGGTGAGACAGTATCGCTACATTTTAACCTTGTACT
ATTAGCTGTCGTCCGACTATACGAGGAGTTAATAAAGCGACCTGTTCCGGTGACAAACAACTGTAATGATCAACGTTGGAAGTGTTTCGAGAATTGCCTTGGCGCGTTAG
ACGGGACGTACATAAAGGTGAACGTCCCCGCAACAGATCGGCCTACATTCAGAACGCGTAAGGGGAAAATTGCCACAAACGTACTAGGCGTGTGCGACACGAAAGGGGAT
TTCGTTTATGTCCTCGCCGGTTGGGAAGGATCGGCGGCAGACTCGCGGATTCTACGTGATGCCCTGTCACGAGAAAATGGACTACAAGTGCCAAAGGGATATTATTATCT
GTACGATGGGGGTTATCAAAACGCCGAGGGTTTCTGGTCACGTATAGAGGCCAGCGATACCATTTGCAAGAGTGACTGGTGGAGGAAATGCGCCAACAAATGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTAGCAATGTTCTTGCACGTCCTTGCCCATGACGTGAAGAACCGCGTAATTCAAAGGGAATTTGTACGGTCCGGTGAGACAGTATCGCTACATTTTAACCTTGTACT
ATTAGCTGTCGTCCGACTATACGAGGAGTTAATAAAGCGACCTGTTCCGGTGACAAACAACTGTAATGATCAACGTTGGAAGTGTTTCGAGAATTGCCTTGGCGCGTTAG
ACGGGACGTACATAAAGGTGAACGTCCCCGCAACAGATCGGCCTACATTCAGAACGCGTAAGGGGAAAATTGCCACAAACGTACTAGGCGTGTGCGACACGAAAGGGGAT
TTCGTTTATGTCCTCGCCGGTTGGGAAGGATCGGCGGCAGACTCGCGGATTCTACGTGATGCCCTGTCACGAGAAAATGGACTACAAGTGCCAAAGGGATATTATTATCT
GTACGATGGGGGTTATCAAAACGCCGAGGGTTTCTGGTCACGTATAGAGGCCAGCGATACCATTTGCAAGAGTGACTGGTGGAGGAAATGCGCCAACAAATGCTAAGGAG
TACTTTAACATGAAGCACTCCTCGACAAGGAATGTCATTGAGCGCGCCTTCGGTGTTCTTAAGGGTCGTTG
Protein sequenceShow/hide protein sequence
MVAMFLHVLAHDVKNRVIQREFVRSGETVSLHFNLVLLAVVRLYEELIKRPVPVTNNCNDQRWKCFENCLGALDGTYIKVNVPATDRPTFRTRKGKIATNVLGVCDTKGD
FVYVLAGWEGSAADSRILRDALSRENGLQVPKGYYYLYDGGYQNAEGFWSRIEASDTICKSDWWRKCANKC