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MELO3C032676 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C032676
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr07:10746736..10747647
RNA-Seq ExpressionMELO3C032676
SyntenyMELO3C032676
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0057564.1 Transposon TX1 uncharacterized [Cucumis melo var. makuwa]7.5e-2552.78Show/hide
Query:  RSLLDKLLVYFDWDEAFANTKATQQVRTSSDHFSILLEAGAYKWGPLSPFIFCKNWLLDKYCCRMIENSLSLSTPPGWMGFTLTNKLWNIKGQLKFWHSD
        RSLLD+ LV  DWDE+FA+T+A+++ R +SDH  ILLEAGA++WGP SPF FC +WLLDK C ++I NSL+      W+GF + +KL ++K  LK WH +
Subjt:  RSLLDKLLVYFDWDEAFANTKATQQVRTSSDHFSILLEAGAYKWGPLSPFIFCKNWLLDKYCCRMIENSLSLSTPPGWMGFTLTNKLWNIKGQLKFWHSD

Query:  YKREQKSP
         +R +K P
Subjt:  YKREQKSP

TYJ98683.1 hypothetical protein E5676_scaffold429G00120 [Cucumis melo var. makuwa]5.9e-2232.43Show/hide
Query:  MYGPTDYRWRKLIWPELLSLIEYCTEACCLGEDINMTRPGGEWFPEGRITCSMRKFNKFI------EVPLLNGKFSVKRVQQSHSSPGFLIPFGHTRTPK
        +YGP DY  R+ +W  L+SL  YCT A C+G   N+TR   E FP  + T  MR+FN  I      E+PL NG+ +  R   S S               
Subjt:  MYGPTDYRWRKLIWPELLSLIEYCTEACCLGEDINMTRPGGEWFPEGRITCSMRKFNKFI------EVPLLNGKFSVKRVQQSHSSPGFLIPFGHTRTPK

Query:  VVTPEFWMQIGKTQTFQCQPYSSPDFLIVYLFPLPQPHPRSLLDKLLVYFDWDEAFANTKATQQVRTSSDHFSILLEAGAYKWGPLSPFIFCKNWLLDKY
                                               RSLLD   +  +WDE   N++  ++  T SDHF +LLEAG+ KWGP SPF F  +WL    
Subjt:  VVTPEFWMQIGKTQTFQCQPYSSPDFLIVYLFPLPQPHPRSLLDKLLVYFDWDEAFANTKATQQVRTSSDHFSILLEAGAYKWGPLSPFIFCKNWLLDKY

Query:  CCRMIENSLSLSTPPGWMGFTL
        C R+I+   ++++   W GF L
Subjt:  CCRMIENSLSLSTPPGWMGFTL

XP_038884536.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X2 [Benincasa hispida]2.1e-1940.77Show/hide
Query:  YSSPDFLIVYLFPLPQPHPR-----SLLDKLLVYFDWDEAFANTKATQQVRTSSDHFSILLEAGAYKWGPLSPFIFCKNWLLDKYCCRMIENSLSLSTPP
        + S  F  +Y  PLP          S     LV  +WDE F +++ ++Q RT SDHF +L EAGA++WGP SPF FC +WL +K CCR+IENS  +    
Subjt:  YSSPDFLIVYLFPLPQPHPR-----SLLDKLLVYFDWDEAFANTKATQQVRTSSDHFSILLEAGAYKWGPLSPFIFCKNWLLDKYCCRMIENSLSLSTPP

Query:  GWMGFTLTNKLWNIKGQLKFWHSDYKREQK
         W GF L ++L  +K  +K W ++++++QK
Subjt:  GWMGFTLTNKLWNIKGQLKFWHSDYKREQK

XP_038884537.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X3 [Benincasa hispida]2.1e-1940.77Show/hide
Query:  YSSPDFLIVYLFPLPQPHPR-----SLLDKLLVYFDWDEAFANTKATQQVRTSSDHFSILLEAGAYKWGPLSPFIFCKNWLLDKYCCRMIENSLSLSTPP
        + S  F  +Y  PLP          S     LV  +WDE F +++ ++Q RT SDHF +L EAGA++WGP SPF FC +WL +K CCR+IENS  +    
Subjt:  YSSPDFLIVYLFPLPQPHPR-----SLLDKLLVYFDWDEAFANTKATQQVRTSSDHFSILLEAGAYKWGPLSPFIFCKNWLLDKYCCRMIENSLSLSTPP

Query:  GWMGFTLTNKLWNIKGQLKFWHSDYKREQK
         W GF L ++L  +K  +K W ++++++QK
Subjt:  GWMGFTLTNKLWNIKGQLKFWHSDYKREQK

XP_038904301.1 uncharacterized protein LOC120090656 [Benincasa hispida]2.9e-2433.05Show/hide
Query:  IWPELLSLIEYCTEACCLGEDINMTRPGGEWFPEGRITCSMRKFNKFI------EVPLLNGKFSVKRVQQSHSSPGFLIPFGHTRTPKVVTPEFWMQIGK
        +W EL SL E   +  C+GE+ N  R   E FP GR T  M  FNKFI      E PL NG+F+                              W + G 
Subjt:  IWPELLSLIEYCTEACCLGEDINMTRPGGEWFPEGRITCSMRKFNKFI------EVPLLNGKFSVKRVQQSHSSPGFLIPFGHTRTPKVVTPEFWMQIGK

Query:  TQTFQCQPYSSPDFLIVYLFPLPQPHPRSLLDKLLVYFDWDEAFANTKATQQVRTSSDHFSILLEAGAYKWGPLSPFIFCKNWLLDKYCCRMIENSLSLS
          +                        +SLLD  LV   W++ F N++  +Q RT SDHF + LEAGA++WGP S F FC +WL +K  C++IE SL   
Subjt:  TQTFQCQPYSSPDFLIVYLFPLPQPHPRSLLDKLLVYFDWDEAFANTKATQQVRTSSDHFSILLEAGAYKWGPLSPFIFCKNWLLDKYCCRMIENSLSLS

Query:  TPPGWMGFTLTNKLWNIKGQLKFWHSDYKREQK
            W   TL+  L   K  LK W  ++ +E K
Subjt:  TPPGWMGFTLTNKLWNIKGQLKFWHSDYKREQK

TrEMBL top hitse value%identityAlignment
A0A4Y1RS61 TatD related DNase1.1e-1629.06Show/hide
Query:  MYGPTDYRWRKLIWPELLSLIEYCTEACCLGEDINMTRPGGEWFPEGRITCSMRKFNKFIEVPLLNGKFSVKRVQQSHSSPGFLIPFGHTRTPKVVTPEF
        +YGP   R R   W EL  L  YC +  CLG D N+ R   E   EGR+T SMR FN FI+   L                         R P ++   F
Subjt:  MYGPTDYRWRKLIWPELLSLIEYCTEACCLGEDINMTRPGGEWFPEGRITCSMRKFNKFIEVPLLNGKFSVKRVQQSHSSPGFLIPFGHTRTPKVVTPEF

Query:  -WMQIGKTQTFQCQPYSSPDFLIVYLFPLPQPHPRSLLDKLLVYFDWDEAFANTKATQQVRTSSDHFSILLEAGAYKWGPLSPFIFCKNWLLDKYCCRMI
         W  + +     C+                       LD+ LV   W++ F + +     R +SDH  I L+    KWGP SPF F   WL      R I
Subjt:  -WMQIGKTQTFQCQPYSSPDFLIVYLFPLPQPHPRSLLDKLLVYFDWDEAFANTKATQQVRTSSDHFSILLEAGAYKWGPLSPFIFCKNWLLDKYCCRMI

Query:  ENSLSLSTPPGWMGFTLTNKLWNIKGQLKFWHSD
        +        PGW G+   ++L  +K +LK W  +
Subjt:  ENSLSLSTPPGWMGFTLTNKLWNIKGQLKFWHSD

A0A5A7UNL3 GTP-binding protein1.9e-1841.94Show/hide
Query:  RSLLDKLLVYFDWDEAFANTKATQQVRTSSDHFSILLEAGAYKWGPLSPFIFCKNWLLDKYCCRMIENSLSLSTPPGWMGFTLTNKLWNIKGQLKFWHSD
        RSLLD+  +   WD+ F N++ +++ R  SDHF +LLEAGA  WGP S F FC +WLL K C   IE +L  S   GW GF L  +L  +K  +K WH+ 
Subjt:  RSLLDKLLVYFDWDEAFANTKATQQVRTSSDHFSILLEAGAYKWGPLSPFIFCKNWLLDKYCCRMIENSLSLSTPPGWMGFTLTNKLWNIKGQLKFWHSD

Query:  YKRE------------QKSPLGWM
        +K +            QKS L W+
Subjt:  YKRE------------QKSPLGWM

A0A5A7UR38 Transposon TX1 uncharacterized3.6e-2552.78Show/hide
Query:  RSLLDKLLVYFDWDEAFANTKATQQVRTSSDHFSILLEAGAYKWGPLSPFIFCKNWLLDKYCCRMIENSLSLSTPPGWMGFTLTNKLWNIKGQLKFWHSD
        RSLLD+ LV  DWDE+FA+T+A+++ R +SDH  ILLEAGA++WGP SPF FC +WLLDK C ++I NSL+      W+GF + +KL ++K  LK WH +
Subjt:  RSLLDKLLVYFDWDEAFANTKATQQVRTSSDHFSILLEAGAYKWGPLSPFIFCKNWLLDKYCCRMIENSLSLSTPPGWMGFTLTNKLWNIKGQLKFWHSD

Query:  YKREQKSP
         +R +K P
Subjt:  YKREQKSP

A0A5D3BHE3 Uncharacterized protein2.9e-2232.43Show/hide
Query:  MYGPTDYRWRKLIWPELLSLIEYCTEACCLGEDINMTRPGGEWFPEGRITCSMRKFNKFI------EVPLLNGKFSVKRVQQSHSSPGFLIPFGHTRTPK
        +YGP DY  R+ +W  L+SL  YCT A C+G   N+TR   E FP  + T  MR+FN  I      E+PL NG+ +  R   S S               
Subjt:  MYGPTDYRWRKLIWPELLSLIEYCTEACCLGEDINMTRPGGEWFPEGRITCSMRKFNKFI------EVPLLNGKFSVKRVQQSHSSPGFLIPFGHTRTPK

Query:  VVTPEFWMQIGKTQTFQCQPYSSPDFLIVYLFPLPQPHPRSLLDKLLVYFDWDEAFANTKATQQVRTSSDHFSILLEAGAYKWGPLSPFIFCKNWLLDKY
                                               RSLLD   +  +WDE   N++  ++  T SDHF +LLEAG+ KWGP SPF F  +WL    
Subjt:  VVTPEFWMQIGKTQTFQCQPYSSPDFLIVYLFPLPQPHPRSLLDKLLVYFDWDEAFANTKATQQVRTSSDHFSILLEAGAYKWGPLSPFIFCKNWLLDKY

Query:  CCRMIENSLSLSTPPGWMGFTL
        C R+I+   ++++   W GF L
Subjt:  CCRMIENSLSLSTPPGWMGFTL

A0A5E4F090 Reverse transcriptase domain-containing protein (Fragment)1.1e-1629.06Show/hide
Query:  MYGPTDYRWRKLIWPELLSLIEYCTEACCLGEDINMTRPGGEWFPEGRITCSMRKFNKFIEVPLLNGKFSVKRVQQSHSSPGFLIPFGHTRTPKVVTPEF
        +YGP   R R   W EL  L  YC +  CLG D N+ R   E   EGR+T SMR FN FI+   L                         R P ++   F
Subjt:  MYGPTDYRWRKLIWPELLSLIEYCTEACCLGEDINMTRPGGEWFPEGRITCSMRKFNKFIEVPLLNGKFSVKRVQQSHSSPGFLIPFGHTRTPKVVTPEF

Query:  -WMQIGKTQTFQCQPYSSPDFLIVYLFPLPQPHPRSLLDKLLVYFDWDEAFANTKATQQVRTSSDHFSILLEAGAYKWGPLSPFIFCKNWLLDKYCCRMI
         W  + +     C+                       LD+ LV   W++ F + +     R +SDH  I L+    KWGP SPF F   WL      R I
Subjt:  -WMQIGKTQTFQCQPYSSPDFLIVYLFPLPQPHPRSLLDKLLVYFDWDEAFANTKATQQVRTSSDHFSILLEAGAYKWGPLSPFIFCKNWLLDKYCCRMI

Query:  ENSLSLSTPPGWMGFTLTNKLWNIKGQLKFWHSD
        +        PGW G+   ++L  +K +LK W  +
Subjt:  ENSLSLSTPPGWMGFTLTNKLWNIKGQLKFWHSD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATGGACCAACAGATTACAGATGGAGGAAACTCATATGGCCGGAGCTACTTTCCCTCATTGAGTATTGTACAGAAGCTTGCTGTTTGGGAGAGGATATTAATATGAC
CAGACCAGGTGGAGAGTGGTTTCCAGAAGGAAGAATAACGTGCAGCATGAGAAAATTCAATAAATTCATTGAAGTTCCTTTACTGAACGGGAAGTTTTCTGTCAAGAGAG
TACAACAGTCACATTCCAGCCCAGGTTTTCTCATACCTTTTGGCCATACCAGAACTCCAAAAGTTGTAACCCCTGAATTTTGGATGCAAATAGGGAAGACTCAGACGTTT
CAATGTCAGCCATATTCCAGCCCAGATTTTCTCATAGTCTACCTTTTTCCTCTTCCCCAGCCACATCCGAGATCATTGTTGGACAAACTTTTAGTTTATTTTGACTGGGA
TGAGGCTTTTGCGAACACAAAAGCAACCCAGCAAGTAAGGACCTCCTCAGACCACTTCTCCATTTTACTAGAAGCTGGCGCATACAAATGGGGGCCCCTTTCCCCTTTCA
TATTTTGTAAAAATTGGTTGTTAGACAAGTACTGCTGCCGAATGATTGAAAATTCTTTATCCTTGAGCACTCCACCAGGCTGGATGGGCTTCACATTAACAAATAAACTC
TGGAACATCAAGGGTCAGCTCAAATTTTGGCACTCAGATTACAAAAGGGAACAGAAAAGTCCGTTGGGCTGGATGGGCTTCGCGTTATCAAATAAACTTCAGAACATCAA
GGGTCAGCTCAAATCTTGGCACTCATATTACAAAAGGGAACAGAAAAGTCATGAAGAAACTGTCACGCCCTGCCCCAAATGTCACTCCATGAGACAAGATGAGGGCGTGC
CGCCTAGACATTCATTGCGTATGTCTCCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTATGGACCAACAGATTACAGATGGAGGAAACTCATATGGCCGGAGCTACTTTCCCTCATTGAGTATTGTACAGAAGCTTGCTGTTTGGGAGAGGATATTAATATGAC
CAGACCAGGTGGAGAGTGGTTTCCAGAAGGAAGAATAACGTGCAGCATGAGAAAATTCAATAAATTCATTGAAGTTCCTTTACTGAACGGGAAGTTTTCTGTCAAGAGAG
TACAACAGTCACATTCCAGCCCAGGTTTTCTCATACCTTTTGGCCATACCAGAACTCCAAAAGTTGTAACCCCTGAATTTTGGATGCAAATAGGGAAGACTCAGACGTTT
CAATGTCAGCCATATTCCAGCCCAGATTTTCTCATAGTCTACCTTTTTCCTCTTCCCCAGCCACATCCGAGATCATTGTTGGACAAACTTTTAGTTTATTTTGACTGGGA
TGAGGCTTTTGCGAACACAAAAGCAACCCAGCAAGTAAGGACCTCCTCAGACCACTTCTCCATTTTACTAGAAGCTGGCGCATACAAATGGGGGCCCCTTTCCCCTTTCA
TATTTTGTAAAAATTGGTTGTTAGACAAGTACTGCTGCCGAATGATTGAAAATTCTTTATCCTTGAGCACTCCACCAGGCTGGATGGGCTTCACATTAACAAATAAACTC
TGGAACATCAAGGGTCAGCTCAAATTTTGGCACTCAGATTACAAAAGGGAACAGAAAAGTCCGTTGGGCTGGATGGGCTTCGCGTTATCAAATAAACTTCAGAACATCAA
GGGTCAGCTCAAATCTTGGCACTCATATTACAAAAGGGAACAGAAAAGTCATGAAGAAACTGTCACGCCCTGCCCCAAATGTCACTCCATGAGACAAGATGAGGGCGTGC
CGCCTAGACATTCATTGCGTATGTCTCCGTGA
Protein sequenceShow/hide protein sequence
MYGPTDYRWRKLIWPELLSLIEYCTEACCLGEDINMTRPGGEWFPEGRITCSMRKFNKFIEVPLLNGKFSVKRVQQSHSSPGFLIPFGHTRTPKVVTPEFWMQIGKTQTF
QCQPYSSPDFLIVYLFPLPQPHPRSLLDKLLVYFDWDEAFANTKATQQVRTSSDHFSILLEAGAYKWGPLSPFIFCKNWLLDKYCCRMIENSLSLSTPPGWMGFTLTNKL
WNIKGQLKFWHSDYKREQKSPLGWMGFALSNKLQNIKGQLKSWHSYYKREQKSHEETVTPCPKCHSMRQDEGVPPRHSLRMSP