CuGenDBv2

Gene ID	MELO3C032702
Organism	Cucumis melo DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Genome location	chr07:12652699..12654016
RNA-Seq Expression	MELO3C032702
Synteny	MELO3C032702
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]

1.5e-68

78.01

Show/hide

Query:  MDEHELASIVNACIASQCQLLLMLELLKNNTKRITH---ETRHRIRQLAYFRMIHSSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTKVVDVEEMVAKF
        MDEHELASIVNA IASQ QLLLMLELLKN+TKRITH   ETRHRIRQLAYFRMIH SDLVCRQSTRMDRRCFAILCHLLRTIAGLTST+VVDVEEMVA F
Subjt:  MDEHELASIVNACIASQCQLLLMLELLKNNTKRITH---ETRHRIRQLAYFRMIHSSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTKVVDVEEMVAKF

Query:  LHILAYDVKNRVIQREFMGSGETISHYFNMVLLA----------------------------NCLGALDGTYIKVNVPVSDRARYRTRKGE
        LHILA+DVKNRVIQREFM SGETIS +FNMVLLA                            NCLGALDGTYIKVNVP SDRARYRTRKGE
Subjt:  LHILAYDVKNRVIQREFMGSGETISHYFNMVLLA----------------------------NCLGALDGTYIKVNVPVSDRARYRTRKGE

KAA0035620.1 retrotransposon protein [Cucumis melo var. makuwa]

1.5e-68

78.01

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Query:  MDEHELASIVNACIASQCQLLLMLELLKNNTKRITH---ETRHRIRQLAYFRMIHSSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTKVVDVEEMVAKF
        MDEHELASIVNA IASQ QLLLMLELLKN+TKRITH   ETRHRIRQLAYFRMIH SDLVCRQSTRMDRRCFAILCHLLRTIAGLTST+VVDVEEMVA F
Subjt:  MDEHELASIVNACIASQCQLLLMLELLKNNTKRITH---ETRHRIRQLAYFRMIHSSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTKVVDVEEMVAKF

Query:  LHILAYDVKNRVIQREFMGSGETISHYFNMVLLA----------------------------NCLGALDGTYIKVNVPVSDRARYRTRKGE
        LHILA+DVKNRVIQREFM SGETIS +FNMVLLA                            NCLGALDGTYIKVNVP SDRARYRTRKGE
Subjt:  LHILAYDVKNRVIQREFMGSGETISHYFNMVLLA----------------------------NCLGALDGTYIKVNVPVSDRARYRTRKGE

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]

1.5e-68

78.01

Show/hide

Query:  MDEHELASIVNACIASQCQLLLMLELLKNNTKRITH---ETRHRIRQLAYFRMIHSSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTKVVDVEEMVAKF
        MDEHELASIVNA IASQ QLLLMLELLKN+TKRITH   ETRHRIRQLAYFRMIH SDLVCRQSTRMDRRCFAILCHLLRTIAGLTST+VVDVEEMVA F
Subjt:  MDEHELASIVNACIASQCQLLLMLELLKNNTKRITH---ETRHRIRQLAYFRMIHSSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTKVVDVEEMVAKF

Query:  LHILAYDVKNRVIQREFMGSGETISHYFNMVLLA----------------------------NCLGALDGTYIKVNVPVSDRARYRTRKGE
        LHILA+DVKNRVIQREFM SGETIS +FNMVLLA                            NCLGALDGTYIKVNVP SDRARYRTRKGE
Subjt:  LHILAYDVKNRVIQREFMGSGETISHYFNMVLLA----------------------------NCLGALDGTYIKVNVPVSDRARYRTRKGE

KAA0048361.1 retrotransposon protein [Cucumis melo var. makuwa]

1.5e-68

78.01

Show/hide

Query:  MDEHELASIVNACIASQCQLLLMLELLKNNTKRITH---ETRHRIRQLAYFRMIHSSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTKVVDVEEMVAKF
        MDEHELASIVNA IASQ QLLLMLELLKN+TKRITH   ETRHRIRQLAYFRMIH SDLVCRQSTRMDRRCFAILCHLLRTIAGLTST+VVDVEEMVA F
Subjt:  MDEHELASIVNACIASQCQLLLMLELLKNNTKRITH---ETRHRIRQLAYFRMIHSSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTKVVDVEEMVAKF

Query:  LHILAYDVKNRVIQREFMGSGETISHYFNMVLLA----------------------------NCLGALDGTYIKVNVPVSDRARYRTRKGE
        LHILA+DVKNRVIQREFM SGETIS +FNMVLLA                            NCLGALDGTYIKVNVP SDRARYRTRKGE
Subjt:  LHILAYDVKNRVIQREFMGSGETISHYFNMVLLA----------------------------NCLGALDGTYIKVNVPVSDRARYRTRKGE

KAA0065286.1 retrotransposon protein [Cucumis melo var. makuwa]

1.5e-68

78.01

Show/hide

Query:  MDEHELASIVNACIASQCQLLLMLELLKNNTKRITH---ETRHRIRQLAYFRMIHSSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTKVVDVEEMVAKF
        MDEHELASIVNA IASQ QLLLMLELLKN+TKRITH   ETRHRIRQLAYFRMIH SDLVCRQSTRMDRRCFAILCHLLRTIAGLTST+VVDVEEMVA F
Subjt:  MDEHELASIVNACIASQCQLLLMLELLKNNTKRITH---ETRHRIRQLAYFRMIHSSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTKVVDVEEMVAKF

Query:  LHILAYDVKNRVIQREFMGSGETISHYFNMVLLA----------------------------NCLGALDGTYIKVNVPVSDRARYRTRKGE
        LHILA+DVKNRVIQREFM SGETIS +FNMVLLA                            NCLGALDGTYIKVNVP SDRARYRTRKGE
Subjt:  LHILAYDVKNRVIQREFMGSGETISHYFNMVLLA----------------------------NCLGALDGTYIKVNVPVSDRARYRTRKGE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SWD8 Retrotransposon protein

7.1e-69

78.01

Show/hide

Query:  MDEHELASIVNACIASQCQLLLMLELLKNNTKRITH---ETRHRIRQLAYFRMIHSSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTKVVDVEEMVAKF
        MDEHELASIVNA IASQ QLLLMLELLKN+TKRITH   ETRHRIRQLAYFRMIH SDLVCRQSTRMDRRCFAILCHLLRTIAGLTST+VVDVEEMVA F
Subjt:  MDEHELASIVNACIASQCQLLLMLELLKNNTKRITH---ETRHRIRQLAYFRMIHSSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTKVVDVEEMVAKF

Query:  LHILAYDVKNRVIQREFMGSGETISHYFNMVLLA----------------------------NCLGALDGTYIKVNVPVSDRARYRTRKGE
        LHILA+DVKNRVIQREFM SGETIS +FNMVLLA                            NCLGALDGTYIKVNVP SDRARYRTRKGE
Subjt:  LHILAYDVKNRVIQREFMGSGETISHYFNMVLLA----------------------------NCLGALDGTYIKVNVPVSDRARYRTRKGE

A0A5A7TXW1 Retrotransposon protein

7.1e-69

78.01

Show/hide

Query:  MDEHELASIVNACIASQCQLLLMLELLKNNTKRITH---ETRHRIRQLAYFRMIHSSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTKVVDVEEMVAKF
        MDEHELASIVNA IASQ QLLLMLELLKN+TKRITH   ETRHRIRQLAYFRMIH SDLVCRQSTRMDRRCFAILCHLLRTIAGLTST+VVDVEEMVA F
Subjt:  MDEHELASIVNACIASQCQLLLMLELLKNNTKRITH---ETRHRIRQLAYFRMIHSSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTKVVDVEEMVAKF

Query:  LHILAYDVKNRVIQREFMGSGETISHYFNMVLLA----------------------------NCLGALDGTYIKVNVPVSDRARYRTRKGE
        LHILA+DVKNRVIQREFM SGETIS +FNMVLLA                            NCLGALDGTYIKVNVP SDRARYRTRKGE
Subjt:  LHILAYDVKNRVIQREFMGSGETISHYFNMVLLA----------------------------NCLGALDGTYIKVNVPVSDRARYRTRKGE

A0A5A7U476 Retrotransposon protein

7.1e-69

78.01

Show/hide

Query:  MDEHELASIVNACIASQCQLLLMLELLKNNTKRITH---ETRHRIRQLAYFRMIHSSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTKVVDVEEMVAKF
        MDEHELASIVNA IASQ QLLLMLELLKN+TKRITH   ETRHRIRQLAYFRMIH SDLVCRQSTRMDRRCFAILCHLLRTIAGLTST+VVDVEEMVA F
Subjt:  MDEHELASIVNACIASQCQLLLMLELLKNNTKRITH---ETRHRIRQLAYFRMIHSSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTKVVDVEEMVAKF

Query:  LHILAYDVKNRVIQREFMGSGETISHYFNMVLLA----------------------------NCLGALDGTYIKVNVPVSDRARYRTRKGE
        LHILA+DVKNRVIQREFM SGETIS +FNMVLLA                            NCLGALDGTYIKVNVP SDRARYRTRKGE
Subjt:  LHILAYDVKNRVIQREFMGSGETISHYFNMVLLA----------------------------NCLGALDGTYIKVNVPVSDRARYRTRKGE

A0A5A7VG29 Retrotransposon protein

7.1e-69

78.01

Show/hide

Query:  MDEHELASIVNACIASQCQLLLMLELLKNNTKRITH---ETRHRIRQLAYFRMIHSSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTKVVDVEEMVAKF
        MDEHELASIVNA IASQ QLLLMLELLKN+TKRITH   ETRHRIRQLAYFRMIH SDLVCRQSTRMDRRCFAILCHLLRTIAGLTST+VVDVEEMVA F
Subjt:  MDEHELASIVNACIASQCQLLLMLELLKNNTKRITH---ETRHRIRQLAYFRMIHSSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTKVVDVEEMVAKF

Query:  LHILAYDVKNRVIQREFMGSGETISHYFNMVLLA----------------------------NCLGALDGTYIKVNVPVSDRARYRTRKGE
        LHILA+DVKNRVIQREFM SGETIS +FNMVLLA                            NCLGALDGTYIKVNVP SDRARYRTRKGE
Subjt:  LHILAYDVKNRVIQREFMGSGETISHYFNMVLLA----------------------------NCLGALDGTYIKVNVPVSDRARYRTRKGE

A0A5D3BDX0 Retrotransposon protein

7.1e-69

78.01

Show/hide

Query:  MDEHELASIVNACIASQCQLLLMLELLKNNTKRITH---ETRHRIRQLAYFRMIHSSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTKVVDVEEMVAKF
        MDEHELASIVNA IASQ QLLLMLELLKN+TKRITH   ETRHRIRQLAYFRMIH SDLVCRQSTRMDRRCFAILCHLLRTIAGLTST+VVDVEEMVA F
Subjt:  MDEHELASIVNACIASQCQLLLMLELLKNNTKRITH---ETRHRIRQLAYFRMIHSSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTKVVDVEEMVAKF

Query:  LHILAYDVKNRVIQREFMGSGETISHYFNMVLLA----------------------------NCLGALDGTYIKVNVPVSDRARYRTRKGE
        LHILA+DVKNRVIQREFM SGETIS +FNMVLLA                            NCLGALDGTYIKVNVP SDRARYRTRKGE
Subjt:  LHILAYDVKNRVIQREFMGSGETISHYFNMVLLA----------------------------NCLGALDGTYIKVNVPVSDRARYRTRKGE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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mRNA sequence

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ATGGATGAACACGAGTTGGCGTCTATTGTAAATGCGTGTATAGCATCCCAATGTCAGTTGTTACTAATGTTAGAGCTCTTGAAGAACAACACGAAGAGGATAACG
CATGAAACTAGGCATAGGATTAGACAATTAGCTTATTTTCGCATGATTCATAGCTCAGACCTTGTGTGTCGTCAAAGTACGAGAATGGATCGAAGATGTTTCGCC
ATTCTATGTCACCTACTGAGGACCATTGCTGGACTAACGTCAACGAAAGTTGTCGATGTTGAGGAGATGGTAGCAAAGTTCCTCCACATTCTTGCATACGACGTG
AAAAATCGTGTCATTCAACGAGAGTTTATGGGGTCAGGTGAGACAATTTCCCATTATTTCAACATGGTCTTGTTGGCCAATTGCCTAGGTGCATTAGATGGAACG
TACATAAAAGTCAACGTTCCAGTAAGTGACCGAGCTAGGTATAGAACACGCAAGGGGGAGTGGCCACAAATGTACTTGGCGCGTGTGACACGAAAGGAGATTTCT
TTTACGTACTTGCCAGTTGGGAAGGATCAACTGCAGACTCACGCATCCTACGCTATTACTACCTGGTTGATGTCGGGTACCCAAATGCATAGGGTTTCCTGGCAC
CATACAGAGGCCAACACTACCACTTGCAAGAATGGCGTGGTGCTAAAAATGCACCTTCAACGTAGAAAGAGTTCTTAAATATGAAGCATTTGTCTGCTCGTAATG
TAATCGAAAGACCATTCAGTGTCTTGAAGGGTCGATGGGCGATACTACAGGGAAATTCATACTACCCTGTAGAAGTTCAATGTCGCACAATACTCGCATGTTGTC
TCCTCCACAACCTTATCAATAGAGAGATGACAAACTTTGATATAGAAGACAACATAGATGAGGTTGATTCCACCCACGCGACTACTACCGCTGATGACATACATT
ACATAGAGACGTCCAATGAGTGGAGTCAATGGAGGGACGACCTTGCAGAAGAAATGTTTTCTGATTGGGAGTTACGTAACCAGTAG

Protein sequence

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MDEHELASIVNACIASQCQLLLMLELLKNNTKRITHETRHRIRQLAYFRMIHSSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTKVVDVEEMVAKFLHILAYDV
KNRVIQREFMGSGETISHYFNMVLLANCLGALDGTYIKVNVPVSDRARYRTRKGEWPQMYLARVTRKEISFTYLPVGKDQLQTHASYAITTWLMSGTQMHRVSWH
HTEANTTTCKNGVVLKMHLQRRKSS

MELO3C032702 (gene) of Melon (DHL92) v4 genome