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MELO3C032776 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C032776
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionTransportin-3 isoform X2
Genome locationchr07:18488077..18488664
RNA-Seq ExpressionMELO3C032776
SyntenyMELO3C032776
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYJ97217.1 putative RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Cucumis melo var. makuwa]4.7e-0463.46Show/hide
Query:  SFAFIYTADSVPTEIPSEKTPSPNSSSVALSSSSLFPSTKYGSKVKSKKHPK
        +FAFI  A S+PT IPS K P+ NSSS  LSSSSL  S K GSK KSKKH +
Subjt:  SFAFIYTADSVPTEIPSEKTPSPNSSSVALSSSSLFPSTKYGSKVKSKKHPK
TYK28320.1 transportin-3 isoform X2 [Cucumis melo var. makuwa]2.1e-1253.27Show/hide
Query:  PIRIPSISTN----GRQVLAKSLPSSSSKSFAFIYTADSVPTEIPSEKTPSPNSSSVALSSSSLFPSTKYGSKVKSKKHPKSRILPHPFKTFPKHFVRRK
        P+ + S S N    G+QV     P    +SF  +      P  +P  K  S NSSSVALSSSSL    K  SK KS+KHPKSR LPHP KTFPKHFVRRK
Subjt:  PIRIPSISTN----GRQVLAKSLPSSSSKSFAFIYTADSVPTEIPSEKTPSPNSSSVALSSSSLFPSTKYGSKVKSKKHPKSRILPHPFKTFPKHFVRRK

Query:  RVKEALE
        RVKE L+
Subjt:  RVKEALE
TrEMBL top hitse value%identityAlignment
A0A5D3BDL5 Putative RNA polymerase II transcription factor B subunit 1-1 isoform X12.3e-0463.46Show/hide
Query:  SFAFIYTADSVPTEIPSEKTPSPNSSSVALSSSSLFPSTKYGSKVKSKKHPK
        +FAFI  A S+PT IPS K P+ NSSS  LSSSSL  S K GSK KSKKH +
Subjt:  SFAFIYTADSVPTEIPSEKTPSPNSSSVALSSSSLFPSTKYGSKVKSKKHPK
A0A5D3DYJ4 Transportin-3 isoform X21.0e-1253.27Show/hide
Query:  PIRIPSISTN----GRQVLAKSLPSSSSKSFAFIYTADSVPTEIPSEKTPSPNSSSVALSSSSLFPSTKYGSKVKSKKHPKSRILPHPFKTFPKHFVRRK
        P+ + S S N    G+QV     P    +SF  +      P  +P  K  S NSSSVALSSSSL    K  SK KS+KHPKSR LPHP KTFPKHFVRRK
Subjt:  PIRIPSISTN----GRQVLAKSLPSSSSKSFAFIYTADSVPTEIPSEKTPSPNSSSVALSSSSLFPSTKYGSKVKSKKHPKSRILPHPFKTFPKHFVRRK

Query:  RVKEALE
        RVKE L+
Subjt:  RVKEALE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTGTCGGAAGAGAGAGGCTAGAACAGCGCATGGAGTTGTTGAAAGTAGTCCAAGATCCTCTTGGCGCGAAAAGCCTCTCTCAAAATTTTCCAGTAGTAAGC
CCCCAGAAGGAAGTCCAAAAGACATGGGCCATTAAAGAGCCGATTTTAAAGTGGAGAGAGAAGAAGAAAAAGGTCCCTAAAAGAGAAAGGAAAAATGCAGGGGAA
GTTGAAGTGCAACCCTTGGAGAGAAAAGAGAATTTTTCAACTGAACATACTTCATTGCCAATTAGAATTCCAAGTATCAGCACAAATGGAAGGCAAGTCCTTGCT
AAGTCACTTCCCTCATCCTCGTCAAAGTCTTTTGCTTTCATCTACACTGCAGATTCTGTGCCCACTGAAATCCCCTCTGAAAAAACTCCATCTCCCAACTCTTCC
TCTGTTGCTCTTTCTTCTTCTTCCCTCTTTCCCTCGACCAAATATGGGTCGAAGGTTAAGTCTAAAAAACATCCAAAATCAAGGATTCTCCCACATCCCTTCAAG
ACTTTTCCAAAGCATTTTGTTAGAAGAAAAAGGGTTAAAGAGGCCTTAGAAAAAGTTCGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTGTCGGAAGAGAGAGGCTAGAACAGCGCATGGAGTTGTTGAAAGTAGTCCAAGATCCTCTTGGCGCGAAAAGCCTCTCTCAAAATTTTCCAGTAGTAAGC
CCCCAGAAGGAAGTCCAAAAGACATGGGCCATTAAAGAGCCGATTTTAAAGTGGAGAGAGAAGAAGAAAAAGGTCCCTAAAAGAGAAAGGAAAAATGCAGGGGAA
GTTGAAGTGCAACCCTTGGAGAGAAAAGAGAATTTTTCAACTGAACATACTTCATTGCCAATTAGAATTCCAAGTATCAGCACAAATGGAAGGCAAGTCCTTGCT
AAGTCACTTCCCTCATCCTCGTCAAAGTCTTTTGCTTTCATCTACACTGCAGATTCTGTGCCCACTGAAATCCCCTCTGAAAAAACTCCATCTCCCAACTCTTCC
TCTGTTGCTCTTTCTTCTTCTTCCCTCTTTCCCTCGACCAAATATGGGTCGAAGGTTAAGTCTAAAAAACATCCAAAATCAAGGATTCTCCCACATCCCTTCAAG
ACTTTTCCAAAGCATTTTGTTAGAAGAAAAAGGGTTAAAGAGGCCTTAGAAAAAGTTCGCTAA
Protein sequenceShow/hide protein sequence
MLVGRERLEQRMELLKVVQDPLGAKSLSQNFPVVSPQKEVQKTWAIKEPILKWREKKKKVPKRERKNAGEVEVQPLERKENFSTEHTSLPIRIPSISTNGRQVLA
KSLPSSSSKSFAFIYTADSVPTEIPSEKTPSPNSSSVALSSSSLFPSTKYGSKVKSKKHPKSRILPHPFKTFPKHFVRRKRVKEALEKVR