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MELO3C032979 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C032979
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr03:6344616..6345917
RNA-Seq ExpressionMELO3C032979
SyntenyMELO3C032979
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043157.1 retrotransposon protein [Cucumis melo var. makuwa]3.4e-52100Show/hide
Query:  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSN
        MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSN
Subjt:  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSN

Query:  CNDQRWK
        CNDQRWK
Subjt:  CNDQRWK
KAA0045009.1 retrotransposon protein [Cucumis melo var. makuwa]3.4e-52100Show/hide
Query:  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSN
        MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSN
Subjt:  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSN

Query:  CNDQRWK
        CNDQRWK
Subjt:  CNDQRWK
KAA0056561.1 retrotransposon protein [Cucumis melo var. makuwa]3.4e-52100Show/hide
Query:  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSN
        MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSN
Subjt:  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSN

Query:  CNDQRWK
        CNDQRWK
Subjt:  CNDQRWK
KAA0058874.1 retrotransposon protein [Cucumis melo var. makuwa]3.4e-52100Show/hide
Query:  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSN
        MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSN
Subjt:  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSN

Query:  CNDQRWK
        CNDQRWK
Subjt:  CNDQRWK
TYK27061.1 retrotransposon protein [Cucumis melo var. makuwa]3.4e-52100Show/hide
Query:  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSN
        MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSN
Subjt:  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSN

Query:  CNDQRWK
        CNDQRWK
Subjt:  CNDQRWK
TrEMBL top hitse value%identityAlignment
A0A5A7TMY2 Retrotransposon protein1.6e-52100Show/hide
Query:  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSN
        MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSN
Subjt:  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSN

Query:  CNDQRWK
        CNDQRWK
Subjt:  CNDQRWK
A0A5A7UMZ4 Retrotransposon protein1.6e-52100Show/hide
Query:  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSN
        MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSN
Subjt:  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSN

Query:  CNDQRWK
        CNDQRWK
Subjt:  CNDQRWK
A0A5A7UUT3 Retrotransposon protein1.6e-52100Show/hide
Query:  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSN
        MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSN
Subjt:  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSN

Query:  CNDQRWK
        CNDQRWK
Subjt:  CNDQRWK
A0A5D3D7X8 Retrotransposon protein1.6e-52100Show/hide
Query:  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSN
        MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSN
Subjt:  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSN

Query:  CNDQRWK
        CNDQRWK
Subjt:  CNDQRWK
A0A5D3DTQ4 Retrotransposon protein1.6e-52100Show/hide
Query:  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSN
        MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSN
Subjt:  MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSN

Query:  CNDQRWK
        CNDQRWK
Subjt:  CNDQRWK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G28730.1 unknown protein2.1e-0734.07Show/hide
Query:  IHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIK
        I+ +++ C+   RM    F  LC +L    GL S+  + ++E VA+FL + A +   R I   F  + ET+ R F+ VL A+ RL  E I+
Subjt:  IHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIK
AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)1.4e-1138.1Show/hide
Query:  CRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIK
        C ++ RMD+  F  LC LL+    L  T  + +E  +A+FL ++ H+++ R +Q  F  SGET+SRHFN VL AV+ + ++  +
Subjt:  CRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
atgatacacgagtcagatcttgtgtgtcgacaaagcacgcggatggataggcgaacattcgcaattctatgtcatttacttagaaatgtggctggtctttcttcaactga
aattgtcgatgttgaggaaatggtagcaatgttcttgcacgtcctcgctcatgacgtgaagaaccgcgtcatacaacgagaatttgtacgctccggtgagacagtatctc
gacatttcaacatcgtattgttggctgttcttcgactgtacgaggagttgataaagagacctgttccggtaacaagtaactgcaatgatcaacgttggaagaaatga
mRNA sequenceShow/hide mRNA sequence
atggatgaacaaacacttattggagttctaactgcattcacgtcggctcaacgtcagattttactaacgttggagctattaatgaacaacaataagcgtctcccacatac
accgcccgatacacgccatagattaggagcttgcttactttcgcatgatacacgagtcagatcttgtgtgtcgacaaagcacgcggatggataggcgaacattcgcaatt
ctatgtcatttacttagaaatgtggctggtctttcttcaactgaaattgtcgatgttgaggaaatggtagcaatgttcttgcacgtcctcgctcatgacgtgaagaaccg
cgtcatacaacgagaatttgtacgctccggtgagacagtatctcgacatttcaacatcgtattgttggctgttcttcgactgtacgaggagttgataaagagacctgttc
cggtaacaagtaactgcaatgatcaacgttggaagaaatgacatattgcgacaacgttgaggacgagtacgagggggactccacgtacgcgacgaccaccgcttcagaga
cattcagtacattgagacacaaacgagtggtctcaatggcgcgacgacctagccgcatcgatgttcaccattgcagttgcgtaacgcttag
Protein sequenceShow/hide protein sequence
MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRSGETVSRHFNIVLLAVLRLYEELIKRPVPVTSNCNDQRWKK