; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C033016 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C033016
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr01:10464255..10465185
RNA-Seq ExpressionMELO3C033016
SyntenyMELO3C033016
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]4.2e-6476.74Show/hide
Query:  KSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVHMSLDEMFGTRTGQASGRRNCSSGSKRKRG
        +SH AAKG LHKSF YYDDL YVF  D ATGA  ETFAD GSN+ NMFNDGVPL DSH++DI T+YSQGVHMSLDE+FG R GQAS RRN SSGSKRKRG
Subjt:  KSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVHMSLDEMFGTRTGQASGRRNCSSGSKRKRG

Query:  SQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGIE
        S+HYE V+VI S  EF NDQLK I DW KEKRATEVEL  +VVKQLQDIP+LRSQDR KL+QILFRSVE IE
Subjt:  SQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGIE

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.1e-6477.98Show/hide
Query:  AAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVHMSLDEMFGTRTGQASGRRNCSSGSKRKRGSQHY
        A K  LHKSF YYDDLFYVF KD+AT A  ETFADVGSN+ NMFN  VPLDDSHD+DIP MYSQGVHMS DEMFG R GQAS R+NCSSGSKRK+GS+HY
Subjt:  AAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVHMSLDEMFGTRTGQASGRRNCSSGSKRKRGSQHY

Query:  ETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGIE
        ETV+VI+S +EF NDQLKAI +W KEKRATEVEL A+V+KQLQDIPEL+S+DR KLIQILFRSVE IE
Subjt:  ETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGIE

KAA0042340.1 retrotransposon protein [Cucumis melo var. makuwa]4.5e-6675.71Show/hide
Query:  FDSWVKSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVHMSLDEMFGTRTGQASGRRNCSSGS
        F  W++SH   KG L+KSF YYDD+ YVF KDQAT A  ETFADVGSN+ NMFNDGVPL DSH +DIPTMYSQGV MSLDEMFGTR GQAS RRNCSS S
Subjt:  FDSWVKSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVHMSLDEMFGTRTGQASGRRNCSSGS

Query:  KRKRGSQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGIE
        KRK+GSQHYETV+VIRS M+F NDQLKAI DW KEKRA +VEL A VVKQLQDIP+L+++DR K+IQILF SVEGIE
Subjt:  KRKRGSQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGIE

TYK07962.1 retrotransposon protein [Cucumis melo var. makuwa]3.8e-7374.63Show/hide
Query:  MRESSSSCFGWNEEFQCIVVKGELFDSWVKSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVH
        MRESSS CFGWNEEFQCIV KGE FDSW  SHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVH
Subjt:  MRESSSSCFGWNEEFQCIVVKGELFDSWVKSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVH

Query:  MSLDEMFGTRTGQASGRRNCSSGSKRKRGSQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGI
        MSLDEMFGTRT                                           DW KEK ATEVELHAKVVKQLQ IPELRSQDRTKLIQILFRSVEGI
Subjt:  MSLDEMFGTRTGQASGRRNCSSGSKRKRGSQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGI

Query:  E
        E
Subjt:  E

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]4.1e-8076.62Show/hide
Query:  MRESSSSCFGWNEEFQCIVVKGELFDSWVKSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVH
        MR  S S FGWNEEFQCI+ + +LFDSW+KSH AAKG LHKSF YYDDL YVF KD+ATGA  ETF +VGSN+ NMFND +PL DSHD+DIPTMYSQGVH
Subjt:  MRESSSSCFGWNEEFQCIVVKGELFDSWVKSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVH

Query:  MSLDEMFGTRTGQASGRRNCSSGSKRKRGSQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGI
        MS DEMFG R GQAS RRNCSS SKRKRGS+ YETV+VIRSVMEF N+QLKAI DW KEKRA EVE+ A+VVKQLQDIP+LRSQDR KL+QILFRS+E I
Subjt:  MSLDEMFGTRTGQASGRRNCSSGSKRKRGSQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGI

Query:  E
        E
Subjt:  E

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859532.0e-8076.62Show/hide
Query:  MRESSSSCFGWNEEFQCIVVKGELFDSWVKSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVH
        MR  S S FGWNEEFQCI+ + +LFDSW+KSH AAKG LHKSF YYDDL YVF KD+ATGA  ETF +VGSN+ NMFND +PL DSHD+DIPTMYSQGVH
Subjt:  MRESSSSCFGWNEEFQCIVVKGELFDSWVKSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVH

Query:  MSLDEMFGTRTGQASGRRNCSSGSKRKRGSQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGI
        MS DEMFG R GQAS RRNCSS SKRKRGS+ YETV+VIRSVMEF N+QLKAI DW KEKRA EVE+ A+VVKQLQDIP+LRSQDR KL+QILFRS+E I
Subjt:  MSLDEMFGTRTGQASGRRNCSSGSKRKRGSQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGI

Query:  E
        E
Subjt:  E

A0A5A7SQU2 Putative nuclease HARBI15.3e-6577.98Show/hide
Query:  AAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVHMSLDEMFGTRTGQASGRRNCSSGSKRKRGSQHY
        A K  LHKSF YYDDLFYVF KD+AT A  ETFADVGSN+ NMFN  VPLDDSHD+DIP MYSQGVHMS DEMFG R GQAS R+NCSSGSKRK+GS+HY
Subjt:  AAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVHMSLDEMFGTRTGQASGRRNCSSGSKRKRGSQHY

Query:  ETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGIE
        ETV+VI+S +EF NDQLKAI +W KEKRATEVEL A+V+KQLQDIPEL+S+DR KLIQILFRSVE IE
Subjt:  ETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGIE

A0A5A7U0H7 Retrotransposon protein2.0e-8076.62Show/hide
Query:  MRESSSSCFGWNEEFQCIVVKGELFDSWVKSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVH
        MR  S S FGWNEEFQCI+ + +LFDSW+KSH AAKG LHKSF YYDDL YVF KD+ATGA  ETF +VGSN+ NMFND +PL DSHD+DIPTMYSQGVH
Subjt:  MRESSSSCFGWNEEFQCIVVKGELFDSWVKSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVH

Query:  MSLDEMFGTRTGQASGRRNCSSGSKRKRGSQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGI
        MS DEMFG R GQAS RRNCSS SKRKRGS+ YETV+VIRSVMEF N+QLKAI DW KEKRA EVE+ A+VVKQLQDIP+LRSQDR KL+QILFRS+E I
Subjt:  MSLDEMFGTRTGQASGRRNCSSGSKRKRGSQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGI

Query:  E
        E
Subjt:  E

A0A5D3C9I2 Retrotransposon protein1.8e-7374.63Show/hide
Query:  MRESSSSCFGWNEEFQCIVVKGELFDSWVKSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVH
        MRESSS CFGWNEEFQCIV KGE FDSW  SHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVH
Subjt:  MRESSSSCFGWNEEFQCIVVKGELFDSWVKSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVH

Query:  MSLDEMFGTRTGQASGRRNCSSGSKRKRGSQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGI
        MSLDEMFGTRT                                           DW KEK ATEVELHAKVVKQLQ IPELRSQDRTKLIQILFRSVEGI
Subjt:  MSLDEMFGTRTGQASGRRNCSSGSKRKRGSQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGI

Query:  E
        E
Subjt:  E

A0A5D3CVB7 Retrotransposon protein2.2e-6675.71Show/hide
Query:  FDSWVKSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVHMSLDEMFGTRTGQASGRRNCSSGS
        F  W++SH   KG L+KSF YYDD+ YVF KDQAT A  ETFADVGSN+ NMFNDGVPL DSH +DIPTMYSQGV MSLDEMFGTR GQAS RRNCSS S
Subjt:  FDSWVKSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVHMSLDEMFGTRTGQASGRRNCSSGS

Query:  KRKRGSQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGIE
        KRK+GSQHYETV+VIRS M+F NDQLKAI DW KEKRA +VEL A VVKQLQDIP+L+++DR K+IQILF SVEGIE
Subjt:  KRKRGSQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGIE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGAGTCGTCGAGTAGTTGCTTTGGATGGAACGAAGAATTTCAATGCATCGTCGTAAAAGGAGAGTTGTTTGATAGTTGGGTAAAGAGCCATCGTGCAGCCAAAGG
CTTTCTACACAAATCATTTTCATATTATGATGATCTATTCTATGTCTTCGACAAAGATCAGGCAACGGGAGCATGTTTAGAGACCTTTGCTGATGTAGGATCTAATATGC
TAAACATGTTTAATGACGGTGTTCCCCTCGATGATTCACATGATAAAGACATCCCAACGATGTATAGCCAAGGAGTGCATATGTCACTAGATGAGATGTTTGGAACACGT
ACAGGTCAAGCAAGTGGGAGAAGAAATTGTTCAAGTGGAAGTAAAAGAAAACGAGGTAGCCAACATTATGAAACGGTAAAGGTGATTAGGAGTGTAATGGAATTTAGAAA
TGATCAATTAAAAGCAATTGTAGATTGGTCAAAAGAGAAGCGTGCAACGGAGGTCGAATTGCATGCTAAAGTCGTGAAACAGCTGCAAGATATCCCTGAACTACGAAGCC
AAGATAGGACAAAGCTTATTCAAATCTTATTCCGTAGTGTGGAGGGCATTGAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAAGTTTTTCACGAGCACAAAACACACATGGACTAAAGAGGAAGAAGCAAAACTAGTTGAGTGCTTGGTCAAATTTGTTTCAGCTGGTGGATGGAGGTCGGATAGT
AGGACATTTCGACCTGGGTACCTGGCCCAATTACAACGGATGATGGTAGAGAAGTTGCCCGACACTAATATCCAAGGATCGTCCATGATAGATTGTCATGTGAAATCTGT
TAAAAAACCTACCAAGCAATTGCAGAAATGAGGGAGTCGTCGAGTAGTTGCTTTGGATGGAACGAAGAATTTCAATGCATCGTCGTAAAAGGAGAGTTGTTTGATAGTTG
GGTAAAGAGCCATCGTGCAGCCAAAGGCTTTCTACACAAATCATTTTCATATTATGATGATCTATTCTATGTCTTCGACAAAGATCAGGCAACGGGAGCATGTTTAGAGA
CCTTTGCTGATGTAGGATCTAATATGCTAAACATGTTTAATGACGGTGTTCCCCTCGATGATTCACATGATAAAGACATCCCAACGATGTATAGCCAAGGAGTGCATATG
TCACTAGATGAGATGTTTGGAACACGTACAGGTCAAGCAAGTGGGAGAAGAAATTGTTCAAGTGGAAGTAAAAGAAAACGAGGTAGCCAACATTATGAAACGGTAAAGGT
GATTAGGAGTGTAATGGAATTTAGAAATGATCAATTAAAAGCAATTGTAGATTGGTCAAAAGAGAAGCGTGCAACGGAGGTCGAATTGCATGCTAAAGTCGTGAAACAGC
TGCAAGATATCCCTGAACTACGAAGCCAAGATAGGACAAAGCTTATTCAAATCTTATTCCGTAGTGTGGAGGGCATTGAGG
Protein sequenceShow/hide protein sequence
MRESSSSCFGWNEEFQCIVVKGELFDSWVKSHRAAKGFLHKSFSYYDDLFYVFDKDQATGACLETFADVGSNMLNMFNDGVPLDDSHDKDIPTMYSQGVHMSLDEMFGTR
TGQASGRRNCSSGSKRKRGSQHYETVKVIRSVMEFRNDQLKAIVDWSKEKRATEVELHAKVVKQLQDIPELRSQDRTKLIQILFRSVEGIE