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MELO3C033145 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C033145
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr12:14684266..14685008
RNA-Seq ExpressionMELO3C033145
SyntenyMELO3C033145
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]1.7e-5477.4Show/hide
Query:  MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQL
        MFNDGVPLGDSH++DI T+YSQGV MSLDE+FG RAGQASERRN SS SKRK+GS+HYE VEVI SA +FGNDQLK I DW KEKRA +VELR  VVKQL
Subjt:  MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQL

Query:  QDIPKLQNRDRPKIIQILFHSVEGIEGFLSIPTELKLEYCNVLLEN
        QDIP+L+++DR K++QILF SVE IEGFLSIPT+LKLEYCN+LLEN
Subjt:  QDIPKLQNRDRPKIIQILFHSVEGIEGFLSIPTELKLEYCNVLLEN

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]3.0e-5679.45Show/hide
Query:  MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQL
        MFN  VPL DSH +DIP MYSQGV MS DEMFG RAGQASER+NCSS SKRKQGS+HYETVEVI+SA++FGNDQLKAIA+W KEKRA +VELRA V+KQL
Subjt:  MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQL

Query:  QDIPKLQNRDRPKIIQILFHSVEGIEGFLSIPTELKLEYCNVLLEN
        QDIP+LQ+RDR K+IQILF SVE IEGFLSIPTE KLEYCN+LL+N
Subjt:  QDIPKLQNRDRPKIIQILFHSVEGIEGFLSIPTELKLEYCNVLLEN

KAA0042340.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-74100Show/hide
Query:  MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQL
        MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQL
Subjt:  MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQL

Query:  QDIPKLQNRDRPKIIQILFHSVEGIEGFLSIPTELKLEYCNVLLEN
        QDIPKLQNRDRPKIIQILFHSVEGIEGFLSIPTELKLEYCNVLLEN
Subjt:  QDIPKLQNRDRPKIIQILFHSVEGIEGFLSIPTELKLEYCNVLLEN

KAA0066604.1 retrotransposon protein [Cucumis melo var. makuwa]2.8e-4678.12Show/hide
Query:  MYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQLQDIPKLQNRDRPKIIQIL
        MYSQGV MS +EMFG R GQASERRNCSS SKRK+GS+HYETVEVIRSAM+FGNDQLK IA+W KEKR  +VELRA VVKQLQ+I +L +RDR K++QIL
Subjt:  MYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQLQDIPKLQNRDRPKIIQIL

Query:  FHSVEGIEGFLSIPTELKLEYCNVLLEN
        FHSVE IEGFLSIP ELKLEYCN+LL+N
Subjt:  FHSVEGIEGFLSIPTELKLEYCNVLLEN

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]1.5e-5880.82Show/hide
Query:  MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQL
        MFND +PLGDSH EDIPTMYSQGV MS DEMFG RAGQASERRNCSS SKRK+GS+ YETVEVIRS M+FGN+QLKAIADW KEKRAM+VE+RA VVKQL
Subjt:  MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQL

Query:  QDIPKLQNRDRPKIIQILFHSVEGIEGFLSIPTELKLEYCNVLLEN
        QDIPKL+++DR K++QILF S+E IEGFLSIPTELKLEYCN+LL+N
Subjt:  QDIPKLQNRDRPKIIQILFHSVEGIEGFLSIPTELKLEYCNVLLEN

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859537.0e-5980.82Show/hide
Query:  MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQL
        MFND +PLGDSH EDIPTMYSQGV MS DEMFG RAGQASERRNCSS SKRK+GS+ YETVEVIRS M+FGN+QLKAIADW KEKRAM+VE+RA VVKQL
Subjt:  MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQL

Query:  QDIPKLQNRDRPKIIQILFHSVEGIEGFLSIPTELKLEYCNVLLEN
        QDIPKL+++DR K++QILF S+E IEGFLSIPTELKLEYCN+LL+N
Subjt:  QDIPKLQNRDRPKIIQILFHSVEGIEGFLSIPTELKLEYCNVLLEN

A0A5A7SQU2 Putative nuclease HARBI11.5e-5679.45Show/hide
Query:  MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQL
        MFN  VPL DSH +DIP MYSQGV MS DEMFG RAGQASER+NCSS SKRKQGS+HYETVEVI+SA++FGNDQLKAIA+W KEKRA +VELRA V+KQL
Subjt:  MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQL

Query:  QDIPKLQNRDRPKIIQILFHSVEGIEGFLSIPTELKLEYCNVLLEN
        QDIP+LQ+RDR K+IQILF SVE IEGFLSIPTE KLEYCN+LL+N
Subjt:  QDIPKLQNRDRPKIIQILFHSVEGIEGFLSIPTELKLEYCNVLLEN

A0A5A7U0H7 Retrotransposon protein7.0e-5980.82Show/hide
Query:  MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQL
        MFND +PLGDSH EDIPTMYSQGV MS DEMFG RAGQASERRNCSS SKRK+GS+ YETVEVIRS M+FGN+QLKAIADW KEKRAM+VE+RA VVKQL
Subjt:  MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQL

Query:  QDIPKLQNRDRPKIIQILFHSVEGIEGFLSIPTELKLEYCNVLLEN
        QDIPKL+++DR K++QILF S+E IEGFLSIPTELKLEYCN+LL+N
Subjt:  QDIPKLQNRDRPKIIQILFHSVEGIEGFLSIPTELKLEYCNVLLEN

A0A5D3BZU3 Retrotransposon protein8.1e-5577.4Show/hide
Query:  MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQL
        MFNDGVPLGDSH++DI T+YSQGV MSLDE+FG RAGQASERRN SS SKRK+GS+HYE VEVI SA +FGNDQLK I DW KEKRA +VELR  VVKQL
Subjt:  MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQL

Query:  QDIPKLQNRDRPKIIQILFHSVEGIEGFLSIPTELKLEYCNVLLEN
        QDIP+L+++DR K++QILF SVE IEGFLSIPT+LKLEYCN+LLEN
Subjt:  QDIPKLQNRDRPKIIQILFHSVEGIEGFLSIPTELKLEYCNVLLEN

A0A5D3CVB7 Retrotransposon protein5.4e-75100Show/hide
Query:  MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQL
        MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQL
Subjt:  MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQL

Query:  QDIPKLQNRDRPKIIQILFHSVEGIEGFLSIPTELKLEYCNVLLEN
        QDIPKLQNRDRPKIIQILFHSVEGIEGFLSIPTELKLEYCNVLLEN
Subjt:  QDIPKLQNRDRPKIIQILFHSVEGIEGFLSIPTELKLEYCNVLLEN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTAATGATGGTGTTCCCCTCGGTGATTCACATCATGAAGACATCCCAACGATGTATAGCCAAGGAGTGCTTATGTCACTAGATGAGATGTTTGGAACACGTGCAGG
TCAAGCAAGTGAGAGAAGAAATTGTTCAAGTAGAAGTAAGAGAAAACAAGGTAGCCAACATTATGAAACGGTAGAGGTGATCAGGAGTGCAATGAAATTTGGAAATGATC
AATTAAAGGCAATTGCAGATTGGCTAAAAGAGAAACGTGCAATGAAGGTCGAATTACGTGCTCTAGTCGTGAAACAGCTGCAAGATATCCCTAAACTACAAAACCGAGAT
AGGCCAAAGATTATACAAATCCTATTTCATAGTGTGGAGGGCATTGAGGGATTCCTGTCGATTCCAACAGAACTTAAATTGGAGTATTGCAATGTTCTCTTAGAAAAT
mRNA sequenceShow/hide mRNA sequence
ACGAGAGGGCCATTGTATAGTGGCTTTGGATGGAATGAAAAATTTCAATGCATCGTCGCAGAATGAGAGTTGTTTGATATTAAAGGCCTTCTAAACAAATCATTTCCATA
TTATGATGATGTATCCTATGTCTTTGGCAAAGATCAGGCAACAGAAGCACGTTCAGAGACCTTCGCTGATGTAGGATCTAATATCCCGAACATGTTTAATGATGGTGTTC
CCCTCGGTGATTCACATCATGAAGACATCCCAACGATGTATAGCCAAGGAGTGCTTATGTCACTAGATGAGATGTTTGGAACACGTGCAGGTCAAGCAAGTGAGAGAAGA
AATTGTTCAAGTAGAAGTAAGAGAAAACAAGGTAGCCAACATTATGAAACGGTAGAGGTGATCAGGAGTGCAATGAAATTTGGAAATGATCAATTAAAGGCAATTGCAGA
TTGGCTAAAAGAGAAACGTGCAATGAAGGTCGAATTACGTGCTCTAGTCGTGAAACAGCTGCAAGATATCCCTAAACTACAAAACCGAGATAGGCCAAAGATTATACAAA
TCCTATTTCATAGTGTGGAGGGCATTGAGGGATTCCTGTCGATTCCAACAGAACTTAAATTGGAGTATTGCAATGTTCTCTTAGAAAAT
Protein sequenceShow/hide protein sequence
MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQLQDIPKLQNRD
RPKIIQILFHSVEGIEGFLSIPTELKLEYCNVLLEN