; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C033199 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C033199
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr08:31947251..31947589
RNA-Seq ExpressionMELO3C033199
SyntenyMELO3C033199
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR024752 - Myb/SANT-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038975.1 retrotransposon protein [Cucumis melo var. makuwa]5.2e-4879.65Show/hide
Query:  MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCRVRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKC
        M+T +RAP+HVWT+EEE T VECL++LVSM GWKS++GTFRPGYLAQLVRMM +KLPGC+VRATT IDCRIKTLKRTFQAI EMRGPACSGF  ND+ KC
Subjt:  MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCRVRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKC

Query:  IITEKELFDNWVR
        I+ EKELFDNWVR
Subjt:  IITEKELFDNWVR
KAA0041588.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-4880.53Show/hide
Query:  MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCRVRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKC
        M+T +RAP+HVWT+EEE T VECL++LVSM GWKS++GTFRPGYLAQLVRMM +KLPGC+VRATT IDCRIKTLKRTFQAIVEMRGPACSGF  ND+ KC
Subjt:  MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCRVRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKC

Query:  IITEKELFDNWVR
        I+ EKELFDNWVR
Subjt:  IITEKELFDNWVR
KAA0045060.1 retrotransposon protein [Cucumis melo var. makuwa]2.3e-59100Show/hide
Query:  MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCRVRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKC
        MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCRVRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKC
Subjt:  MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCRVRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKC

Query:  IITEKELFDNW
        IITEKELFDNW
Subjt:  IITEKELFDNW
KAA0064022.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-4880.53Show/hide
Query:  MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCRVRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKC
        M+T +RAP+HVWT+EEE T VECL++LVSM GWKS++GTFRPGYLAQLVRMM KKLPGC+VRATT IDCRIKTLKRTFQAI EMRGPACSGF  ND+ KC
Subjt:  MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCRVRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKC

Query:  IITEKELFDNWVR
        I+ EKELFDNWVR
Subjt:  IITEKELFDNWVR
KAA0065929.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-4881.42Show/hide
Query:  MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCRVRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKC
        M+T +RAP+HVWTKEEE T VECL++LVSM GWKS++GTFRPGYLAQLVRMM +KLPGC+VRATT IDCRIKTLKRTFQAI EMRGPACSGF  ND+ KC
Subjt:  MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCRVRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKC

Query:  IITEKELFDNWVR
        II EKELFDNWVR
Subjt:  IITEKELFDNWVR
TrEMBL top hitse value%identityAlignment
A0A5A7TFA4 Retrotransposon protein8.7e-4980.53Show/hide
Query:  MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCRVRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKC
        M+T +RAP+HVWT+EEE T VECL++LVSM GWKS++GTFRPGYLAQLVRMM +KLPGC+VRATT IDCRIKTLKRTFQAIVEMRGPACSGF  ND+ KC
Subjt:  MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCRVRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKC

Query:  IITEKELFDNWVR
        I+ EKELFDNWVR
Subjt:  IITEKELFDNWVR
A0A5A7TPF3 Retrotransposon protein1.1e-59100Show/hide
Query:  MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCRVRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKC
        MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCRVRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKC
Subjt:  MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCRVRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKC

Query:  IITEKELFDNW
        IITEKELFDNW
Subjt:  IITEKELFDNW
A0A5A7V6Q9 Retrotransposon protein8.7e-4980.53Show/hide
Query:  MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCRVRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKC
        M+T +RAP+HVWT+EEE T VECL++LVSM GWKS++GTFRPGYLAQLVRMM KKLPGC+VRATT IDCRIKTLKRTFQAI EMRGPACSGF  ND+ KC
Subjt:  MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCRVRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKC

Query:  IITEKELFDNWVR
        I+ EKELFDNWVR
Subjt:  IITEKELFDNWVR
A0A5A7VKT2 Retrotransposon protein6.7e-4981.42Show/hide
Query:  MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCRVRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKC
        M+T +RAP+HVWTKEEE T VECL++LVSM GWKS++GTFRPGYLAQLVRMM +KLPGC+VRATT IDCRIKTLKRTFQAI EMRGPACSGF  ND+ KC
Subjt:  MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCRVRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKC

Query:  IITEKELFDNWVR
        II EKELFDNWVR
Subjt:  IITEKELFDNWVR
A0A5D3CWL2 Retrotransposon protein2.5e-4879.65Show/hide
Query:  MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCRVRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKC
        M+T +RAP+HVWT+EEE T VECL++LVSM GWKS++GTFRPGYLAQLVRMM +KLPGC+VRATT IDCRIKTLKRTFQAI EMRGPACSGF  ND+ KC
Subjt:  MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCRVRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKC

Query:  IITEKELFDNWVR
        I+ EKELFDNWVR
Subjt:  IITEKELFDNWVR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAACATTGTCGCGTGCCCCGAAGCATGTATGGACAAAGGAGGAGGAGGACACTTTTGTAGAGTGTTTAGTGGATTTGGTGTCCATGGAAGGATGGAAATCGAATAG
TGGTACGTTCCGACCAGGTTACTTAGCCCAACTGGTACGCATGATGACCAAAAAATTACCTGGATGTCGAGTCCGGGCAACCACTGCAATCGATTGCAGAATAAAGACAC
TTAAGCGGACATTCCAGGCCATCGTAGAAATGCGAGGGCCAGCGTGTAGTGGGTTCGACTGTAACGATGATGCAAAATGCATAATTACGGAGAAGGAACTCTTCGATAAC
TGGGTAAGG
mRNA sequenceShow/hide mRNA sequence
ATGACAACATTGTCGCGTGCCCCGAAGCATGTATGGACAAAGGAGGAGGAGGACACTTTTGTAGAGTGTTTAGTGGATTTGGTGTCCATGGAAGGATGGAAATCGAATAG
TGGTACGTTCCGACCAGGTTACTTAGCCCAACTGGTACGCATGATGACCAAAAAATTACCTGGATGTCGAGTCCGGGCAACCACTGCAATCGATTGCAGAATAAAGACAC
TTAAGCGGACATTCCAGGCCATCGTAGAAATGCGAGGGCCAGCGTGTAGTGGGTTCGACTGTAACGATGATGCAAAATGCATAATTACGGAGAAGGAACTCTTCGATAAC
TGGGTAAGG
Protein sequenceShow/hide protein sequence
MTTLSRAPKHVWTKEEEDTFVECLVDLVSMEGWKSNSGTFRPGYLAQLVRMMTKKLPGCRVRATTAIDCRIKTLKRTFQAIVEMRGPACSGFDCNDDAKCIITEKELFDN
WVR