; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C033211 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C033211
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr03:2940175..2940956
RNA-Seq ExpressionMELO3C033211
SyntenyMELO3C033211
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033551.1 retrotransposon protein [Cucumis melo var. makuwa]3.3e-4262.59Show/hide
Query:  MRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNM
        MRGP GSGF WND +KCIITERDVFDHWV THP AKG LNKPFPHYD L                                 +D IDMEFPAMCSPRMNM
Subjt:  MRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNM

Query:  SPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICECIEAAID
        SPE+M+GGRS RS+DGR GS+ QKRK SMQQFET+DLI EC+EAA D
Subjt:  SPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICECIEAAID

KAA0038274.1 retrotransposon protein [Cucumis melo var. makuwa]1.7e-3568.22Show/hide
Query:  MRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNM
        MR P  SGF WND +KCII +RDVFDHWVRTHP A+G LNKPF HYD LSYVF K RAT A  +TFADI  NVS   +S   EDG+DMEFPAMC+PR+NM
Subjt:  MRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNM

Query:  SPEDMIG
        SP+D++G
Subjt:  SPEDMIG

KAA0048148.1 retrotransposon protein [Cucumis melo var. makuwa]3.1e-4075.86Show/hide
Query:  HPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQ
        HP AK  LNKPF HYD LSYVF K +ATGAH+ETFADI SN+S   +S   +DGIDMEFP MCSPRMNMSP+DM+GGRS RSSDGRTGSSEQKRK SMQQ
Subjt:  HPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQ

Query:  FETFDLICECIEAAID
        FET+DLI EC+EAA D
Subjt:  FETFDLICECIEAAID

KAA0055070.1 retrotransposon protein [Cucumis melo var. makuwa]2.2e-75100Show/hide
Query:  MRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNM
        MRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNM
Subjt:  MRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNM

Query:  SPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICE
        SPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICE
Subjt:  SPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICE

KAA0066443.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]6.6e-4369.4Show/hide
Query:  FDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGG
        F  ND +K II ERD+FDHWVRTHP AK  +N PFPHY+ LSYVF K RATG  ++TFADI SNV  DN+S   EDGIDMEF AM S RMN+SPE M+G 
Subjt:  FDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGG

Query:  RSSRSSDGRTGSSEQKRKRSMQQFETFDLICECI
        RS + SDGRTGSS QKRKRSMQQFET+DLI EC+
Subjt:  RSSRSSDGRTGSSEQKRKRSMQQFETFDLICECI

TrEMBL top hitse value%identityAlignment
A0A5A7T479 Retrotransposon protein8.4e-3668.22Show/hide
Query:  MRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNM
        MR P  SGF WND +KCII +RDVFDHWVRTHP A+G LNKPF HYD LSYVF K RAT A  +TFADI  NVS   +S   EDG+DMEFPAMC+PR+NM
Subjt:  MRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNM

Query:  SPEDMIG
        SP+D++G
Subjt:  SPEDMIG

A0A5A7TYU4 Retrotransposon protein1.5e-4075.86Show/hide
Query:  HPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQ
        HP AK  LNKPF HYD LSYVF K +ATGAH+ETFADI SN+S   +S   +DGIDMEFP MCSPRMNMSP+DM+GGRS RSSDGRTGSSEQKRK SMQQ
Subjt:  HPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQ

Query:  FETFDLICECIEAAID
        FET+DLI EC+EAA D
Subjt:  FETFDLICECIEAAID

A0A5A7VE95 Putative nuclease HARBI13.2e-4369.4Show/hide
Query:  FDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGG
        F  ND +K II ERD+FDHWVRTHP AK  +N PFPHY+ LSYVF K RATG  ++TFADI SNV  DN+S   EDGIDMEF AM S RMN+SPE M+G 
Subjt:  FDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGG

Query:  RSSRSSDGRTGSSEQKRKRSMQQFETFDLICECI
        RS + SDGRTGSS QKRKRSMQQFET+DLI EC+
Subjt:  RSSRSSDGRTGSSEQKRKRSMQQFETFDLICECI

A0A5D3B9T0 Retrotransposon protein1.6e-4262.59Show/hide
Query:  MRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNM
        MRGP GSGF WND +KCIITERDVFDHWV THP AKG LNKPFPHYD L                                 +D IDMEFPAMCSPRMNM
Subjt:  MRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNM

Query:  SPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICECIEAAID
        SPE+M+GGRS RS+DGR GS+ QKRK SMQQFET+DLI EC+EAA D
Subjt:  SPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICECIEAAID

A0A5D3DLC6 Retrotransposon protein1.1e-75100Show/hide
Query:  MRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNM
        MRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNM
Subjt:  MRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNM

Query:  SPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICE
        SPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICE
Subjt:  SPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLICE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G24960.2 unknown protein3.4e-0528.07Show/hide
Query:  SGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHS
        +GF W+     +I + D+++ +++ HP A+ +  K  P Y  L ++FGK  + G ++
Subjt:  SGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGGCCCAGTAGGTAGTGGCTTCGACTGGAACGATGTCATCAAGTGCATCATCACCGAGAGGGACGTGTTCGATCATTGGGTCCGAACGCACCCTACAGCAAAAGG
ATTCCTGAACAAGCCATTCCCGCATTACGATACATTGTCGTACGTGTTCGGGAAATATCGAGCTACTGGGGCCCATTCGGAGACCTTTGCAGACATTGTTTCGAACGTGT
CAGTCGACAACAATAGTGCCCTCGCAGAAGATGGCATCGACATGGAGTTTCCTGCTATGTGTAGCCCGAGGATGAATATGTCCCCTGAGGACATGATAGGCGGTAGATCA
AGTCGATCGAGTGATGGTAGGACGGGCTCTAGTGAACAGAAAAGGAAGCGCTCCATGCAGCAGTTTGAGACGTTTGACCTGATTTGCGAATGTATAGAGGCTGCAATTGA
TTAG
mRNA sequenceShow/hide mRNA sequence
TTGAAAAAGACGTTTCAGGCCATTGTGGAGATGAGGGGCCCAGTAGGTAGTGGCTTCGACTGGAACGATGTCATCAAGTGCATCATCACCGAGAGGGACGTGTTCGATCA
TTGGGTCCGAACGCACCCTACAGCAAAAGGATTCCTGAACAAGCCATTCCCGCATTACGATACATTGTCGTACGTGTTCGGGAAATATCGAGCTACTGGGGCCCATTCGG
AGACCTTTGCAGACATTGTTTCGAACGTGTCAGTCGACAACAATAGTGCCCTCGCAGAAGATGGCATCGACATGGAGTTTCCTGCTATGTGTAGCCCGAGGATGAATATG
TCCCCTGAGGACATGATAGGCGGTAGATCAAGTCGATCGAGTGATGGTAGGACGGGCTCTAGTGAACAGAAAAGGAAGCGCTCCATGCAGCAGTTTGAGACGTTTGACCT
GATTTGCGAATGTATAGAGGCTGCAATTGATTAGCTGAGAACCATTGCAAAGTGGTCGAAGAAAGCTATGAGTCTGAAGGATGCGATGACAGTGCAGGTGATTGAGCTTA
TGGAGATCATCCCGAACCTTACTATGGCGGAGAAGAGTAAGTGTATCATGATAATGAATCAGAAGGTGTCGCTCATGAGGAGCTTCATCAAGATGTCTGATTCGATGATG
GCCGCTTACTGTAAGGTCCTCCTTGGCGGTGACCTGTGA
Protein sequenceShow/hide protein sequence
MRGPVGSGFDWNDVIKCIITERDVFDHWVRTHPTAKGFLNKPFPHYDTLSYVFGKYRATGAHSETFADIVSNVSVDNNSALAEDGIDMEFPAMCSPRMNMSPEDMIGGRS
SRSSDGRTGSSEQKRKRSMQQFETFDLICECIEAAID