CuGenDBv2

Gene ID	MELO3C033237
Organism	Cucumis melo DHL92 (Melon (DHL92) v4)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Genome location	chr08:12716973..12718370
RNA-Seq Expression	MELO3C033237
Synteny	MELO3C033237
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025854.1 uncharacterized protein E6C27_scaffold34G001280 [Cucumis melo var. makuwa]

6.1e-146

100

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Query:  MPDEFNNPSSPNYQMVHIKGFKFVISPPVINGFLGNIVDIDCSPSCPSTEVLATVLSGGTLSSSPVNGIPATALSIKYAILHKIGIANWFRSSHASSVSA
        MPDEFNNPSSPNYQMVHIKGFKFVISPPVINGFLGNIVDIDCSPSCPSTEVLATVLSGGTLSSSPVNGIPATALSIKYAILHKIGIANWFRSSHASSVSA
Subjt:  MPDEFNNPSSPNYQMVHIKGFKFVISPPVINGFLGNIVDIDCSPSCPSTEVLATVLSGGTLSSSPVNGIPATALSIKYAILHKIGIANWFRSSHASSVSA

Query:  ALGTFLYQICNDNKVDTGAFIYIQLLRHVGSFGVKVPIALPWFFSGLLLHLNGVVVTVTDALGSEPKTIVLSYRLFQGSHVPDIDHDVHPTRGPRIFDTT
        ALGTFLYQICNDNKVDTGAFIYIQLLRHVGSFGVKVPIALPWFFSGLLLHLNGVVVTVTDALGSEPKTIVLSYRLFQGSHVPDIDHDVHPTRGPRIFDTT
Subjt:  ALGTFLYQICNDNKVDTGAFIYIQLLRHVGSFGVKVPIALPWFFSGLLLHLNGVVVTVTDALGSEPKTIVLSYRLFQGSHVPDIDHDVHPTRGPRIFDTT

Query:  DWDESAEGFYVDRELAARIVNSLTAESRALTNSINLLSKRQLEIDALIRRLKSLAPSTIRQQPSS
        DWDESAEGFYVDRELAARIVNSLTAESRALTNSINLLSKRQLEIDALIRRLKSLAPSTIRQQPSS
Subjt:  DWDESAEGFYVDRELAARIVNSLTAESRALTNSINLLSKRQLEIDALIRRLKSLAPSTIRQQPSS

KAA0065370.1 uncharacterized protein E6C27_scaffold17G00320 [Cucumis melo var. makuwa]

3.6e-122

85.66

Show/hide

Query:  MPDEFNNPSSPNYQMVHIKGFKFVISPPVINGFLGNIVDIDCSPSCPSTEVLATVLSGGTLSSSPVNGIPATALSIKYAILHKIGIANWFRSSHASSVSA
        MPDEFNNPSSP+YQ VHI+GFKFVISP V N FLGNIVDIDCS SCP TEVLATVLSGGTLS+ PVNGIP  ALSIKYAILHKIGIANWF SSHASS+SA
Subjt:  MPDEFNNPSSPNYQMVHIKGFKFVISPPVINGFLGNIVDIDCSPSCPSTEVLATVLSGGTLSSSPVNGIPATALSIKYAILHKIGIANWFRSSHASSVSA

Query:  ALGTFLYQICNDNKVDTGAFIYIQLLRHVGSFGVKVPIALPWFFSGLLLHLNGVVVTVTDALGSEPKTIVLSYRLFQGSHVPDIDHDVHPTRGPRIFDTT
        ALGTFLYQICND+KVDTGAFIY QLLRHVG FGVKVPIAL  FFS LLLHLNG V+T TDA G +PKTI LSYRLFQGSHVP+IDH VHPTRGPRIFDTT
Subjt:  ALGTFLYQICNDNKVDTGAFIYIQLLRHVGSFGVKVPIALPWFFSGLLLHLNGVVVTVTDALGSEPKTIVLSYRLFQGSHVPDIDHDVHPTRGPRIFDTT

Query:  DWDESAEGFYVDRELAARIVNSLTAESRALTNSINLLSKRQLEIDALIRRLKSLAPSTIRQQPSS
        DWDE  EGFYV+RELAARIVNSLT ESRALTNSINLLS+R+LE+DALIR LKSLAPST RQQPSS
Subjt:  DWDESAEGFYVDRELAARIVNSLTAESRALTNSINLLSKRQLEIDALIRRLKSLAPSTIRQQPSS

KAA0066728.1 uncharacterized protein E6C27_scaffold271G00650 [Cucumis melo var. makuwa]

4.2e-123

86.79

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Query:  MPDEFNNPSSPNYQMVHIKGFKFVISPPVINGFLGNIVDIDCSPSCPSTEVLATVLSGGTLSSSPVNGIPATALSIKYAILHKIGIANWFRSSHASSVSA
        +PDEF+NPSSP+YQ VHI+ FKFVISP VINGFLGNIVDIDCSPSCP TE+LATVLSGGTLS+ PVNGIPA ALSIKYA LHKIGIANWF SSHASS+SA
Subjt:  MPDEFNNPSSPNYQMVHIKGFKFVISPPVINGFLGNIVDIDCSPSCPSTEVLATVLSGGTLSSSPVNGIPATALSIKYAILHKIGIANWFRSSHASSVSA

Query:  ALGTFLYQICNDNKVDTGAFIYIQLLRHVGSFGVKVPIALPWFFSGLLLHLNGVVVTVTDALGSEPKTIVLSYRLFQGSHVPDIDHDVHPTRGPRIFDTT
        ALGTFLYQICND+KVDTGAF+Y QLLRHVGSFGVKVPIALP FFS LLLHLNG V+T TDA G EPK IVLSYRLFQGSHV DIDHDVH TRGPRIFDTT
Subjt:  ALGTFLYQICNDNKVDTGAFIYIQLLRHVGSFGVKVPIALPWFFSGLLLHLNGVVVTVTDALGSEPKTIVLSYRLFQGSHVPDIDHDVHPTRGPRIFDTT

Query:  DWDESAEGFYVDRELAARIVNSLTAESRALTNSINLLSKRQLEIDALIRRLKSLAPSTIRQQPSS
        DWDESAEGFYVDRELAARIVNSLTAESRAL NSINLLS+R+LE+DALI  LKSLAPST RQQPSS
Subjt:  DWDESAEGFYVDRELAARIVNSLTAESRALTNSINLLSKRQLEIDALIRRLKSLAPSTIRQQPSS

TYK27876.1 uncharacterized protein E5676_scaffold384G00590 [Cucumis melo var. makuwa]

4.2e-123

86.79

Show/hide

Query:  MPDEFNNPSSPNYQMVHIKGFKFVISPPVINGFLGNIVDIDCSPSCPSTEVLATVLSGGTLSSSPVNGIPATALSIKYAILHKIGIANWFRSSHASSVSA
        +PDEF+NPSSP+YQ VHI+ FKFVISP VINGFLGNIVDIDCSPSCP TE+LATVLSGGTLS+ PVNGIPA ALSIKYA LHKIGIANWF SSHASS+SA
Subjt:  MPDEFNNPSSPNYQMVHIKGFKFVISPPVINGFLGNIVDIDCSPSCPSTEVLATVLSGGTLSSSPVNGIPATALSIKYAILHKIGIANWFRSSHASSVSA

Query:  ALGTFLYQICNDNKVDTGAFIYIQLLRHVGSFGVKVPIALPWFFSGLLLHLNGVVVTVTDALGSEPKTIVLSYRLFQGSHVPDIDHDVHPTRGPRIFDTT
        ALGTFLYQICND+KVDTGAF+Y QLLRHVGSFGVKVPIALP FFS LLLHLNG V+T TDA G EPK IVLSYRLFQGSHV DIDHDVH TRGPRIFDTT
Subjt:  ALGTFLYQICNDNKVDTGAFIYIQLLRHVGSFGVKVPIALPWFFSGLLLHLNGVVVTVTDALGSEPKTIVLSYRLFQGSHVPDIDHDVHPTRGPRIFDTT

Query:  DWDESAEGFYVDRELAARIVNSLTAESRALTNSINLLSKRQLEIDALIRRLKSLAPSTIRQQPSS
        DWDESAEGFYVDRELAARIVNSLTAESRAL NSINLLS+R+LE+DALI  LKSLAPST RQQPSS
Subjt:  DWDESAEGFYVDRELAARIVNSLTAESRALTNSINLLSKRQLEIDALIRRLKSLAPSTIRQQPSS

XP_016903074.1 PREDICTED: uncharacterized protein LOC107992031 [Cucumis melo]

4.2e-123

86.79

Show/hide

Query:  MPDEFNNPSSPNYQMVHIKGFKFVISPPVINGFLGNIVDIDCSPSCPSTEVLATVLSGGTLSSSPVNGIPATALSIKYAILHKIGIANWFRSSHASSVSA
        +PDEF+NPSSP+YQ VHI+ FKFVISP VINGFLGNIVDIDCSPSCP TE+LATVLSGGTLS+ PVNGIPA ALSIKYA LHKIGIANWF SSHASS+SA
Subjt:  MPDEFNNPSSPNYQMVHIKGFKFVISPPVINGFLGNIVDIDCSPSCPSTEVLATVLSGGTLSSSPVNGIPATALSIKYAILHKIGIANWFRSSHASSVSA

Query:  ALGTFLYQICNDNKVDTGAFIYIQLLRHVGSFGVKVPIALPWFFSGLLLHLNGVVVTVTDALGSEPKTIVLSYRLFQGSHVPDIDHDVHPTRGPRIFDTT
        ALGTFLYQICND+KVDTGAF+Y QLLRHVGSFGVKVPIALP FFS LLLHLNG V+T TDA G EPK IVLSYRLFQGSHV DIDHDVH TRGPRIFDTT
Subjt:  ALGTFLYQICNDNKVDTGAFIYIQLLRHVGSFGVKVPIALPWFFSGLLLHLNGVVVTVTDALGSEPKTIVLSYRLFQGSHVPDIDHDVHPTRGPRIFDTT

Query:  DWDESAEGFYVDRELAARIVNSLTAESRALTNSINLLSKRQLEIDALIRRLKSLAPSTIRQQPSS
        DWDESAEGFYVDRELAARIVNSLTAESRAL NSINLLS+R+LE+DALI  LKSLAPST RQQPSS
Subjt:  DWDESAEGFYVDRELAARIVNSLTAESRALTNSINLLSKRQLEIDALIRRLKSLAPSTIRQQPSS

TrEMBL top hits

e value

%identity

Alignment

A0A1S4E4C3 uncharacterized protein LOC107992031

2.0e-123

86.79

Show/hide

Query:  MPDEFNNPSSPNYQMVHIKGFKFVISPPVINGFLGNIVDIDCSPSCPSTEVLATVLSGGTLSSSPVNGIPATALSIKYAILHKIGIANWFRSSHASSVSA
        +PDEF+NPSSP+YQ VHI+ FKFVISP VINGFLGNIVDIDCSPSCP TE+LATVLSGGTLS+ PVNGIPA ALSIKYA LHKIGIANWF SSHASS+SA
Subjt:  MPDEFNNPSSPNYQMVHIKGFKFVISPPVINGFLGNIVDIDCSPSCPSTEVLATVLSGGTLSSSPVNGIPATALSIKYAILHKIGIANWFRSSHASSVSA

Query:  ALGTFLYQICNDNKVDTGAFIYIQLLRHVGSFGVKVPIALPWFFSGLLLHLNGVVVTVTDALGSEPKTIVLSYRLFQGSHVPDIDHDVHPTRGPRIFDTT
        ALGTFLYQICND+KVDTGAF+Y QLLRHVGSFGVKVPIALP FFS LLLHLNG V+T TDA G EPK IVLSYRLFQGSHV DIDHDVH TRGPRIFDTT
Subjt:  ALGTFLYQICNDNKVDTGAFIYIQLLRHVGSFGVKVPIALPWFFSGLLLHLNGVVVTVTDALGSEPKTIVLSYRLFQGSHVPDIDHDVHPTRGPRIFDTT

Query:  DWDESAEGFYVDRELAARIVNSLTAESRALTNSINLLSKRQLEIDALIRRLKSLAPSTIRQQPSS
        DWDESAEGFYVDRELAARIVNSLTAESRAL NSINLLS+R+LE+DALI  LKSLAPST RQQPSS
Subjt:  DWDESAEGFYVDRELAARIVNSLTAESRALTNSINLLSKRQLEIDALIRRLKSLAPSTIRQQPSS

A0A5A7SJJ1 Uncharacterized protein

2.9e-146

100

Show/hide

Query:  MPDEFNNPSSPNYQMVHIKGFKFVISPPVINGFLGNIVDIDCSPSCPSTEVLATVLSGGTLSSSPVNGIPATALSIKYAILHKIGIANWFRSSHASSVSA
        MPDEFNNPSSPNYQMVHIKGFKFVISPPVINGFLGNIVDIDCSPSCPSTEVLATVLSGGTLSSSPVNGIPATALSIKYAILHKIGIANWFRSSHASSVSA
Subjt:  MPDEFNNPSSPNYQMVHIKGFKFVISPPVINGFLGNIVDIDCSPSCPSTEVLATVLSGGTLSSSPVNGIPATALSIKYAILHKIGIANWFRSSHASSVSA

Query:  ALGTFLYQICNDNKVDTGAFIYIQLLRHVGSFGVKVPIALPWFFSGLLLHLNGVVVTVTDALGSEPKTIVLSYRLFQGSHVPDIDHDVHPTRGPRIFDTT
        ALGTFLYQICNDNKVDTGAFIYIQLLRHVGSFGVKVPIALPWFFSGLLLHLNGVVVTVTDALGSEPKTIVLSYRLFQGSHVPDIDHDVHPTRGPRIFDTT
Subjt:  ALGTFLYQICNDNKVDTGAFIYIQLLRHVGSFGVKVPIALPWFFSGLLLHLNGVVVTVTDALGSEPKTIVLSYRLFQGSHVPDIDHDVHPTRGPRIFDTT

Query:  DWDESAEGFYVDRELAARIVNSLTAESRALTNSINLLSKRQLEIDALIRRLKSLAPSTIRQQPSS
        DWDESAEGFYVDRELAARIVNSLTAESRALTNSINLLSKRQLEIDALIRRLKSLAPSTIRQQPSS
Subjt:  DWDESAEGFYVDRELAARIVNSLTAESRALTNSINLLSKRQLEIDALIRRLKSLAPSTIRQQPSS

A0A5A7VG44 Reverse transcriptase Ty1/copia-type domain-containing protein

2.0e-123

86.79

Show/hide

Query:  MPDEFNNPSSPNYQMVHIKGFKFVISPPVINGFLGNIVDIDCSPSCPSTEVLATVLSGGTLSSSPVNGIPATALSIKYAILHKIGIANWFRSSHASSVSA
        +PDEF+NPSSP+YQ VHI+ FKFVISP VINGFLGNIVDIDCSPSCP TE+LATVLSGGTLS+ PVNGIPA ALSIKYA LHKIGIANWF SSHASS+SA
Subjt:  MPDEFNNPSSPNYQMVHIKGFKFVISPPVINGFLGNIVDIDCSPSCPSTEVLATVLSGGTLSSSPVNGIPATALSIKYAILHKIGIANWFRSSHASSVSA

Query:  ALGTFLYQICNDNKVDTGAFIYIQLLRHVGSFGVKVPIALPWFFSGLLLHLNGVVVTVTDALGSEPKTIVLSYRLFQGSHVPDIDHDVHPTRGPRIFDTT
        ALGTFLYQICND+KVDTGAF+Y QLLRHVGSFGVKVPIALP FFS LLLHLNG V+T TDA G EPK IVLSYRLFQGSHV DIDHDVH TRGPRIFDTT
Subjt:  ALGTFLYQICNDNKVDTGAFIYIQLLRHVGSFGVKVPIALPWFFSGLLLHLNGVVVTVTDALGSEPKTIVLSYRLFQGSHVPDIDHDVHPTRGPRIFDTT

Query:  DWDESAEGFYVDRELAARIVNSLTAESRALTNSINLLSKRQLEIDALIRRLKSLAPSTIRQQPSS
        DWDESAEGFYVDRELAARIVNSLTAESRAL NSINLLS+R+LE+DALI  LKSLAPST RQQPSS
Subjt:  DWDESAEGFYVDRELAARIVNSLTAESRALTNSINLLSKRQLEIDALIRRLKSLAPSTIRQQPSS

A0A5D3DB71 Reverse transcriptase Ty1/copia-type domain-containing protein

1.7e-122

85.66

Show/hide

Query:  MPDEFNNPSSPNYQMVHIKGFKFVISPPVINGFLGNIVDIDCSPSCPSTEVLATVLSGGTLSSSPVNGIPATALSIKYAILHKIGIANWFRSSHASSVSA
        MPDEFNNPSSP+YQ VHI+GFKFVISP V N FLGNIVDIDCS SCP TEVLATVLSGGTLS+ PVNGIP  ALSIKYAILHKIGIANWF SSHASS+SA
Subjt:  MPDEFNNPSSPNYQMVHIKGFKFVISPPVINGFLGNIVDIDCSPSCPSTEVLATVLSGGTLSSSPVNGIPATALSIKYAILHKIGIANWFRSSHASSVSA

Query:  ALGTFLYQICNDNKVDTGAFIYIQLLRHVGSFGVKVPIALPWFFSGLLLHLNGVVVTVTDALGSEPKTIVLSYRLFQGSHVPDIDHDVHPTRGPRIFDTT
        ALGTFLYQICND+KVDTGAFIY QLLRHVG FGVKVPIAL  FFS LLLHLNG V+T TDA G +PKTI LSYRLFQGSHVP+IDH VHPTRGPRIFDTT
Subjt:  ALGTFLYQICNDNKVDTGAFIYIQLLRHVGSFGVKVPIALPWFFSGLLLHLNGVVVTVTDALGSEPKTIVLSYRLFQGSHVPDIDHDVHPTRGPRIFDTT

Query:  DWDESAEGFYVDRELAARIVNSLTAESRALTNSINLLSKRQLEIDALIRRLKSLAPSTIRQQPSS
        DWDE  EGFYV+RELAARIVNSLT ESRALTNSINLLS+R+LE+DALIR LKSLAPST RQQPSS
Subjt:  DWDESAEGFYVDRELAARIVNSLTAESRALTNSINLLSKRQLEIDALIRRLKSLAPSTIRQQPSS

A0A5D3DVV8 Reverse transcriptase Ty1/copia-type domain-containing protein

2.0e-123

86.79

Show/hide

Query:  MPDEFNNPSSPNYQMVHIKGFKFVISPPVINGFLGNIVDIDCSPSCPSTEVLATVLSGGTLSSSPVNGIPATALSIKYAILHKIGIANWFRSSHASSVSA
        +PDEF+NPSSP+YQ VHI+ FKFVISP VINGFLGNIVDIDCSPSCP TE+LATVLSGGTLS+ PVNGIPA ALSIKYA LHKIGIANWF SSHASS+SA
Subjt:  MPDEFNNPSSPNYQMVHIKGFKFVISPPVINGFLGNIVDIDCSPSCPSTEVLATVLSGGTLSSSPVNGIPATALSIKYAILHKIGIANWFRSSHASSVSA

Query:  ALGTFLYQICNDNKVDTGAFIYIQLLRHVGSFGVKVPIALPWFFSGLLLHLNGVVVTVTDALGSEPKTIVLSYRLFQGSHVPDIDHDVHPTRGPRIFDTT
        ALGTFLYQICND+KVDTGAF+Y QLLRHVGSFGVKVPIALP FFS LLLHLNG V+T TDA G EPK IVLSYRLFQGSHV DIDHDVH TRGPRIFDTT
Subjt:  ALGTFLYQICNDNKVDTGAFIYIQLLRHVGSFGVKVPIALPWFFSGLLLHLNGVVVTVTDALGSEPKTIVLSYRLFQGSHVPDIDHDVHPTRGPRIFDTT

Query:  DWDESAEGFYVDRELAARIVNSLTAESRALTNSINLLSKRQLEIDALIRRLKSLAPSTIRQQPSS
        DWDESAEGFYVDRELAARIVNSLTAESRAL NSINLLS+R+LE+DALI  LKSLAPST RQQPSS
Subjt:  DWDESAEGFYVDRELAARIVNSLTAESRALTNSINLLSKRQLEIDALIRRLKSLAPSTIRQQPSS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCCTGATGAGTTTAATAATCCAAGTAGCCCTAATTATCAGATGGTTCATATTAAAGGGTTCAAATTTGTGATTTCTCCTCCTGTGATTAATGGTTTTCTTGGGAATAT
TGTTGATATTGACTGCTCTCCATCGTGTCCTTCTACTGAGGTTCTAGCTACTGTCTTATCTGGTGGGACCTTGTCGTCATCACCTGTAAATGGGATTCCTGCAACTGCTC
TCAGCATCAAATATGCCATCCTGCACAAGATTGGCATTGCTAATTGGTTCCGTTCCTCTCATGCCTCCAGTGTATCTGCTGCTTTAGGTACATTTTTGTATCAAATTTGC
AATGATAATAAAGTAGATACGGGTGCATTCATTTACATTCAGCTGTTGAGGCATGTTGGTTCTTTTGGGGTTAAGGTTCCAATTGCTCTTCCGTGGTTTTTCTCCGGTCT
GTTACTTCACTTAAATGGAGTTGTGGTTACTGTAACTGATGCTCTTGGATCTGAACCTAAAACAATTGTCCTTAGCTACAGACTCTTTCAAGGCAGTCATGTGCCCGATA
TTGACCATGATGTGCATCCGACTCGTGGCCCACGTATTTTTGACACTACTGACTGGGATGAGTCTGCTGAAGGTTTCTATGTGGATCGTGAGTTAGCTGCCCGCATTGTT
AATTCTTTGACTGCTGAATCTCGAGCACTGACTAACTCCATCAATCTGTTGTCTAAACGTCAATTGGAGATTGATGCTCTCATTCGACGTTTGAAGTCATTGGCACCATC
TACTATTCGTCAGCAGCCATCTTCCGACTGGCTGGCTTACGCAGAACAGGAGAGAAAAAAGTTACGTTGCTAA

mRNA sequence

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Protein sequence

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MPDEFNNPSSPNYQMVHIKGFKFVISPPVINGFLGNIVDIDCSPSCPSTEVLATVLSGGTLSSSPVNGIPATALSIKYAILHKIGIANWFRSSHASSVSAALGTFLYQIC
NDNKVDTGAFIYIQLLRHVGSFGVKVPIALPWFFSGLLLHLNGVVVTVTDALGSEPKTIVLSYRLFQGSHVPDIDHDVHPTRGPRIFDTTDWDESAEGFYVDRELAARIV
NSLTAESRALTNSINLLSKRQLEIDALIRRLKSLAPSTIRQQPSSDWLAYAEQERKKLRC

MELO3C033237 (gene) of Melon (DHL92) v4 genome