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MELO3C033247 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C033247
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionReverse transcriptase
Genome locationchr11:15951840..15953246
RNA-Seq ExpressionMELO3C033247
SyntenyMELO3C033247
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037766.1 putative polyprotein [Cucumis melo var. makuwa]1.3e-5853.79Show/hide
Query:  MGIKVERLALRRNWKESCHHVLVDDAGRIRTGCKVLPK--------------------------------------------------------------
        MGIKVERLALRRNWKESCHHVLVDD GRIRTGCKVLPK                                                              
Subjt:  MGIKVERLALRRNWKESCHHVLVDDAGRIRTGCKVLPK--------------------------------------------------------------

Query:  --------------------------------------------LVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSG
                                                    LVETALRVEQSITEEKS VELSRGTST SGFRGREQRRF PGINISSRQDFKNRS 
Subjt:  --------------------------------------------LVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSG

Query:  GQASRNVSYGSVFRRQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGSGV
        GQ  RNVSYGSVF+RQ QRIPSQPIRSTVR QP QES+AS V R PCTSCGRNHRGQCLVG+GV
Subjt:  GQASRNVSYGSVFRRQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGSGV

KAA0050492.1 uncharacterized protein E6C27_scaffold175G001240 [Cucumis melo var. makuwa]3.0e-5596.69Show/hide
Query:  KLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSGGQASRNVSYGSVFRRQSQRIPSQPIRSTVRSQPGQESIASTVR
        +LVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRF PGINISSRQDFKNRSGGQASRNVSYGSVF+RQSQRIPSQPIRSTVRSQPGQESIASTVR
Subjt:  KLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSGGQASRNVSYGSVFRRQSQRIPSQPIRSTVRSQPGQESIASTVR

Query:  RIPCTSCGRNHRGQCLVGSGV
        RIPCTSCGRNHRGQCLVG+GV
Subjt:  RIPCTSCGRNHRGQCLVGSGV

KAA0062248.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.8e-5849.83Show/hide
Query:  MGIKVERLALRRNWKESCHHVLVDDAGRIRTGCKVLPK--------------------------------------------------------------
        MGIKVERLALRRNWKESCHHVLVDDAGRIRTGCKVLPK                                                              
Subjt:  MGIKVERLALRRNWKESCHHVLVDDAGRIRTGCKVLPK--------------------------------------------------------------

Query:  ---------------------------------------------------------------------------------LVETALRVEQSITEEKSAV
                                                                                         LVETA  VEQSITEEKSAV
Subjt:  ---------------------------------------------------------------------------------LVETALRVEQSITEEKSAV

Query:  ELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSGGQASRNVSYGSVFRRQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGSG
        ELSRGTSTASGFRGREQRRF PGINISSRQDFKNRS GQASRNVSYGSVF+RQSQRIPSQPIRSTVRSQPGQESIASTVR  PCTSCGRNHRGQCLVG+G
Subjt:  ELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSGGQASRNVSYGSVFRRQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGSG

Query:  V
        V
Subjt:  V

KAA0066849.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.0e-5596.69Show/hide
Query:  KLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSGGQASRNVSYGSVFRRQSQRIPSQPIRSTVRSQPGQESIASTVR
        +LVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRF PGINISSRQDFKNRSGGQASRNVSYGSVF+RQSQRIPSQPIRSTVRSQPGQESIASTVR
Subjt:  KLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSGGQASRNVSYGSVFRRQSQRIPSQPIRSTVRSQPGQESIASTVR

Query:  RIPCTSCGRNHRGQCLVGSGV
        RIPCTSCGRNHRGQCLVG+GV
Subjt:  RIPCTSCGRNHRGQCLVGSGV

TYK02171.1 uncharacterized protein E5676_scaffold388G00680 [Cucumis melo var. makuwa]9.4e-6599.26Show/hide
Query:  KLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSGGQASRNVSYGSVFRRQSQRIPSQPIRSTVRSQPGQESIASTVR
        +LVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSGGQASRNVSYGSVFRRQSQRIPSQPIRSTVRSQPGQESIASTVR
Subjt:  KLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSGGQASRNVSYGSVFRRQSQRIPSQPIRSTVRSQPGQESIASTVR

Query:  RIPCTSCGRNHRGQCLVGSGVPVRTARTFQERLSV
        RIPCTSCGRNHRGQCLVGSGVPVRTARTFQERLSV
Subjt:  RIPCTSCGRNHRGQCLVGSGVPVRTARTFQERLSV

TrEMBL top hitse value%identityAlignment
A0A5A7T6G9 Putative polyprotein6.4e-5953.79Show/hide
Query:  MGIKVERLALRRNWKESCHHVLVDDAGRIRTGCKVLPK--------------------------------------------------------------
        MGIKVERLALRRNWKESCHHVLVDD GRIRTGCKVLPK                                                              
Subjt:  MGIKVERLALRRNWKESCHHVLVDDAGRIRTGCKVLPK--------------------------------------------------------------

Query:  --------------------------------------------LVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSG
                                                    LVETALRVEQSITEEKS VELSRGTST SGFRGREQRRF PGINISSRQDFKNRS 
Subjt:  --------------------------------------------LVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSG

Query:  GQASRNVSYGSVFRRQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGSGV
        GQ  RNVSYGSVF+RQ QRIPSQPIRSTVR QP QES+AS V R PCTSCGRNHRGQCLVG+GV
Subjt:  GQASRNVSYGSVFRRQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGSGV

A0A5A7U2V7 Reverse transcriptase1.5e-5596.69Show/hide
Query:  KLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSGGQASRNVSYGSVFRRQSQRIPSQPIRSTVRSQPGQESIASTVR
        +LVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRF PGINISSRQDFKNRSGGQASRNVSYGSVF+RQSQRIPSQPIRSTVRSQPGQESIASTVR
Subjt:  KLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSGGQASRNVSYGSVFRRQSQRIPSQPIRSTVRSQPGQESIASTVR

Query:  RIPCTSCGRNHRGQCLVGSGV
        RIPCTSCGRNHRGQCLVG+GV
Subjt:  RIPCTSCGRNHRGQCLVGSGV

A0A5A7V3R5 DNA/RNA polymerases superfamily protein1.8e-5849.83Show/hide
Query:  MGIKVERLALRRNWKESCHHVLVDDAGRIRTGCKVLPK--------------------------------------------------------------
        MGIKVERLALRRNWKESCHHVLVDDAGRIRTGCKVLPK                                                              
Subjt:  MGIKVERLALRRNWKESCHHVLVDDAGRIRTGCKVLPK--------------------------------------------------------------

Query:  ---------------------------------------------------------------------------------LVETALRVEQSITEEKSAV
                                                                                         LVETA  VEQSITEEKSAV
Subjt:  ---------------------------------------------------------------------------------LVETALRVEQSITEEKSAV

Query:  ELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSGGQASRNVSYGSVFRRQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGSG
        ELSRGTSTASGFRGREQRRF PGINISSRQDFKNRS GQASRNVSYGSVF+RQSQRIPSQPIRSTVRSQPGQESIASTVR  PCTSCGRNHRGQCLVG+G
Subjt:  ELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSGGQASRNVSYGSVFRRQSQRIPSQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGSG

Query:  V
        V
Subjt:  V

A0A5D3BR01 Retrotrans_gag domain-containing protein4.5e-6599.26Show/hide
Query:  KLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSGGQASRNVSYGSVFRRQSQRIPSQPIRSTVRSQPGQESIASTVR
        +LVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSGGQASRNVSYGSVFRRQSQRIPSQPIRSTVRSQPGQESIASTVR
Subjt:  KLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSGGQASRNVSYGSVFRRQSQRIPSQPIRSTVRSQPGQESIASTVR

Query:  RIPCTSCGRNHRGQCLVGSGVPVRTARTFQERLSV
        RIPCTSCGRNHRGQCLVGSGVPVRTARTFQERLSV
Subjt:  RIPCTSCGRNHRGQCLVGSGVPVRTARTFQERLSV

A0A5D3BS67 Reverse transcriptase1.5e-5596.69Show/hide
Query:  KLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSGGQASRNVSYGSVFRRQSQRIPSQPIRSTVRSQPGQESIASTVR
        +LVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRF PGINISSRQDFKNRSGGQASRNVSYGSVF+RQSQRIPSQPIRSTVRSQPGQESIASTVR
Subjt:  KLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSGGQASRNVSYGSVFRRQSQRIPSQPIRSTVRSQPGQESIASTVR

Query:  RIPCTSCGRNHRGQCLVGSGV
        RIPCTSCGRNHRGQCLVG+GV
Subjt:  RIPCTSCGRNHRGQCLVGSGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAATTAAGGTAGAGCGGTTAGCTCTAAGAAGAAACTGGAAAGAGTCGTGCCACCACGTACTGGTAGACGACGCCGGCAGAATCAGGACGGGATGCAAGGTCCTACC
CAAGTTAGTGGAGACTGCCCTTCGTGTGGAGCAGAGTATAACAGAAGAGAAATCGGCAGTGGAGCTTAGTCGTGGGACTTCAACAGCTAGTGGATTTAGAGGCCGTGAGC
AGCGGAGGTTCATGCCTGGGATAAATATTTCAAGCCGTCAAGATTTTAAGAATCGCTCTGGAGGCCAAGCATCGAGGAACGTGAGTTATGGTAGTGTTTTTCGGAGACAG
AGCCAGAGAATACCTAGTCAACCCATTAGATCAACAGTAAGATCGCAACCAGGTCAGGAGTCCATTGCTAGTACCGTCAGGCGAATACCATGCACGAGTTGTGGCAGGAA
CCATCGAGGTCAGTGTTTGGTAGGTTCCGGTGTACCAGTGCGAACAGCCAGGACATTTCAAGAAAGATTGTCCGTA
mRNA sequenceShow/hide mRNA sequence
AAGCAGAGTCGACAGATACAGGTACAGAAAAGCGTTGTTCGTCGGCTTCACGCCATCTTTCGATCTAAGGTAGCAGGTAGTCTGGGAGGGGGTGTGACAACTTGGTATCA
GAGCAGTTTGCTCCATGGGAATTAAGGTAGAGCGGTTAGCTCTAAGAAGAAACTGGAAAGAGTCGTGCCACCACGTACTGGTAGACGACGCCGGCAGAATCAGGACGGGA
TGCAAGGTCCTACCCAAGTTAGTGGAGACTGCCCTTCGTGTGGAGCAGAGTATAACAGAAGAGAAATCGGCAGTGGAGCTTAGTCGTGGGACTTCAACAGCTAGTGGATT
TAGAGGCCGTGAGCAGCGGAGGTTCATGCCTGGGATAAATATTTCAAGCCGTCAAGATTTTAAGAATCGCTCTGGAGGCCAAGCATCGAGGAACGTGAGTTATGGTAGTG
TTTTTCGGAGACAGAGCCAGAGAATACCTAGTCAACCCATTAGATCAACAGTAAGATCGCAACCAGGTCAGGAGTCCATTGCTAGTACCGTCAGGCGAATACCATGCACG
AGTTGTGGCAGGAACCATCGAGGTCAGTGTTTGGTAGGTTCCGGTGTACCAGTGCGAACAGCCAGGACATTTCAAGAAAGATTGTCCGTAG
Protein sequenceShow/hide protein sequence
MGIKVERLALRRNWKESCHHVLVDDAGRIRTGCKVLPKLVETALRVEQSITEEKSAVELSRGTSTASGFRGREQRRFMPGINISSRQDFKNRSGGQASRNVSYGSVFRRQ
SQRIPSQPIRSTVRSQPGQESIASTVRRIPCTSCGRNHRGQCLVGSGVPVRTARTFQERLSV