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MELO3C033263 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C033263
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr08:14983042..14990870
RNA-Seq ExpressionMELO3C033263
SyntenyMELO3C033263
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]9.5e-6257.92Show/hide
Query:  STKFSSKPGGFLVFSDALSILELYKLNQKLYLVS---------CIVFENEEFYVYFINFGYVLRKLWVLEVRISNLENLELWVVMPRGNRPSLQTGELDK
        ST FSSKPGGFLVFSDALSILE++K NQKLYL+          C+   + +F++ ++   +   +LWVLEVRISNLENLE    MPRGNR SLQT E+DK
Subjt:  STKFSSKPGGFLVFSDALSILELYKLNQKLYLVS---------CIVFENEEFYVYFINFGYVLRKLWVLEVRISNLENLELWVVMPRGNRPSLQTGELDK

Query:  TIIFPLSTLSVLRDNDAVVSAGRASLRQRRWEC-IGRILG--------LVEIELPAPNALPTSAESSRSNSSTWLELLFYKPSDVRAASSVCWEGFRGFL
        T+IFPLSTLSVL DNDAVVSAG+A LRQRRWEC  G            LVEIELP P+ LPTSAESSRSNSSTWLE L+++   V     V  +  R   
Subjt:  TIIFPLSTLSVLRDNDAVVSAGRASLRQRRWEC-IGRILG--------LVEIELPAPNALPTSAESSRSNSSTWLELLFYKPSDVRAASSVCWEGFRGFL

Query:  CVVFHVEYSISKIGSAEIVRGDDVCWLHAFFRAKTAGGPGGGVTSRLIYSIRASKMHIL
        C+++          SA IVRGDDVCWLHA FRAKTAGGPGGGVT+   Y  + S  H+L
Subjt:  CVVFHVEYSISKIGSAEIVRGDDVCWLHAFFRAKTAGGPGGGVTSRLIYSIRASKMHIL

KAA0053207.1 hypothetical protein E6C27_scaffold1192G00340 [Cucumis melo var. makuwa]7.0e-7385.08Show/hide
Query:  MQSQPLQNLGATANLWLFYSSTKFSSKPGGFLVFSDALSILELYKLNQKLYLVSCIVFENEEFYVYFINFGYVLRKLWVLEVRISNLENLELWVVMPRGN
        MQSQPLQNLGATANLWLFYSSTKFSSKPGGFLVFSDALSILELYKLNQKLYLVSCIVFENEEFYVYFINFGYVLRKLWVLEVRISNLENLEL    PRGN
Subjt:  MQSQPLQNLGATANLWLFYSSTKFSSKPGGFLVFSDALSILELYKLNQKLYLVSCIVFENEEFYVYFINFGYVLRKLWVLEVRISNLENLELWVVMPRGN

Query:  RPSLQTGELDKTIIFPLSTLSVLRDNDAVVSAGRASLRQRRWECIGRILGLVEIELPAPNALPTSAESSRSNSSTWLELLF
        RPSLQTGELDKTIIFPLSTLSVLRDNDAV                      VEIELPAPNALPTSAESSRSNSSTWLEL F
Subjt:  RPSLQTGELDKTIIFPLSTLSVLRDNDAVVSAGRASLRQRRWECIGRILGLVEIELPAPNALPTSAESSRSNSSTWLELLF

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]5.2e-6056.93Show/hide
Query:  MQSQPLQNLGATANLWLFYSSTKFSSKPGGFLVFSDALSILELYKLNQKLYLVS---------CIVFENEEFYVYFINFGYVLRKLWVLEVRISNLENLE
        MQSQPLQNLGAT NL      T+ SSKPGGFLVFSDALSILE++K NQKLYL+          C+   + +F+  ++   +    L VLEVRISNLENLE
Subjt:  MQSQPLQNLGATANLWLFYSSTKFSSKPGGFLVFSDALSILELYKLNQKLYLVS---------CIVFENEEFYVYFINFGYVLRKLWVLEVRISNLENLE

Query:  LWVVMPRGNRPSLQTGELDKTIIFPLSTLSVLRDNDAVVSAGRASLRQRRWECIGRILGLVEIELPAPNALPTSAESSRSNSSTWLEL---------LFY
            MPRGNR SLQTGELDKT+IF LSTLSVL DN+AV                      VEIELP P+ LPTSAES  SNSSTWLEL         LFY
Subjt:  LWVVMPRGNRPSLQTGELDKTIIFPLSTLSVLRDNDAVVSAGRASLRQRRWECIGRILGLVEIELPAPNALPTSAESSRSNSSTWLEL---------LFY

Query:  KPSDVRAASSVCWEGFRGFLCVVFHVEYSISKIGSAEIVRGDDVCWLHAFFRAKTAGGPGGGVTSRL
        KPSDVRAAS VCWE                   GSA IVRGDDVCWLH  FRAK AGGPGGGVT R+
Subjt:  KPSDVRAASSVCWEGFRGFLCVVFHVEYSISKIGSAEIVRGDDVCWLHAFFRAKTAGGPGGGVTSRL

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]9.5e-6257.92Show/hide
Query:  STKFSSKPGGFLVFSDALSILELYKLNQKLYLVS---------CIVFENEEFYVYFINFGYVLRKLWVLEVRISNLENLELWVVMPRGNRPSLQTGELDK
        ST FSSKPGGFLVFSDALSILE++K NQKLYL+          C+   + +F++ ++   +   +LWVLEVRISNLENLE    MPRGNR SLQT E+DK
Subjt:  STKFSSKPGGFLVFSDALSILELYKLNQKLYLVS---------CIVFENEEFYVYFINFGYVLRKLWVLEVRISNLENLELWVVMPRGNRPSLQTGELDK

Query:  TIIFPLSTLSVLRDNDAVVSAGRASLRQRRWEC-IGRILG--------LVEIELPAPNALPTSAESSRSNSSTWLELLFYKPSDVRAASSVCWEGFRGFL
        T+IFPLSTLSVL DNDAVVSAG+A LRQRRWEC  G            LVEIELP P+ LPTSAESSRSNSSTWLE L+++   V     V  +  R   
Subjt:  TIIFPLSTLSVLRDNDAVVSAGRASLRQRRWEC-IGRILG--------LVEIELPAPNALPTSAESSRSNSSTWLELLFYKPSDVRAASSVCWEGFRGFL

Query:  CVVFHVEYSISKIGSAEIVRGDDVCWLHAFFRAKTAGGPGGGVTSRLIYSIRASKMHIL
        C+++          SA IVRGDDVCWLHA FRAKTAGGPGGGVT+   Y  + S  H+L
Subjt:  CVVFHVEYSISKIGSAEIVRGDDVCWLHAFFRAKTAGGPGGGVTSRLIYSIRASKMHIL

TYK07530.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.0e-6459.07Show/hide
Query:  MQSQPLQNLGATANLWLFYSSTKFSSKPGGFLVFSDALSILELYKLNQKLYLVSCIVFENEEFYVYFINFGYVLRKLWVLEVRISNLENLELWVVMPRGN
        MQSQPLQNLGAT NLWLFYSST+F S+PG FLVFSDALSILE+++ N KLYL                        LWVLEVRISNLENLE    MPRGN
Subjt:  MQSQPLQNLGATANLWLFYSSTKFSSKPGGFLVFSDALSILELYKLNQKLYLVSCIVFENEEFYVYFINFGYVLRKLWVLEVRISNLENLELWVVMPRGN

Query:  RPSLQTGELDKTIIFPLSTLSVLRDNDAVVSAGRASLRQRRWECIGRILGLVEIELPAPNALPTSAESSRSNSSTWLEL------------LFYKPSDVR
        RPSLQTGELDKT+IFPLSTLSV  DNDAV                      VEIELP  +ALPTSAES  SNSSTWLEL            LFYKPSDVR
Subjt:  RPSLQTGELDKTIIFPLSTLSVLRDNDAVVSAGRASLRQRRWECIGRILGLVEIELPAPNALPTSAESSRSNSSTWLEL------------LFYKPSDVR

Query:  AASSVCWEGFRGFLCVVFHVEYSISKIGSAEIVRGDDVCWLHAFFRAKTAGGPGGGVTS
        AAS VCWE                   GSA IVRGDDVCWLHA F+AKT GGP GGVT+
Subjt:  AASSVCWEGFRGFLCVVFHVEYSISKIGSAEIVRGDDVCWLHAFFRAKTAGGPGGGVTS

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase4.6e-6257.92Show/hide
Query:  STKFSSKPGGFLVFSDALSILELYKLNQKLYLVS---------CIVFENEEFYVYFINFGYVLRKLWVLEVRISNLENLELWVVMPRGNRPSLQTGELDK
        ST FSSKPGGFLVFSDALSILE++K NQKLYL+          C+   + +F++ ++   +   +LWVLEVRISNLENLE    MPRGNR SLQT E+DK
Subjt:  STKFSSKPGGFLVFSDALSILELYKLNQKLYLVS---------CIVFENEEFYVYFINFGYVLRKLWVLEVRISNLENLELWVVMPRGNRPSLQTGELDK

Query:  TIIFPLSTLSVLRDNDAVVSAGRASLRQRRWEC-IGRILG--------LVEIELPAPNALPTSAESSRSNSSTWLELLFYKPSDVRAASSVCWEGFRGFL
        T+IFPLSTLSVL DNDAVVSAG+A LRQRRWEC  G            LVEIELP P+ LPTSAESSRSNSSTWLE L+++   V     V  +  R   
Subjt:  TIIFPLSTLSVLRDNDAVVSAGRASLRQRRWEC-IGRILG--------LVEIELPAPNALPTSAESSRSNSSTWLELLFYKPSDVRAASSVCWEGFRGFL

Query:  CVVFHVEYSISKIGSAEIVRGDDVCWLHAFFRAKTAGGPGGGVTSRLIYSIRASKMHIL
        C+++          SA IVRGDDVCWLHA FRAKTAGGPGGGVT+   Y  + S  H+L
Subjt:  CVVFHVEYSISKIGSAEIVRGDDVCWLHAFFRAKTAGGPGGGVTSRLIYSIRASKMHIL

A0A5A7UFD2 Uncharacterized protein3.4e-7385.08Show/hide
Query:  MQSQPLQNLGATANLWLFYSSTKFSSKPGGFLVFSDALSILELYKLNQKLYLVSCIVFENEEFYVYFINFGYVLRKLWVLEVRISNLENLELWVVMPRGN
        MQSQPLQNLGATANLWLFYSSTKFSSKPGGFLVFSDALSILELYKLNQKLYLVSCIVFENEEFYVYFINFGYVLRKLWVLEVRISNLENLEL    PRGN
Subjt:  MQSQPLQNLGATANLWLFYSSTKFSSKPGGFLVFSDALSILELYKLNQKLYLVSCIVFENEEFYVYFINFGYVLRKLWVLEVRISNLENLELWVVMPRGN

Query:  RPSLQTGELDKTIIFPLSTLSVLRDNDAVVSAGRASLRQRRWECIGRILGLVEIELPAPNALPTSAESSRSNSSTWLELLF
        RPSLQTGELDKTIIFPLSTLSVLRDNDAV                      VEIELPAPNALPTSAESSRSNSSTWLEL F
Subjt:  RPSLQTGELDKTIIFPLSTLSVLRDNDAVVSAGRASLRQRRWECIGRILGLVEIELPAPNALPTSAESSRSNSSTWLELLF

A0A5A7VIY9 Uncharacterized protein2.5e-6056.93Show/hide
Query:  MQSQPLQNLGATANLWLFYSSTKFSSKPGGFLVFSDALSILELYKLNQKLYLVS---------CIVFENEEFYVYFINFGYVLRKLWVLEVRISNLENLE
        MQSQPLQNLGAT NL      T+ SSKPGGFLVFSDALSILE++K NQKLYL+          C+   + +F+  ++   +    L VLEVRISNLENLE
Subjt:  MQSQPLQNLGATANLWLFYSSTKFSSKPGGFLVFSDALSILELYKLNQKLYLVS---------CIVFENEEFYVYFINFGYVLRKLWVLEVRISNLENLE

Query:  LWVVMPRGNRPSLQTGELDKTIIFPLSTLSVLRDNDAVVSAGRASLRQRRWECIGRILGLVEIELPAPNALPTSAESSRSNSSTWLEL---------LFY
            MPRGNR SLQTGELDKT+IF LSTLSVL DN+AV                      VEIELP P+ LPTSAES  SNSSTWLEL         LFY
Subjt:  LWVVMPRGNRPSLQTGELDKTIIFPLSTLSVLRDNDAVVSAGRASLRQRRWECIGRILGLVEIELPAPNALPTSAESSRSNSSTWLEL---------LFY

Query:  KPSDVRAASSVCWEGFRGFLCVVFHVEYSISKIGSAEIVRGDDVCWLHAFFRAKTAGGPGGGVTSRL
        KPSDVRAAS VCWE                   GSA IVRGDDVCWLH  FRAK AGGPGGGVT R+
Subjt:  KPSDVRAASSVCWEGFRGFLCVVFHVEYSISKIGSAEIVRGDDVCWLHAFFRAKTAGGPGGGVTSRL

A0A5D3BTP3 Reverse transcriptase4.6e-6257.92Show/hide
Query:  STKFSSKPGGFLVFSDALSILELYKLNQKLYLVS---------CIVFENEEFYVYFINFGYVLRKLWVLEVRISNLENLELWVVMPRGNRPSLQTGELDK
        ST FSSKPGGFLVFSDALSILE++K NQKLYL+          C+   + +F++ ++   +   +LWVLEVRISNLENLE    MPRGNR SLQT E+DK
Subjt:  STKFSSKPGGFLVFSDALSILELYKLNQKLYLVS---------CIVFENEEFYVYFINFGYVLRKLWVLEVRISNLENLELWVVMPRGNRPSLQTGELDK

Query:  TIIFPLSTLSVLRDNDAVVSAGRASLRQRRWEC-IGRILG--------LVEIELPAPNALPTSAESSRSNSSTWLELLFYKPSDVRAASSVCWEGFRGFL
        T+IFPLSTLSVL DNDAVVSAG+A LRQRRWEC  G            LVEIELP P+ LPTSAESSRSNSSTWLE L+++   V     V  +  R   
Subjt:  TIIFPLSTLSVLRDNDAVVSAGRASLRQRRWEC-IGRILG--------LVEIELPAPNALPTSAESSRSNSSTWLELLFYKPSDVRAASSVCWEGFRGFL

Query:  CVVFHVEYSISKIGSAEIVRGDDVCWLHAFFRAKTAGGPGGGVTSRLIYSIRASKMHIL
        C+++          SA IVRGDDVCWLHA FRAKTAGGPGGGVT+   Y  + S  H+L
Subjt:  CVVFHVEYSISKIGSAEIVRGDDVCWLHAFFRAKTAGGPGGGVTSRLIYSIRASKMHIL

A0A5D3C867 DNA/RNA polymerases superfamily protein9.9e-6559.07Show/hide
Query:  MQSQPLQNLGATANLWLFYSSTKFSSKPGGFLVFSDALSILELYKLNQKLYLVSCIVFENEEFYVYFINFGYVLRKLWVLEVRISNLENLELWVVMPRGN
        MQSQPLQNLGAT NLWLFYSST+F S+PG FLVFSDALSILE+++ N KLYL                        LWVLEVRISNLENLE    MPRGN
Subjt:  MQSQPLQNLGATANLWLFYSSTKFSSKPGGFLVFSDALSILELYKLNQKLYLVSCIVFENEEFYVYFINFGYVLRKLWVLEVRISNLENLELWVVMPRGN

Query:  RPSLQTGELDKTIIFPLSTLSVLRDNDAVVSAGRASLRQRRWECIGRILGLVEIELPAPNALPTSAESSRSNSSTWLEL------------LFYKPSDVR
        RPSLQTGELDKT+IFPLSTLSV  DNDAV                      VEIELP  +ALPTSAES  SNSSTWLEL            LFYKPSDVR
Subjt:  RPSLQTGELDKTIIFPLSTLSVLRDNDAVVSAGRASLRQRRWECIGRILGLVEIELPAPNALPTSAESSRSNSSTWLEL------------LFYKPSDVR

Query:  AASSVCWEGFRGFLCVVFHVEYSISKIGSAEIVRGDDVCWLHAFFRAKTAGGPGGGVTS
        AAS VCWE                   GSA IVRGDDVCWLHA F+AKT GGP GGVT+
Subjt:  AASSVCWEGFRGFLCVVFHVEYSISKIGSAEIVRGDDVCWLHAFFRAKTAGGPGGGVTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAAGCCAGCCATTGCAAAATCTGGGTGCAACTGCCAACCTCTGGTTGTTTTATTCGAGCACAAAATTTTCGAGCAAACCAGGAGGATTTCTGGTGTTCTCTGATGC
TTTGAGTATTCTGGAATTGTACAAGTTGAATCAAAAGCTCTATTTGGTAAGTTGTATAGTGTTCGAAAATGAAGAGTTTTATGTATATTTCATTAATTTTGGATACGTTT
TGAGGAAGTTGTGGGTGTTGGAAGTTAGGATATCGAATCTGGAAAATCTGGAATTGTGGGTTGTAATGCCAAGAGGAAATAGGCCGAGTCTACAAACCGGGGAACTAGAT
AAGACTATTATATTTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCTCACTACGACAAAGACGATGGGAGTGTATTGGGCG
TATCCTTGGACTAGTAGAGATTGAGCTCCCGGCGCCTAATGCACTGCCAACGTCTGCTGAAAGTTCCAGATCAAACTCCAGTACGTGGTTGGAGTTGTTATTTTACAAAC
CAAGTGATGTCAGGGCTGCATCTTCTGTTTGTTGGGAAGGTTTTCGTGGTTTCCTCTGTGTGGTGTTCCATGTTGAATATTCTATATCTAAGATTGGGTCAGCAGAGATC
GTTAGAGGAGACGATGTCTGTTGGCTTCACGCCTTCTTTCGGGCTAAGACAGCAGGTGGTCCGGGAGGGGGTGTGACAAGTCGTCTGATATATTCAATACGAGCTTCCAA
GATGCATATATTAATCATCATCTCACTCTCCATCTCAACAACCGACGTACAGTCACAACAGTTCTCGTCATCACAATATCATGCCATAATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAAAGCCAGCCATTGCAAAATCTGGGTGCAACTGCCAACCTCTGGTTGTTTTATTCGAGCACAAAATTTTCGAGCAAACCAGGAGGATTTCTGGTGTTCTCTGATGC
TTTGAGTATTCTGGAATTGTACAAGTTGAATCAAAAGCTCTATTTGGTAAGTTGTATAGTGTTCGAAAATGAAGAGTTTTATGTATATTTCATTAATTTTGGATACGTTT
TGAGGAAGTTGTGGGTGTTGGAAGTTAGGATATCGAATCTGGAAAATCTGGAATTGTGGGTTGTAATGCCAAGAGGAAATAGGCCGAGTCTACAAACCGGGGAACTAGAT
AAGACTATTATATTTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCTCACTACGACAAAGACGATGGGAGTGTATTGGGCG
TATCCTTGGACTAGTAGAGATTGAGCTCCCGGCGCCTAATGCACTGCCAACGTCTGCTGAAAGTTCCAGATCAAACTCCAGTACGTGGTTGGAGTTGTTATTTTACAAAC
CAAGTGATGTCAGGGCTGCATCTTCTGTTTGTTGGGAAGGTTTTCGTGGTTTCCTCTGTGTGGTGTTCCATGTTGAATATTCTATATCTAAGATTGGGTCAGCAGAGATC
GTTAGAGGAGACGATGTCTGTTGGCTTCACGCCTTCTTTCGGGCTAAGACAGCAGGTGGTCCGGGAGGGGGTGTGACAAGTCGTCTGATATATTCAATACGAGCTTCCAA
GATGCATATATTAATCATCATCTCACTCTCCATCTCAACAACCGACGTACAGTCACAACAGTTCTCGTCATCACAATATCATGCCATAATGTAA
Protein sequenceShow/hide protein sequence
MQSQPLQNLGATANLWLFYSSTKFSSKPGGFLVFSDALSILELYKLNQKLYLVSCIVFENEEFYVYFINFGYVLRKLWVLEVRISNLENLELWVVMPRGNRPSLQTGELD
KTIIFPLSTLSVLRDNDAVVSAGRASLRQRRWECIGRILGLVEIELPAPNALPTSAESSRSNSSTWLELLFYKPSDVRAASSVCWEGFRGFLCVVFHVEYSISKIGSAEI
VRGDDVCWLHAFFRAKTAGGPGGGVTSRLIYSIRASKMHILIIISLSISTTDVQSQQFSSSQYHAIM