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MELO3C033267 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C033267
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionGag-pol polyprotein
Genome locationchr08:15016627..15017932
RNA-Seq ExpressionMELO3C033267
SyntenyMELO3C033267
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053200.1 gag-pol polyprotein [Cucumis melo var. makuwa]4.6e-4690.6Show/hide
Query:  EQSEDAPNVITSSPSPVHHRPYRLPSEKVQGEAISRLQESLRSEAVLEVRKSAAPVSPAVHAHRASEATVLDMDSDDQDNVLLICLLKKPSEPVTAERLP
        EQSEDAPNVITSSPSPVHH           GEAISRLQESLRSEAVLEVRKSAAPVSPAVHAHRASEATVLDMDSDDQDNVLLICLLKKPSEPVTAERLP
Subjt:  EQSEDAPNVITSSPSPVHHRPYRLPSEKVQGEAISRLQESLRSEAVLEVRKSAAPVSPAVHAHRASEATVLDMDSDDQDNVLLICLLKKPSEPVTAERLP

Query:  SDPPSAIHFQESSSIEG
        SDPPSAIHFQESSSIEG
Subjt:  SDPPSAIHFQESSSIEG

KAA0056211.1 uncharacterized protein E6C27_scaffold85G00030 [Cucumis melo var. makuwa]2.1e-4373.24Show/hide
Query:  MVNTHKGPYVPEQSEDAPNVITSSPSPVHH--------------RPYRLPSEKVQGEAISRLQESLRSEAVLEVRKSAAPVSPAVHAHRASEATVLDMDS
        MVNTHK  YVP+QSEDAPN ITSSPSPVHH              + YRLP EKVQGEA S+LQESLRS+AV EV +SAAPVSPAVHA+RASEATV DMDS
Subjt:  MVNTHKGPYVPEQSEDAPNVITSSPSPVHH--------------RPYRLPSEKVQGEAISRLQESLRSEAVLEVRKSAAPVSPAVHAHRASEATVLDMDS

Query:  DDQDNVLLICLLKKPSEPVTAERLPSDPPSAIHFQESSSIEG
        D QDNV LI LL KPS+PVTAERLPSDPP +IH QESSS EG
Subjt:  DDQDNVLLICLLKKPSEPVTAERLPSDPPSAIHFQESSSIEG

TYK00141.1 gag-pol polyprotein [Cucumis melo var. makuwa]4.6e-4690.6Show/hide
Query:  EQSEDAPNVITSSPSPVHHRPYRLPSEKVQGEAISRLQESLRSEAVLEVRKSAAPVSPAVHAHRASEATVLDMDSDDQDNVLLICLLKKPSEPVTAERLP
        EQSEDAPNVITSSPSPVHH           GEAISRLQESLRSEAVLEVRKSAAPVSPAVHAHRASEATVLDMDSDDQDNVLLICLLKKPSEPVTAERLP
Subjt:  EQSEDAPNVITSSPSPVHHRPYRLPSEKVQGEAISRLQESLRSEAVLEVRKSAAPVSPAVHAHRASEATVLDMDSDDQDNVLLICLLKKPSEPVTAERLP

Query:  SDPPSAIHFQESSSIEG
        SDPPSAIHFQESSSIEG
Subjt:  SDPPSAIHFQESSSIEG

TYK11858.1 envelope-like protein [Cucumis melo var. makuwa]2.5e-4473.24Show/hide
Query:  MVNTHKGPYVPEQSEDAPNVITSSPSPVHH--------------RPYRLPSEKVQGEAISRLQESLRSEAVLEVRKSAAPVSPAVHAHRASEATVLDMDS
        MVNT KG YVP+QSEDAPNVITSSP PV H              +PYR+PSEKVQG+A SRLQESLRSEA+ EV +SAAP+S AVHAHRASEATV +MDS
Subjt:  MVNTHKGPYVPEQSEDAPNVITSSPSPVHH--------------RPYRLPSEKVQGEAISRLQESLRSEAVLEVRKSAAPVSPAVHAHRASEATVLDMDS

Query:  DDQDNVLLICLLKKPSEPVTAERLPSDPPSAIHFQESSSIEG
        DDQDNV LI LLKKPS PVTAERLPSDPP +IH QESSS EG
Subjt:  DDQDNVLLICLLKKPSEPVTAERLPSDPPSAIHFQESSSIEG

XP_008465030.1 PREDICTED: uncharacterized protein LOC103502746 [Cucumis melo]2.5e-4473.94Show/hide
Query:  MVNTHKGPYVPEQSEDAPNVITSSPSPVHH--------------RPYRLPSEKVQGEAISRLQESLRSEAVLEVRKSAAPVSPAVHAHRASEATVLDMDS
        MVNTHKG YVP+QSEDAPN ITSSPSPVHH              + YRLP EKVQGEA S+LQESLRS+AV EV +SAAPVSPAVHA+RASEATV DMDS
Subjt:  MVNTHKGPYVPEQSEDAPNVITSSPSPVHH--------------RPYRLPSEKVQGEAISRLQESLRSEAVLEVRKSAAPVSPAVHAHRASEATVLDMDS

Query:  DDQDNVLLICLLKKPSEPVTAERLPSDPPSAIHFQESSSIEG
        D QDNV LI LL KPS+PVTAERLPSDPP +IH QESSS EG
Subjt:  DDQDNVLLICLLKKPSEPVTAERLPSDPPSAIHFQESSSIEG

TrEMBL top hitse value%identityAlignment
A0A1S3CMY0 uncharacterized protein LOC1035027461.2e-4473.94Show/hide
Query:  MVNTHKGPYVPEQSEDAPNVITSSPSPVHH--------------RPYRLPSEKVQGEAISRLQESLRSEAVLEVRKSAAPVSPAVHAHRASEATVLDMDS
        MVNTHKG YVP+QSEDAPN ITSSPSPVHH              + YRLP EKVQGEA S+LQESLRS+AV EV +SAAPVSPAVHA+RASEATV DMDS
Subjt:  MVNTHKGPYVPEQSEDAPNVITSSPSPVHH--------------RPYRLPSEKVQGEAISRLQESLRSEAVLEVRKSAAPVSPAVHAHRASEATVLDMDS

Query:  DDQDNVLLICLLKKPSEPVTAERLPSDPPSAIHFQESSSIEG
        D QDNV LI LL KPS+PVTAERLPSDPP +IH QESSS EG
Subjt:  DDQDNVLLICLLKKPSEPVTAERLPSDPPSAIHFQESSSIEG

A0A5A7UDB5 Gag-pol polyprotein2.2e-4690.6Show/hide
Query:  EQSEDAPNVITSSPSPVHHRPYRLPSEKVQGEAISRLQESLRSEAVLEVRKSAAPVSPAVHAHRASEATVLDMDSDDQDNVLLICLLKKPSEPVTAERLP
        EQSEDAPNVITSSPSPVHH           GEAISRLQESLRSEAVLEVRKSAAPVSPAVHAHRASEATVLDMDSDDQDNVLLICLLKKPSEPVTAERLP
Subjt:  EQSEDAPNVITSSPSPVHHRPYRLPSEKVQGEAISRLQESLRSEAVLEVRKSAAPVSPAVHAHRASEATVLDMDSDDQDNVLLICLLKKPSEPVTAERLP

Query:  SDPPSAIHFQESSSIEG
        SDPPSAIHFQESSSIEG
Subjt:  SDPPSAIHFQESSSIEG

A0A5A7URQ6 Uncharacterized protein1.0e-4373.24Show/hide
Query:  MVNTHKGPYVPEQSEDAPNVITSSPSPVHH--------------RPYRLPSEKVQGEAISRLQESLRSEAVLEVRKSAAPVSPAVHAHRASEATVLDMDS
        MVNTHK  YVP+QSEDAPN ITSSPSPVHH              + YRLP EKVQGEA S+LQESLRS+AV EV +SAAPVSPAVHA+RASEATV DMDS
Subjt:  MVNTHKGPYVPEQSEDAPNVITSSPSPVHH--------------RPYRLPSEKVQGEAISRLQESLRSEAVLEVRKSAAPVSPAVHAHRASEATVLDMDS

Query:  DDQDNVLLICLLKKPSEPVTAERLPSDPPSAIHFQESSSIEG
        D QDNV LI LL KPS+PVTAERLPSDPP +IH QESSS EG
Subjt:  DDQDNVLLICLLKKPSEPVTAERLPSDPPSAIHFQESSSIEG

A0A5D3BJZ7 Gag-pol polyprotein2.2e-4690.6Show/hide
Query:  EQSEDAPNVITSSPSPVHHRPYRLPSEKVQGEAISRLQESLRSEAVLEVRKSAAPVSPAVHAHRASEATVLDMDSDDQDNVLLICLLKKPSEPVTAERLP
        EQSEDAPNVITSSPSPVHH           GEAISRLQESLRSEAVLEVRKSAAPVSPAVHAHRASEATVLDMDSDDQDNVLLICLLKKPSEPVTAERLP
Subjt:  EQSEDAPNVITSSPSPVHHRPYRLPSEKVQGEAISRLQESLRSEAVLEVRKSAAPVSPAVHAHRASEATVLDMDSDDQDNVLLICLLKKPSEPVTAERLP

Query:  SDPPSAIHFQESSSIEG
        SDPPSAIHFQESSSIEG
Subjt:  SDPPSAIHFQESSSIEG

A0A5D3CL24 Envelope-like protein1.2e-4473.24Show/hide
Query:  MVNTHKGPYVPEQSEDAPNVITSSPSPVHH--------------RPYRLPSEKVQGEAISRLQESLRSEAVLEVRKSAAPVSPAVHAHRASEATVLDMDS
        MVNT KG YVP+QSEDAPNVITSSP PV H              +PYR+PSEKVQG+A SRLQESLRSEA+ EV +SAAP+S AVHAHRASEATV +MDS
Subjt:  MVNTHKGPYVPEQSEDAPNVITSSPSPVHH--------------RPYRLPSEKVQGEAISRLQESLRSEAVLEVRKSAAPVSPAVHAHRASEATVLDMDS

Query:  DDQDNVLLICLLKKPSEPVTAERLPSDPPSAIHFQESSSIEG
        DDQDNV LI LLKKPS PVTAERLPSDPP +IH QESSS EG
Subjt:  DDQDNVLLICLLKKPSEPVTAERLPSDPPSAIHFQESSSIEG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAATACTCACAAGGGGCCTTATGTGCCAGAACAGTCTGAAGATGCACCTAATGTCATCACTTCTTCACCTTCTCCAGTACATCATAGACCCTATCGGCTTCCATC
TGAGAAAGTGCAGGGAGAAGCCATCAGTAGGTTGCAGGAGTCATTACGCTCTGAGGCGGTGCTTGAAGTCAGGAAGTCTGCTGCTCCTGTTTCTCCTGCTGTGCATGCAC
ATCGAGCTTCTGAGGCCACTGTATTGGATATGGATTCAGATGATCAGGATAATGTTCTGTTAATCTGTTTGTTGAAGAAACCCTCAGAGCCAGTTACAGCCGAGAGGCTC
CCTTCTGATCCTCCGAGTGCCATTCACTTTCAAGAGAGCTCATCAATCGAAGGGAGACCCTCGACACTCACCAGCTATACCTTTACGTCATTCTCCCTCTGTTTATCCTT
CTCGATCGAAACTACCTACTTCGCAACCGGATGCGGTGCCTGTACATTCCTAAAATCGCTACTGCTGTACGTGAGGAACAGACTGTTGGTTCTCAAAATGATGATCAGTG
TACTTCTTTTAACCAGACTGAGATACCTCTTGAAGACATTCCTCCTCCTACTGATGATCCCATTGTACCATCTTCTGAAAGAAGGCCAGAATCTCCTAAAGGTCATAAAC
CCCCGAAAAGAAAAACTCAACAGGCTAGGAGAAATGTTACCACAAAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGAATACTCACAAGGGGCCTTATGTGCCAGAACAGTCTGAAGATGCACCTAATGTCATCACTTCTTCACCTTCTCCAGTACATCATAGACCCTATCGGCTTCCATC
TGAGAAAGTGCAGGGAGAAGCCATCAGTAGGTTGCAGGAGTCATTACGCTCTGAGGCGGTGCTTGAAGTCAGGAAGTCTGCTGCTCCTGTTTCTCCTGCTGTGCATGCAC
ATCGAGCTTCTGAGGCCACTGTATTGGATATGGATTCAGATGATCAGGATAATGTTCTGTTAATCTGTTTGTTGAAGAAACCCTCAGAGCCAGTTACAGCCGAGAGGCTC
CCTTCTGATCCTCCGAGTGCCATTCACTTTCAAGAGAGCTCATCAATCGAAGGGAGACCCTCGACACTCACCAGCTATACCTTTACGTCATTCTCCCTCTGTTTATCCTT
CTCGATCGAAACTACCTACTTCGCAACCGGATGCGGTGCCTGTACATTCCTAAAATCGCTACTGCTGTACGTGAGGAACAGACTGTTGGTTCTCAAAATGATGATCAGTG
TACTTCTTTTAACCAGACTGAGATACCTCTTGAAGACATTCCTCCTCCTACTGATGATCCCATTGTACCATCTTCTGAAAGAAGGCCAGAATCTCCTAAAGGTCATAAAC
CCCCGAAAAGAAAAACTCAACAGGCTAGGAGAAATGTTACCACAAAAATAGGCAGAAAGAAAATTCCTGCGAATGTTCCATCCGTTCCAATTGATGGAATTTTGTTTCAC
CACGAGGAAAGTCTAATTAGAGAATTTATCATCAATCTGTCTGATGAGTTTAATGATCCAAGTAGTGCTGACTATCAGACGGTGCACATTAGAGGGTTAAAATTTGTGAT
TTCACCTGCTGTGATAAATGGTTTTCTTGGAAATACTGTTGATATGGACTGCTCTCCATTATGTCCTACTACTGAAGTTCTAGCTACTGTCTTATTTGGAGGGACCTTGT
CCACATGGCCTGTGAATGGAATCCCTGCAGCTGCTCTCAGCATCAAGTATGCCATTCTGCACAAGATTGGCATTGCCAATTGGTTTCCTTCCTCACATGCCTAA
Protein sequenceShow/hide protein sequence
MVNTHKGPYVPEQSEDAPNVITSSPSPVHHRPYRLPSEKVQGEAISRLQESLRSEAVLEVRKSAAPVSPAVHAHRASEATVLDMDSDDQDNVLLICLLKKPSEPVTAERL
PSDPPSAIHFQESSSIEGRPSTLTSYTFTSFSLCLSFSIETTYFATGCGACTFLKSLLLYVRNRLLVLKMMISVLLLTRLRYLLKTFLLLLMIPLYHLLKEGQNLLKVIN
PRKEKLNRLGEMLPQK