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MELO3C033307 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C033307
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRNA-directed DNA polymerase-like protein
Genome locationchr08:17472662..17476558
RNA-Seq ExpressionMELO3C033307
SyntenyMELO3C033307
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042134.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.5e-0947.54Show/hide
Query:  MKKTGQLVFTRNQE------------------------SVPVELGSLFGMMIYEIFINYMTEILSLRLEITVRTL---------VSLGLLVKSVNFKVYK
        MKKTGQLVFTRNQE                        S   + GS  G ++  I + Y   I  + L+I + TL         VSLG LVKSVN +V K
Subjt:  MKKTGQLVFTRNQE------------------------SVPVELGSLFGMMIYEIFINYMTEILSLRLEITVRTL---------VSLGLLVKSVNFKVYK

Query:  SVVRRLHAIFRSKVAGSPGGGV
        SVVR+LHAIFRSKVAGSPGGGV
Subjt:  SVVRRLHAIFRSKVAGSPGGGV

KAA0042349.1 uncharacterized protein E6C27_scaffold795G00510 [Cucumis melo var. makuwa]3.2e-0778.72Show/hide
Query:  VRTLVSLGLLVKSVNF-----KVYKSVVRRLHAIFRSKVAGSPGGGV
        +R+ VSLGLLVKSVNF     +V KSVVRRLHAIFRSKVAGSPGGGV
Subjt:  VRTLVSLGLLVKSVNF-----KVYKSVVRRLHAIFRSKVAGSPGGGV

KAA0056695.1 hypothetical protein E6C27_scaffold73G00230 [Cucumis melo var. makuwa]1.4e-1057.61Show/hide
Query:  MTEILSLRLEITVRTL----------------------------------VSLGLLVKSVNFKVYKSVVRRLHAIFRSKVAGSPGGGVIVLF
        MTEILSLRLEITV TL                                  VSLGLLVKSVNFKV KSVVRRLHAIFRSKVAGSPGGGV + F
Subjt:  MTEILSLRLEITVRTL----------------------------------VSLGLLVKSVNFKVYKSVVRRLHAIFRSKVAGSPGGGVIVLF

TYK01066.1 RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa]3.1e-1070.91Show/hide
Query:  QVVIASFGKKKCYFEAQTREEVVSDLSFTLSTIVYGTSIACACERRSYQLNNRVW
        + V  SF KKKC FEAQTRE  VS LSFTLS I YG  IACA ERRSYQLN+ VW
Subjt:  QVVIASFGKKKCYFEAQTREEVVSDLSFTLSTIVYGTSIACACERRSYQLNNRVW

TYK31055.1 gag/pol protein [Cucumis melo var. makuwa]3.3e-0449.37Show/hide
Query:  VSLGLLVKSVNF-----KVYKSVVRRLHAIFRSKVAGSPGGGV----IVLFWKNTMDAVRSVVSTNDVILNRSCRDMEV
        VSLGLLVKSVNF     +V KSVV  LHAIFRSKVAGSP GGV    +V+   +  D++    + NDV  ++  + M++
Subjt:  VSLGLLVKSVNF-----KVYKSVVRRLHAIFRSKVAGSPGGGV----IVLFWKNTMDAVRSVVSTNDVILNRSCRDMEV

TrEMBL top hitse value%identityAlignment
A0A5A7TFC5 Reverse transcriptase2.2e-0947.54Show/hide
Query:  MKKTGQLVFTRNQE------------------------SVPVELGSLFGMMIYEIFINYMTEILSLRLEITVRTL---------VSLGLLVKSVNFKVYK
        MKKTGQLVFTRNQE                        S   + GS  G ++  I + Y   I  + L+I + TL         VSLG LVKSVN +V K
Subjt:  MKKTGQLVFTRNQE------------------------SVPVELGSLFGMMIYEIFINYMTEILSLRLEITVRTL---------VSLGLLVKSVNFKVYK

Query:  SVVRRLHAIFRSKVAGSPGGGV
        SVVR+LHAIFRSKVAGSPGGGV
Subjt:  SVVRRLHAIFRSKVAGSPGGGV

A0A5A7TLX3 Retrotrans_gag domain-containing protein1.5e-0778.72Show/hide
Query:  VRTLVSLGLLVKSVNF-----KVYKSVVRRLHAIFRSKVAGSPGGGV
        +R+ VSLGLLVKSVNF     +V KSVVRRLHAIFRSKVAGSPGGGV
Subjt:  VRTLVSLGLLVKSVNF-----KVYKSVVRRLHAIFRSKVAGSPGGGV

A0A5A7UT45 Uncharacterized protein6.7e-1157.61Show/hide
Query:  MTEILSLRLEITVRTL----------------------------------VSLGLLVKSVNFKVYKSVVRRLHAIFRSKVAGSPGGGVIVLF
        MTEILSLRLEITV TL                                  VSLGLLVKSVNFKV KSVVRRLHAIFRSKVAGSPGGGV + F
Subjt:  MTEILSLRLEITVRTL----------------------------------VSLGLLVKSVNFKVYKSVVRRLHAIFRSKVAGSPGGGVIVLF

A0A5D3BS37 RNA-directed DNA polymerase-like protein1.5e-1070.91Show/hide
Query:  QVVIASFGKKKCYFEAQTREEVVSDLSFTLSTIVYGTSIACACERRSYQLNNRVW
        + V  SF KKKC FEAQTRE  VS LSFTLS I YG  IACA ERRSYQLN+ VW
Subjt:  QVVIASFGKKKCYFEAQTREEVVSDLSFTLSTIVYGTSIACACERRSYQLNNRVW

A0A5D3E6W6 Gag/pol protein1.6e-0449.37Show/hide
Query:  VSLGLLVKSVNF-----KVYKSVVRRLHAIFRSKVAGSPGGGV----IVLFWKNTMDAVRSVVSTNDVILNRSCRDMEV
        VSLGLLVKSVNF     +V KSVV  LHAIFRSKVAGSP GGV    +V+   +  D++    + NDV  ++  + M++
Subjt:  VSLGLLVKSVNF-----KVYKSVVRRLHAIFRSKVAGSPGGGV----IVLFWKNTMDAVRSVVSTNDVILNRSCRDMEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAAACAGGGCAGTTGGTTTTCACTCGAAATCAGGAGAGTGTACCTGTGGAGTTAGGATCTCTATTTGGTATGATGATTTATGAAATTTTCATTAACTACATGAC
TGAGATCTTGAGCCTGAGGCTAGAGATTACCGTGCGCACACTGGTGTCCTTAGGTTTACTCGTGAAATCAGTAAATTTTAAGGTATATAAAAGCGTTGTTCGTCGGCTTC
ACGCCATCTTTCGGTCTAAGGTAGCAGGTAGTCCGGGAGGGGGTGTGATAGTCTTATTCTGGAAAAACACTATGGATGCGGTCCGCTCCGTAGTTAGTACAAACGATGTA
ATCCTGAATCGTTCATGTAGGGATATGGAAGTGGGGGCGTCCTATAATGAGAAGATGATGATGAAAATCTCATCAGTAGAGAAGAAGTTTTGGAACGAAGAAGAAGTTGA
GAACTACAAAGGTAAGTTCATCGTTTACCTTCTATATTCTTCGTTTAGGTCTATCGTTCAGGTTGTAATTGCTTCATTCGGGAAGAAGAAGTGCTATTTTGAAGCTCAGA
CCCGAGAAGAAGTTGTTTCAGACCTATCGTTCACCCTCTCAACGATCGTGTATGGTACGAGCATCGCTTGTGCCTGTGAACGTCGCTCTTACCAGCTAAACAATCGCGTA
TGGTACGTGTATTGTTTGTATAAGATCACAGCGTTTGCCAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAAACAGGGCAGTTGGTTTTCACTCGAAATCAGGAGAGTGTACCTGTGGAGTTAGGATCTCTATTTGGTATGATGATTTATGAAATTTTCATTAACTACATGAC
TGAGATCTTGAGCCTGAGGCTAGAGATTACCGTGCGCACACTGGTGTCCTTAGGTTTACTCGTGAAATCAGTAAATTTTAAGGTATATAAAAGCGTTGTTCGTCGGCTTC
ACGCCATCTTTCGGTCTAAGGTAGCAGGTAGTCCGGGAGGGGGTGTGATAGTCTTATTCTGGAAAAACACTATGGATGCGGTCCGCTCCGTAGTTAGTACAAACGATGTA
ATCCTGAATCGTTCATGTAGGGATATGGAAGTGGGGGCGTCCTATAATGAGAAGATGATGATGAAAATCTCATCAGTAGAGAAGAAGTTTTGGAACGAAGAAGAAGTTGA
GAACTACAAAGGTAAGTTCATCGTTTACCTTCTATATTCTTCGTTTAGGTCTATCGTTCAGGTTGTAATTGCTTCATTCGGGAAGAAGAAGTGCTATTTTGAAGCTCAGA
CCCGAGAAGAAGTTGTTTCAGACCTATCGTTCACCCTCTCAACGATCGTGTATGGTACGAGCATCGCTTGTGCCTGTGAACGTCGCTCTTACCAGCTAAACAATCGCGTA
TGGTACGTGTATTGTTTGTATAAGATCACAGCGTTTGCCAGCTAA
Protein sequenceShow/hide protein sequence
MKKTGQLVFTRNQESVPVELGSLFGMMIYEIFINYMTEILSLRLEITVRTLVSLGLLVKSVNFKVYKSVVRRLHAIFRSKVAGSPGGGVIVLFWKNTMDAVRSVVSTNDV
ILNRSCRDMEVGASYNEKMMMKISSVEKKFWNEEEVENYKGKFIVYLLYSSFRSIVQVVIASFGKKKCYFEAQTREEVVSDLSFTLSTIVYGTSIACACERRSYQLNNRV
WYVYCLYKITAFAS