; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C033309 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C033309
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr08:17654998..17659555
RNA-Seq ExpressionMELO3C033309
SyntenyMELO3C033309
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035073.1 uncharacterized protein E6C27_scaffold57G001380 [Cucumis melo var. makuwa]9.1e-0982Show/hide
Query:  IDCLSLLKLQYRLPVSLGLLVKS----SRQIQVQKSVVHQLHAIFRSKVA
        +DCLSL KL YRLPVSLGLLVKS    SRQIQVQKSVV +LHAIFRSKVA
Subjt:  IDCLSLLKLQYRLPVSLGLLVKS----SRQIQVQKSVVHQLHAIFRSKVA

KAA0037607.1 uncharacterized protein E6C27_scaffold277G002620 [Cucumis melo var. makuwa]4.1e-0949.57Show/hide
Query:  MIEILSLRLEITMCTL-RSSSRCLIDCLSLLKLQYRLPVSLGLLVKS---------------------------------------------SRQIQVQK
        M EILSLRLEIT+ TL      CLIDCLSL KL YRLPVSLGLLVKS                                             SRQIQVQK
Subjt:  MIEILSLRLEITMCTL-RSSSRCLIDCLSLLKLQYRLPVSLGLLVKS---------------------------------------------SRQIQVQK

Query:  SVVHQLHAIFRSKVA
        SVV +LHAIFRSKVA
Subjt:  SVVHQLHAIFRSKVA

KAA0042349.1 uncharacterized protein E6C27_scaffold795G00510 [Cucumis melo var. makuwa]1.1e-0678.72Show/hide
Query:  RLPVSLGLLVKS----SRQIQVQKSVVHQLHAIFRSKVASTPGGGVT
        R  VSLGLLVKS    SRQIQVQKSVV +LHAIFRSKVA +PGGGVT
Subjt:  RLPVSLGLLVKS----SRQIQVQKSVVHQLHAIFRSKVASTPGGGVT

KAA0056695.1 hypothetical protein E6C27_scaffold73G00230 [Cucumis melo var. makuwa]6.5e-0754.17Show/hide
Query:  MIEILSLRLEITMCTLRSSSRCLID-------------CLSLLKLQYRL-----PVSLGLLVKSSRQIQVQKSVVHQLHAIFRSKVASTPGGGVTL
        M EILSLRLEIT+CTL      LID              LS+    + L      VSLGLLVKS    +VQKSVV +LHAIFRSKVA +PGGGVTL
Subjt:  MIEILSLRLEITMCTLRSSSRCLID-------------CLSLLKLQYRL-----PVSLGLLVKSSRQIQVQKSVVHQLHAIFRSKVASTPGGGVTL

TYK31055.1 gag/pol protein [Cucumis melo var. makuwa]1.1e-0667.8Show/hide
Query:  VSLGLLVKS----SRQIQVQKSVVHQLHAIFRSKVASTPGGGVTLLD--IDDDGLDELL
        VSLGLLVKS    SRQIQVQKSVVH LHAIFRSKVA +P GGVT     I DD +++ L
Subjt:  VSLGLLVKS----SRQIQVQKSVVHQLHAIFRSKVASTPGGGVTLLD--IDDDGLDELL

TrEMBL top hitse value%identityAlignment
A0A5A7SWQ7 Gag/pol protein5.4e-0767.8Show/hide
Query:  VSLGLLVKS----SRQIQVQKSVVHQLHAIFRSKVASTPGGGVTLLD--IDDDGLDELL
        VSLGLLVKS    SRQIQVQKSVVH LHAIFRSKVA +P GGVT     I DD +++ L
Subjt:  VSLGLLVKS----SRQIQVQKSVVHQLHAIFRSKVASTPGGGVTLLD--IDDDGLDELL

A0A5A7SX02 CCHC-type domain-containing protein4.4e-0982Show/hide
Query:  IDCLSLLKLQYRLPVSLGLLVKS----SRQIQVQKSVVHQLHAIFRSKVA
        +DCLSL KL YRLPVSLGLLVKS    SRQIQVQKSVV +LHAIFRSKVA
Subjt:  IDCLSLLKLQYRLPVSLGLLVKS----SRQIQVQKSVVHQLHAIFRSKVA

A0A5A7T7T0 Retrotrans_gag domain-containing protein2.0e-0949.57Show/hide
Query:  MIEILSLRLEITMCTL-RSSSRCLIDCLSLLKLQYRLPVSLGLLVKS---------------------------------------------SRQIQVQK
        M EILSLRLEIT+ TL      CLIDCLSL KL YRLPVSLGLLVKS                                             SRQIQVQK
Subjt:  MIEILSLRLEITMCTL-RSSSRCLIDCLSLLKLQYRLPVSLGLLVKS---------------------------------------------SRQIQVQK

Query:  SVVHQLHAIFRSKVA
        SVV +LHAIFRSKVA
Subjt:  SVVHQLHAIFRSKVA

A0A5A7TLX3 Retrotrans_gag domain-containing protein5.4e-0778.72Show/hide
Query:  RLPVSLGLLVKS----SRQIQVQKSVVHQLHAIFRSKVASTPGGGVT
        R  VSLGLLVKS    SRQIQVQKSVV +LHAIFRSKVA +PGGGVT
Subjt:  RLPVSLGLLVKS----SRQIQVQKSVVHQLHAIFRSKVASTPGGGVT

A0A5A7UT45 Uncharacterized protein3.2e-0754.17Show/hide
Query:  MIEILSLRLEITMCTLRSSSRCLID-------------CLSLLKLQYRL-----PVSLGLLVKSSRQIQVQKSVVHQLHAIFRSKVASTPGGGVTL
        M EILSLRLEIT+CTL      LID              LS+    + L      VSLGLLVKS    +VQKSVV +LHAIFRSKVA +PGGGVTL
Subjt:  MIEILSLRLEITMCTLRSSSRCLID-------------CLSLLKLQYRL-----PVSLGLLVKSSRQIQVQKSVVHQLHAIFRSKVASTPGGGVTL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGTTGGAGCAAATTCGGATATTCATTGGGTGCTTTTTGATGAAGAAAACAGGGCAGCTGGTTTTCACTCGAAATCTGGAGGTCTCTGGTTTTTCTTGTATTTAAG
AGTATACCAGTGGAGTTACAATCTCTATTTGGGACAAGTTAAAGAGGTCGTGTGTGCGCGATTCTTGAAGTGGTTCGGTTTCGAGGGCCGAGAAGAATTAAACCGAGCTT
ATAGACCAAGGATGCAGCCCAGGACGATGATTTATGAAATTTTCATTAACTACATGATTGAGATCTTGAGCCTGAGGCTAGAGATTACCATGTGCACACTGAGATCGAGT
TCCCGGTGCCTGATAGACTGCCTTAGTCTGCTGAAGCTCCAGTATCGATTGCCAGTGTCTTTAGGTTTACTCGTGAAATCGAGTCGACAGATACAGGTACAGAAAAGCGT
TGTTCATCAGCTTCACGCCATCTTTCGGTCTAAGGTAGCAAGTACTCCGGGAGGGGGTGTGACATTATTGGACATAGATGATGATGGTCTCGATGAGTTATTGTTTCTAG
CCGACTCTACTATGCTATGCATTGAGCATAACTATTTGGAAGCATGTTTTGAAAACATGACTCGAATATTTCGTTCTACAACCTTCAAGAAGTCCATATTACTTAGAATT
CCTTTGAAAACGACCTTCTTCACTTCCTTTAAACTGTCCTCAAACACCATGTTGGTCACATCACATGTTCACATGGGCTTATCTTGGCGCCTAGGCACTTTGGCCGCCTA
TGGCTGCCTCGCCCAGGGGTGTGCTTGGCCGCCTAGGACGTACCTTTGGAGGCTCTACGTATGCGACTATATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGTTGGAGCAAATTCGGATATTCATTGGGTGCTTTTTGATGAAGAAAACAGGGCAGCTGGTTTTCACTCGAAATCTGGAGGTCTCTGGTTTTTCTTGTATTTAAG
AGTATACCAGTGGAGTTACAATCTCTATTTGGGACAAGTTAAAGAGGTCGTGTGTGCGCGATTCTTGAAGTGGTTCGGTTTCGAGGGCCGAGAAGAATTAAACCGAGCTT
ATAGACCAAGGATGCAGCCCAGGACGATGATTTATGAAATTTTCATTAACTACATGATTGAGATCTTGAGCCTGAGGCTAGAGATTACCATGTGCACACTGAGATCGAGT
TCCCGGTGCCTGATAGACTGCCTTAGTCTGCTGAAGCTCCAGTATCGATTGCCAGTGTCTTTAGGTTTACTCGTGAAATCGAGTCGACAGATACAGGTACAGAAAAGCGT
TGTTCATCAGCTTCACGCCATCTTTCGGTCTAAGGTAGCAAGTACTCCGGGAGGGGGTGTGACATTATTGGACATAGATGATGATGGTCTCGATGAGTTATTGTTTCTAG
CCGACTCTACTATGCTATGCATTGAGCATAACTATTTGGAAGCATGTTTTGAAAACATGACTCGAATATTTCGTTCTACAACCTTCAAGAAGTCCATATTACTTAGAATT
CCTTTGAAAACGACCTTCTTCACTTCCTTTAAACTGTCCTCAAACACCATGTTGGTCACATCACATGTTCACATGGGCTTATCTTGGCGCCTAGGCACTTTGGCCGCCTA
TGGCTGCCTCGCCCAGGGGTGTGCTTGGCCGCCTAGGACGTACCTTTGGAGGCTCTACGTATGCGACTATATTTGA
Protein sequenceShow/hide protein sequence
MKVGANSDIHWVLFDEENRAAGFHSKSGGLWFFLYLRVYQWSYNLYLGQVKEVVCARFLKWFGFEGREELNRAYRPRMQPRTMIYEIFINYMIEILSLRLEITMCTLRSS
SRCLIDCLSLLKLQYRLPVSLGLLVKSSRQIQVQKSVVHQLHAIFRSKVASTPGGGVTLLDIDDDGLDELLFLADSTMLCIEHNYLEACFENMTRIFRSTTFKKSILLRI
PLKTTFFTSFKLSSNTMLVTSHVHMGLSWRLGTLAAYGCLAQGCAWPPRTYLWRLYVCDYI