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MELO3C033355 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C033355
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionMethyl-CpG-binding domain-containing protein 13 isoform X1
Genome locationchr08:20680902..20681984
RNA-Seq ExpressionMELO3C033355
SyntenyMELO3C033355
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033633.1 methyl-CpG-binding domain-containing protein 13 isoform X1 [Cucumis melo var. makuwa]1.5e-1956.41Show/hide
Query:  LSCTKHSLLLKYLKSEKKTVANL---SLISHVVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDSSLGRVGFEENPIRPDP
        L+  K S L    ++++ +  +L    + S VVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPD+SL  +  + +   P  
Subjt:  LSCTKHSLLLKYLKSEKKTVANL---SLISHVVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDSSLGRVGFEENPIRPDP

Query:  ITPLVCISTKNTIRSCV
           L     KN I   V
Subjt:  ITPLVCISTKNTIRSCV

KAA0041223.1 methyl-CpG-binding domain-containing protein 13 isoform X1 [Cucumis melo var. makuwa]4.2e-2296.77Show/hide
Query:  LISHVVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDSSLGRV
        L SHVVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDSSLG V
Subjt:  LISHVVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDSSLGRV

TYK16026.1 methyl-CpG-binding domain-containing protein 13 isoform X1 [Cucumis melo var. makuwa]4.2e-2296.77Show/hide
Query:  LISHVVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDSSLGRV
        L SHVVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDSSLG V
Subjt:  LISHVVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDSSLGRV

TYK22932.1 methyl-CpG-binding domain-containing protein 13 isoform X1 [Cucumis melo var. makuwa]1.5e-1956.41Show/hide
Query:  LSCTKHSLLLKYLKSEKKTVANL---SLISHVVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDSSLGRVGFEENPIRPDP
        L+  K S L    ++++ +  +L    + S VVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPD+SL  +  + +   P  
Subjt:  LSCTKHSLLLKYLKSEKKTVANL---SLISHVVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDSSLGRVGFEENPIRPDP

Query:  ITPLVCISTKNTIRSCV
           L     KN I   V
Subjt:  ITPLVCISTKNTIRSCV

XP_038890398.1 methyl-CpG-binding domain-containing protein 13 isoform X3 [Benincasa hispida]1.4e-1474.6Show/hide
Query:  LISHVVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDSSLGRVG
        L S  VSKKE+L IGKARRQIIWS N SEP EIVDDEAMFP+ATSVGE +P  KPDSS G +G
Subjt:  LISHVVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDSSLGRVG

TrEMBL top hitse value%identityAlignment
A0A0A0L6H4 MBD domain-containing protein3.5e-1460.23Show/hide
Query:  SHVVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDSSLGRVGFEENPIRPDPITPLVCISTKNTIRSCV
        S VVSKKEVLTIGKARRQIIWSEN+SEPSE+VD EAMFP+A SVGE V F  PD SLG +  + +   P     L     KN I   V
Subjt:  SHVVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDSSLGRVGFEENPIRPDPITPLVCISTKNTIRSCV

A0A5A7ST33 Methyl-CpG-binding domain-containing protein 13 isoform X17.2e-2056.41Show/hide
Query:  LSCTKHSLLLKYLKSEKKTVANL---SLISHVVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDSSLGRVGFEENPIRPDP
        L+  K S L    ++++ +  +L    + S VVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPD+SL  +  + +   P  
Subjt:  LSCTKHSLLLKYLKSEKKTVANL---SLISHVVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDSSLGRVGFEENPIRPDP

Query:  ITPLVCISTKNTIRSCV
           L     KN I   V
Subjt:  ITPLVCISTKNTIRSCV

A0A5A7TDJ8 Methyl-CpG-binding domain-containing protein 13 isoform X12.0e-2296.77Show/hide
Query:  LISHVVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDSSLGRV
        L SHVVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDSSLG V
Subjt:  LISHVVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDSSLGRV

A0A5D3D046 Methyl-CpG-binding domain-containing protein 13 isoform X12.0e-2296.77Show/hide
Query:  LISHVVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDSSLGRV
        L SHVVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDSSLG V
Subjt:  LISHVVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDSSLGRV

A0A5D3DH45 Methyl-CpG-binding domain-containing protein 13 isoform X17.2e-2056.41Show/hide
Query:  LSCTKHSLLLKYLKSEKKTVANL---SLISHVVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDSSLGRVGFEENPIRPDP
        L+  K S L    ++++ +  +L    + S VVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPD+SL  +  + +   P  
Subjt:  LSCTKHSLLLKYLKSEKKTVANL---SLISHVVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDSSLGRVGFEENPIRPDP

Query:  ITPLVCISTKNTIRSCV
           L     KN I   V
Subjt:  ITPLVCISTKNTIRSCV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAGCAGTGGAGAATAGGGCTGGGGGGTTGGGTCTCTTTCTCTCTCAAGAATTACACTTTAGAGTTGAGATTTTAAGTTGCACTAAACATTCCCTGCTTCTGAAGTA
TTTGAAATCCGAAAAGAAAACTGTTGCAAACTTAAGTTTGATTTCACATGTTGTCTCCAAGAAAGAGGTGCTAACTATTGGCAAAGCAAGGAGACAGATTATATGGAGTG
AGAACTCATCAGAACCCAGTGAAATAGTGGATGATGAAGCTATGTTTCCAAGTGCTACAAGTGTTGGAGAAATTGTGCCGTTTCAAAAACCTGATTCAAGCCTTGGTCGA
GTCGGTTTTGAAGAAAACCCGATCCGTCCCGACCCAATTACACCCCTAGTTTGTATATCAACCAAGAATACAATAAGGAGTTGTGTACAGGATGGTCTTCTCAAAGGAAG
AGCGTATTTAATTAAGCTTACCACTATCTCGACCCGGGAACCTGTTGGGAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATAGCAGTGGAGAATAGGGCTGGGGGGTTGGGTCTCTTTCTCTCTCAAGAATTACACTTTAGAGTTGAGATTTTAAGTTGCACTAAACATTCCCTGCTTCTGAAGTA
TTTGAAATCCGAAAAGAAAACTGTTGCAAACTTAAGTTTGATTTCACATGTTGTCTCCAAGAAAGAGGTGCTAACTATTGGCAAAGCAAGGAGACAGATTATATGGAGTG
AGAACTCATCAGAACCCAGTGAAATAGTGGATGATGAAGCTATGTTTCCAAGTGCTACAAGTGTTGGAGAAATTGTGCCGTTTCAAAAACCTGATTCAAGCCTTGGTCGA
GTCGGTTTTGAAGAAAACCCGATCCGTCCCGACCCAATTACACCCCTAGTTTGTATATCAACCAAGAATACAATAAGGAGTTGTGTACAGGATGGTCTTCTCAAAGGAAG
AGCGTATTTAATTAAGCTTACCACTATCTCGACCCGGGAACCTGTTGGGAGTTGA
Protein sequenceShow/hide protein sequence
MIAVENRAGGLGLFLSQELHFRVEILSCTKHSLLLKYLKSEKKTVANLSLISHVVSKKEVLTIGKARRQIIWSENSSEPSEIVDDEAMFPSATSVGEIVPFQKPDSSLGR
VGFEENPIRPDPITPLVCISTKNTIRSCVQDGLLKGRAYLIKLTTISTREPVGS