; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C033358 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C033358
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr08:20828761..20829645
RNA-Seq ExpressionMELO3C033358
SyntenyMELO3C033358
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041241.1 retrotransposon protein [Cucumis melo var. makuwa]3.0e-8096.2Show/hide
Query:  MNNNKRLPHTPPDTRHRIRELAYFHMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLYVLAHDVKNRVIQREFVRSGETNWLG
        MNNNKRLPHTPPDTRHRIRELAYFHMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLYVLAHDVKNRVIQREF      NWLG
Subjt:  MNNNKRLPHTPPDTRHRIRELAYFHMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLYVLAHDVKNRVIQREFVRSGETNWLG

Query:  VLDGTYIMVNVRAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSTVDSRILR
        VLDGTYIMVNVRAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSTVDSRILR
Subjt:  VLDGTYIMVNVRAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSTVDSRILR

KAA0047012.1 retrotransposon protein [Cucumis melo var. makuwa]1.6e-7889.94Show/hide
Query:  MNNNKRLPHTPPDTRHRIRELAYFHMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLYVLAHDVKNRVIQREFVRSGET----
        MNNNKRLPHTPPDTRHRIRELAYF MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFL+VLAHDVKNRVIQREFVRSGET    
Subjt:  MNNNKRLPHTPPDTRHRIRELAYFHMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLYVLAHDVKNRVIQREFVRSGET----

Query:  ---NWLGVLDGTYIMVNVRAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSTVDSRILRDALS
           N LG LDGTYI VNV AGDRPTFRTRKGE+ATNVLGVCDTKGDFVYVLAGWEGST DS ILRDA+S
Subjt:  ---NWLGVLDGTYIMVNVRAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSTVDSRILRDALS

KAA0048777.1 retrotransposon protein [Cucumis melo var. makuwa]5.6e-8783.65Show/hide
Query:  MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFHMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF
        MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTP DTRHRIRELAYF MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF
Subjt:  MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFHMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF

Query:  LYVLAHDVKNRVIQREFVRS---GET----------------NWLGVLDGTYIMVNVRAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSTVDS
        L+VLAHDVKNR+IQREF+RS    ET                N LG LDGTYI VNV AGD+PTFRTRKGEIATNVLGVCDTK DFVYVLAGW+GS  DS
Subjt:  LYVLAHDVKNRVIQREFVRS---GET----------------NWLGVLDGTYIMVNVRAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSTVDS

Query:  RILRDALS
        RILRDALS
Subjt:  RILRDALS

KAA0056587.1 retrotransposon protein [Cucumis melo var. makuwa]3.3e-7982.01Show/hide
Query:  MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFHMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF
        MD++TL+GVLTAFT+AQRQ+LLTLE LMN+NK LP TP DTRHRIR+LAYF MIHE D+VCR+STRMD+RTFAILCHLLR V+GLSSTEIVDVEE+VAMF
Subjt:  MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFHMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF

Query:  LYVLAHDVKNRVIQREFVRSGETNWLGVLDGTYIMVNVRAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSTVDSRILRDALS
        L+VLAHDVKNRVIQREFVRS E  W   +  TYI VNV AGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGS  DSRILRD+LS
Subjt:  LYVLAHDVKNRVIQREFVRSGETNWLGVLDGTYIMVNVRAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSTVDSRILRDALS

KAA0058874.1 retrotransposon protein [Cucumis melo var. makuwa]6.6e-8877.63Show/hide
Query:  MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFHMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF
        MDEQTLIGVLTAFT AQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYF MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF
Subjt:  MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFHMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF

Query:  LYVLAHDVKNRVIQREFVRSGET---------------------------------------NWLGVLDGTYIMVNVRAGDRPTFRTRKGEIATNVLGVC
        L+VLAHDVKNRVIQREFVRSGET                                       N LG LDGTYI VNV AGDRPTFRTRKGEI TNVLGVC
Subjt:  LYVLAHDVKNRVIQREFVRSGET---------------------------------------NWLGVLDGTYIMVNVRAGDRPTFRTRKGEIATNVLGVC

Query:  DTKGDFVYVLAGWEGSTVDSRILRDALS
        DTKGDFVYVLAGWEGS  DSRILR+A+S
Subjt:  DTKGDFVYVLAGWEGSTVDSRILRDALS

TrEMBL top hitse value%identityAlignment
A0A5A7THV6 Retrotransposon protein1.4e-8096.2Show/hide
Query:  MNNNKRLPHTPPDTRHRIRELAYFHMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLYVLAHDVKNRVIQREFVRSGETNWLG
        MNNNKRLPHTPPDTRHRIRELAYFHMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLYVLAHDVKNRVIQREF      NWLG
Subjt:  MNNNKRLPHTPPDTRHRIRELAYFHMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLYVLAHDVKNRVIQREFVRSGETNWLG

Query:  VLDGTYIMVNVRAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSTVDSRILR
        VLDGTYIMVNVRAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSTVDSRILR
Subjt:  VLDGTYIMVNVRAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSTVDSRILR

A0A5A7TU76 Retrotransposon protein7.9e-7989.94Show/hide
Query:  MNNNKRLPHTPPDTRHRIRELAYFHMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLYVLAHDVKNRVIQREFVRSGET----
        MNNNKRLPHTPPDTRHRIRELAYF MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFL+VLAHDVKNRVIQREFVRSGET    
Subjt:  MNNNKRLPHTPPDTRHRIRELAYFHMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLYVLAHDVKNRVIQREFVRSGET----

Query:  ---NWLGVLDGTYIMVNVRAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSTVDSRILRDALS
           N LG LDGTYI VNV AGDRPTFRTRKGE+ATNVLGVCDTKGDFVYVLAGWEGST DS ILRDA+S
Subjt:  ---NWLGVLDGTYIMVNVRAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSTVDSRILRDALS

A0A5A7U3B3 Retrotransposon protein2.7e-8783.65Show/hide
Query:  MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFHMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF
        MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTP DTRHRIRELAYF MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF
Subjt:  MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFHMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF

Query:  LYVLAHDVKNRVIQREFVRS---GET----------------NWLGVLDGTYIMVNVRAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSTVDS
        L+VLAHDVKNR+IQREF+RS    ET                N LG LDGTYI VNV AGD+PTFRTRKGEIATNVLGVCDTK DFVYVLAGW+GS  DS
Subjt:  LYVLAHDVKNRVIQREFVRS---GET----------------NWLGVLDGTYIMVNVRAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSTVDS

Query:  RILRDALS
        RILRDALS
Subjt:  RILRDALS

A0A5A7UUT3 Retrotransposon protein3.2e-8877.63Show/hide
Query:  MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFHMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF
        MDEQTLIGVLTAFT AQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYF MIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF
Subjt:  MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFHMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF

Query:  LYVLAHDVKNRVIQREFVRSGET---------------------------------------NWLGVLDGTYIMVNVRAGDRPTFRTRKGEIATNVLGVC
        L+VLAHDVKNRVIQREFVRSGET                                       N LG LDGTYI VNV AGDRPTFRTRKGEI TNVLGVC
Subjt:  LYVLAHDVKNRVIQREFVRSGET---------------------------------------NWLGVLDGTYIMVNVRAGDRPTFRTRKGEIATNVLGVC

Query:  DTKGDFVYVLAGWEGSTVDSRILRDALS
        DTKGDFVYVLAGWEGS  DSRILR+A+S
Subjt:  DTKGDFVYVLAGWEGSTVDSRILRDALS

A0A5D3DLW1 Retrotransposon protein1.6e-7982.01Show/hide
Query:  MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFHMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF
        MD++TL+GVLTAFT+AQRQ+LLTLE LMN+NK LP TP DTRHRIR+LAYF MIHE D+VCR+STRMD+RTFAILCHLLR V+GLSSTEIVDVEE+VAMF
Subjt:  MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFHMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMF

Query:  LYVLAHDVKNRVIQREFVRSGETNWLGVLDGTYIMVNVRAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSTVDSRILRDALS
        L+VLAHDVKNRVIQREFVRS E  W   +  TYI VNV AGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGS  DSRILRD+LS
Subjt:  LYVLAHDVKNRVIQREFVRSGETNWLGVLDGTYIMVNVRAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSTVDSRILRDALS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43722.1 unknown protein1.0e-0923.33Show/hide
Query:  IHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLYVLAHDVKNRVIQREFVRSGET------------------------------
        + +    C Q  RM    F  LC++L+    L  T  + +EE VAMFL +  H+   R +   F R+ ET                              
Subjt:  IHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLYVLAHDVKNRVIQREFVRSGET------------------------------

Query:  ----------------NWLGVLDGTYIMVNVRAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSTVDSRILRDA
                         ++G +DGT++ V V+   +  +  R    + N++ +CD K  F Y+  G  GS  D+ +L+ A
Subjt:  ----------------NWLGVLDGTYIMVNVRAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSTVDSRILRDA

AT5G28950.1 unknown protein7.5e-1346.88Show/hide
Query:  LGVLDGTYIMVNVRAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSTVDSRILRDALS
        +G +D T+I   V     P+FR RKG+I+ N+L  C+   +F+YVL+GWEGS  DS++L DAL+
Subjt:  LGVLDGTYIMVNVRAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSTVDSRILRDALS

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)3.6e-1529.52Show/hide
Query:  CRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLYVLAHDVKNRVIQREFVRSGET-------------------------------------
        C ++ RMD+  F  LC LL+    L  T  + +E  +A+FL+++ H+++ R +Q  F  SGET                                     
Subjt:  CRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLYVLAHDVKNRVIQREFVRSGET-------------------------------------

Query:  NWLGVLDGTYIMVNVRAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSTVDSRILRDALS
        + +GV+D  +I V V   ++  FR   G +  NVL        F YVLAGWEGS  D ++L  AL+
Subjt:  NWLGVLDGTYIMVNVRAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSTVDSRILRDALS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGAACAAACACTTATTGGAGTCCTAACTGCATTCACGTTGGCCCAACGTCAGATTTTACTGACGTTGGAGCTATTAATGAACAACAATAAGCGTCTCCCA
CATACACCGCCCGATACACGCCATAGAATTAGGGAGCTTGCTTACTTTCACATGATACACGAGTCAGATCTTGTGTGTCGGCAGAGCACGCGGATGGATAGGCGA
ACATTCGCAATTCTATGCCATTTACTTAGAAATGTGGCTGGTCTTTCGTCGACTGAGATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGTACGTCCTTGCT
CATGACGTGAAGAACCGCGTCATCCAACGGGAATTTGTACGGTCCGGTGAGACAAATTGGCTTGGTGTGTTAGACGGGACGTACATAATGGTCAACGTTCGCGCA
GGAGATCGGCCTACATTCAGAACGCGTAAGGGGGAAATTGCCACAAACGTTCTGGGGGTGTGTGACACGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGGAA
GGATCCACAGTAGACTCGCGGATCCTACGTGATGCCCTTTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGAACAAACACTTATTGGAGTCCTAACTGCATTCACGTTGGCCCAACGTCAGATTTTACTGACGTTGGAGCTATTAATGAACAACAATAAGCGTCTCCCA
CATACACCGCCCGATACACGCCATAGAATTAGGGAGCTTGCTTACTTTCACATGATACACGAGTCAGATCTTGTGTGTCGGCAGAGCACGCGGATGGATAGGCGA
ACATTCGCAATTCTATGCCATTTACTTAGAAATGTGGCTGGTCTTTCGTCGACTGAGATTGTCGATGTTGAGGAAATGGTAGCAATGTTCTTGTACGTCCTTGCT
CATGACGTGAAGAACCGCGTCATCCAACGGGAATTTGTACGGTCCGGTGAGACAAATTGGCTTGGTGTGTTAGACGGGACGTACATAATGGTCAACGTTCGCGCA
GGAGATCGGCCTACATTCAGAACGCGTAAGGGGGAAATTGCCACAAACGTTCTGGGGGTGTGTGACACGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTGGGAA
GGATCCACAGTAGACTCGCGGATCCTACGTGATGCCCTTTCATGAGAAAATGGACTACAAGTGCCAAAGGGTATATCTTCTTTATAATAAAACACCGCCGCTTCC
TACTTACCTATTTAAAGGTCATAAAGGAACCATTTAATAACAGGATATTATTATCTGTGCG
Protein sequenceShow/hide protein sequence
MDEQTLIGVLTAFTLAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFHMIHESDLVCRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLYVLA
HDVKNRVIQREFVRSGETNWLGVLDGTYIMVNVRAGDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSTVDSRILRDALS