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MELO3C033367 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C033367
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionDown syndrome critical region protein 3 homolog isoform X2
Genome locationchr08:21819929..21821044
RNA-Seq ExpressionMELO3C033367
SyntenyMELO3C033367
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0042147 - retrograde transport, endosome to Golgi (biological process)
GO:0048768 - root hair cell tip growth (biological process)
GO:0005829 - cytosol (cellular component)
GO:0010008 - endosome membrane (cellular component)
GO:0030904 - retromer complex (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137506.1 vacuolar protein sorting-associated protein 26C [Cucumis sativus]6.8e-0984.78Show/hide
Query:  MSTLCSLSGLITGELIVETFAVPINSIDIHLCPVEFVILGERIIIE
        MSTLCSLS  +TGELIVET AVPINSIDIHLC VE VILGERII E
Subjt:  MSTLCSLSGLITGELIVETFAVPINSIDIHLCPVEFVILGERIIIE
XP_022137705.1 Down syndrome critical region protein 3 homolog isoform X2 [Momordica charantia]4.0e-0967.16Show/hide
Query:  MSTLCSLSGLITGELIVETFAVPINSIDIHLCPVEFVILGERIIIEIT------ETVMYVATLLSLF
        MSTLCSLS  ITGEL VE  AVPINSIDIHLC VE VILGERII E +      +   +VATLL LF
Subjt:  MSTLCSLSGLITGELIVETFAVPINSIDIHLCPVEFVILGERIIIEIT------ETVMYVATLLSLF
XP_023001802.1 Down syndrome critical region protein 3 homolog isoform X3 [Cucurbita maxima]2.6e-0866.67Show/hide
Query:  MSTLCSLSGLITGELIVETFAVPINSIDIHLCPVEFVILGERII-----IEITETVMYVATLLSLF
        M+TLCSLS  ITGEL VE  AVPI+SIDIHLC VE VILGERII     I+ T+  M VATLL  F
Subjt:  MSTLCSLSGLITGELIVETFAVPINSIDIHLCPVEFVILGERII-----IEITETVMYVATLLSLF
XP_038895697.1 vacuolar protein sorting-associated protein 26C isoform X1 [Benincasa hispida]4.0e-0986.96Show/hide
Query:  MSTLCSLSGLITGELIVETFAVPINSIDIHLCPVEFVILGERIIIE
        MSTLCSLS  ITGELIVET AVPINSIDIHLC VE VILGERII E
Subjt:  MSTLCSLSGLITGELIVETFAVPINSIDIHLCPVEFVILGERIIIE
XP_038895698.1 vacuolar protein sorting-associated protein 26C isoform X2 [Benincasa hispida]4.0e-0986.96Show/hide
Query:  MSTLCSLSGLITGELIVETFAVPINSIDIHLCPVEFVILGERIIIE
        MSTLCSLS  ITGELIVET AVPINSIDIHLC VE VILGERII E
Subjt:  MSTLCSLSGLITGELIVETFAVPINSIDIHLCPVEFVILGERIIIE
TrEMBL top hitse value%identityAlignment
A0A0A0LT45 Uncharacterized protein3.3e-0984.78Show/hide
Query:  MSTLCSLSGLITGELIVETFAVPINSIDIHLCPVEFVILGERIIIE
        MSTLCSLS  +TGELIVET AVPINSIDIHLC VE VILGERII E
Subjt:  MSTLCSLSGLITGELIVETFAVPINSIDIHLCPVEFVILGERIIIE
A0A5D3BIU2 Down syndrome critical region protein 3-like protein isoform X12.8e-0884.78Show/hide
Query:  MSTLCSLSGLITGELIVETFAVPINSIDIHLCPVEFVILGERIIIE
        MSTLCSLS  ITGELIVET AV INSIDIHLC VE VILGERII E
Subjt:  MSTLCSLSGLITGELIVETFAVPINSIDIHLCPVEFVILGERIIIE
A0A6J1C7E9 Down syndrome critical region protein 3 homolog isoform X21.9e-0967.16Show/hide
Query:  MSTLCSLSGLITGELIVETFAVPINSIDIHLCPVEFVILGERIIIEIT------ETVMYVATLLSLF
        MSTLCSLS  ITGEL VE  AVPINSIDIHLC VE VILGERII E +      +   +VATLL LF
Subjt:  MSTLCSLSGLITGELIVETFAVPINSIDIHLCPVEFVILGERIIIEIT------ETVMYVATLLSLF
A0A6J1E8H8 Down syndrome critical region protein 3 homolog isoform X31.3e-0866.67Show/hide
Query:  MSTLCSLSGLITGELIVETFAVPINSIDIHLCPVEFVILGERII-----IEITETVMYVATLLSLF
        M+TLCSLS  ITGEL VE  AVPI+SIDIHLC VE VILGERII     I+ T+  M VATLL  F
Subjt:  MSTLCSLSGLITGELIVETFAVPINSIDIHLCPVEFVILGERII-----IEITETVMYVATLLSLF
A0A6J1KHN5 Down syndrome critical region protein 3 homolog isoform X31.3e-0866.67Show/hide
Query:  MSTLCSLSGLITGELIVETFAVPINSIDIHLCPVEFVILGERII-----IEITETVMYVATLLSLF
        M+TLCSLS  ITGEL VE  AVPI+SIDIHLC VE VILGERII     I+ T+  M VATLL  F
Subjt:  MSTLCSLSGLITGELIVETFAVPINSIDIHLCPVEFVILGERII-----IEITETVMYVATLLSLF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G48550.1 Vacuolar protein sorting-associated protein 261.5e-0649.15Show/hide
Query:  MSTLCSLSGLITGELIVETFAVPINSIDIHLCPVEFVILGERIIIEITETVMYVATLLS
        ++T CSL   ++GEL VE  +VPI SIDIHL  VE +I+GERI   +TET +  +T ++
Subjt:  MSTLCSLSGLITGELIVETFAVPINSIDIHLCPVEFVILGERIIIEITETVMYVATLLS
AT1G48550.2 Vacuolar protein sorting-associated protein 261.5e-0649.15Show/hide
Query:  MSTLCSLSGLITGELIVETFAVPINSIDIHLCPVEFVILGERIIIEITETVMYVATLLS
        ++T CSL   ++GEL VE  +VPI SIDIHL  VE +I+GERI   +TET +  +T ++
Subjt:  MSTLCSLSGLITGELIVETFAVPINSIDIHLCPVEFVILGERIIIEITETVMYVATLLS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAACTCTGTGCTCTCTTTCAGGCCTCATCACCGGCGAATTAATCGTTGAAACATTTGCAGTCCCCATTAATTCAATTGACATTCACTTGTGTCCCGTCGAATTTGT
TATTCTTGGAGAAAGAATCATAATTGAAATTACCGAAACGGTGATGTATGTCGCAACATTACTCTCCCTATTTACTACCCCGCCTTTTGACTTGCCCAACAGTCTTTGCT
GGGGGGCAAATATCCTTGTAGATAACAAGGGATGCATTACAATGTTCGGACTAGTCAAACAAAATAAACTCGATAAAACCATCGGTGTGTTACTCGATATCGACTTTACC
ATAATATCTATTAAGATCGGTAAGACGAAGAAAAAGGGTTATAAAATTGTTAAAGTGGCCAAAATCGTTATCGATACTTCAATCTATGAAGTGGTATCGATGGAAATTGT
GACAAACTTACCAAATATGCAAACTCCATATCCAAATGACAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAACTCTGTGCTCTCTTTCAGGCCTCATCACCGGCGAATTAATCGTTGAAACATTTGCAGTCCCCATTAATTCAATTGACATTCACTTGTGTCCCGTCGAATTTGT
TATTCTTGGAGAAAGAATCATAATTGAAATTACCGAAACGGTGATGTATGTCGCAACATTACTCTCCCTATTTACTACCCCGCCTTTTGACTTGCCCAACAGTCTTTGCT
GGGGGGCAAATATCCTTGTAGATAACAAGGGATGCATTACAATGTTCGGACTAGTCAAACAAAATAAACTCGATAAAACCATCGGTGTGTTACTCGATATCGACTTTACC
ATAATATCTATTAAGATCGGTAAGACGAAGAAAAAGGGTTATAAAATTGTTAAAGTGGCCAAAATCGTTATCGATACTTCAATCTATGAAGTGGTATCGATGGAAATTGT
GACAAACTTACCAAATATGCAAACTCCATATCCAAATGACAATTGAATTGAGGACCTTTCCAAGCTCCATCAGATTACAAAACTTTATTACGAGGGTACGGTGGACCTCA
CTTTCAATATGATTAGGATGGACCTGTAAACAAAACCTAAAGTAATTTGATCGACCCACAAACTAAATTGGGATCGATTAATACTCATTCACCCAATATAAATGTGTATA
TTGATGAATCAATCATAAACATAATTAGAATATTTTCCTCTCTTTTCTTTAGAATTACGAATTTGTTGTATTTACTATTATCATTATTGTTACTATTTGAACCTAACAAT
ACCCGTAACATCATTGTAAAGGT
Protein sequenceShow/hide protein sequence
MSTLCSLSGLITGELIVETFAVPINSIDIHLCPVEFVILGERIIIEITETVMYVATLLSLFTTPPFDLPNSLCWGANILVDNKGCITMFGLVKQNKLDKTIGVLLDIDFT
IISIKIGKTKKKGYKIVKVAKIVIDTSIYEVVSMEIVTNLPNMQTPYPNDN