CuGenDBv2

Gene ID	MELO3C033377
Organism	Cucumis melo DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Genome location	chr08:22597176..22598888
RNA-Seq Expression	MELO3C033377
Synteny	MELO3C033377
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component) GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025858.1 retrotransposon protein [Cucumis melo var. makuwa]

1.5e-80

84.57

Show/hide

Query:  VVSMGGWKSDNGTFRSGYLAQLVHMMVEKLPGCQ------------TLKRTFQAIVEMRGAACSGFGWNNEEKCIIAEKELFDNWARSHPTAKGLLNKQF
        +VSMGGWKSDNGTFR GYLAQLV MM EKLPGCQ            TLKRTFQAI EMRG ACSGFGWN+EEKCI+AEKELFDNW RSHP AKGLLNK F
Subjt:  VVSMGGWKSDNGTFRSGYLAQLVHMMVEKLPGCQ------------TLKRTFQAIVEMRGAACSGFGWNNEEKCIIAEKELFDNWARSHPTAKGLLNKQF

Query:  PYYDELTYVFGRDRATGRFAETFANVGSNEPGGGYDRFDMGDGNDEFPPVYSQGIDLLQDDVRASRPSRASEGRT
        PYYDELTYVFGRDRATGRFAETFA+VGSNEPGGGYDRFDMGDGN++FPPVYSQGIDL QDDVRASRPSRASEGRT
Subjt:  PYYDELTYVFGRDRATGRFAETFANVGSNEPGGGYDRFDMGDGNDEFPPVYSQGIDLLQDDVRASRPSRASEGRT

KAA0032766.1 retrotransposon protein [Cucumis melo var. makuwa]

2.5e-80

82.49

Show/hide

Query:  VVSMGGWKSDNGTFRSGYLAQLVHMMVEKLPGCQ------------TLKRTFQAIVEMRGAACSGFGWNNEEKCIIAEKELFDNWARSHPTAKGLLNKQF
        +VSMGGWKSDNGTFR GYLAQLV MM EKLPGCQ            TLKRTFQAI EMRG ACSGFGWN+EEKCI+AEKELFDNW RSHP AKGLLNK F
Subjt:  VVSMGGWKSDNGTFRSGYLAQLVHMMVEKLPGCQ------------TLKRTFQAIVEMRGAACSGFGWNNEEKCIIAEKELFDNWARSHPTAKGLLNKQF

Query:  PYYDELTYVFGRDRATGRFAETFANVGSNEPGGGYDRFDMGDGNDEFPPVYSQGIDLLQDDVRASRPSRASEGRTST
        PYYDELTYVFGRDRATGRFAETFA+VGSNEPGGGYDRFDMGDGN++FPPVYSQG+D+ QDDVRASRPSRASEGRT +
Subjt:  PYYDELTYVFGRDRATGRFAETFANVGSNEPGGGYDRFDMGDGNDEFPPVYSQGIDLLQDDVRASRPSRASEGRTST

KAA0033744.1 retrotransposon protein [Cucumis melo var. makuwa]

2.5e-80

82.49

Show/hide

Query:  VVSMGGWKSDNGTFRSGYLAQLVHMMVEKLPGCQ------------TLKRTFQAIVEMRGAACSGFGWNNEEKCIIAEKELFDNWARSHPTAKGLLNKQF
        +VSMGGWKSDNGTFR GYLAQLV MM EKLPGCQ            TLKRTFQAI EMRG ACSGFGWN+EEKCI+AEKELFDNW RSHP AKGLLNK F
Subjt:  VVSMGGWKSDNGTFRSGYLAQLVHMMVEKLPGCQ------------TLKRTFQAIVEMRGAACSGFGWNNEEKCIIAEKELFDNWARSHPTAKGLLNKQF

Query:  PYYDELTYVFGRDRATGRFAETFANVGSNEPGGGYDRFDMGDGNDEFPPVYSQGIDLLQDDVRASRPSRASEGRTST
        PYYDELTYVFGRDRATGRFAETFA+VGSNEPGGGYDRFDMGDGN++FPPVYSQG+D+ QDDVRASRPSRASEGRT +
Subjt:  PYYDELTYVFGRDRATGRFAETFANVGSNEPGGGYDRFDMGDGNDEFPPVYSQGIDLLQDDVRASRPSRASEGRTST

KAA0066208.1 retrotransposon protein [Cucumis melo var. makuwa]

1.9e-80

83.05

Show/hide

Query:  VVSMGGWKSDNGTFRSGYLAQLVHMMVEKLPGCQ------------TLKRTFQAIVEMRGAACSGFGWNNEEKCIIAEKELFDNWARSHPTAKGLLNKQF
        +VSMGGWKSDNGTFR GYLAQLV MM EKLPGCQ            TLKRTFQAI EMRG ACSGFGWN+EEKCIIAEKELFDNW RSHP AKGLLNK F
Subjt:  VVSMGGWKSDNGTFRSGYLAQLVHMMVEKLPGCQ------------TLKRTFQAIVEMRGAACSGFGWNNEEKCIIAEKELFDNWARSHPTAKGLLNKQF

Query:  PYYDELTYVFGRDRATGRFAETFANVGSNEPGGGYDRFDMGDGNDEFPPVYSQGIDLLQDDVRASRPSRASEGRTST
        PYYDELTYVFGRDRATGRFAETFA+VGSNEPGGGYDRFDMGDGN++FPPVYSQG+D+ QDDVRASRPSRASEGRT +
Subjt:  PYYDELTYVFGRDRATGRFAETFANVGSNEPGGGYDRFDMGDGNDEFPPVYSQGIDLLQDDVRASRPSRASEGRTST

TYK21395.1 retrotransposon protein [Cucumis melo var. makuwa]

2.5e-80

82.49

Show/hide

Query:  VVSMGGWKSDNGTFRSGYLAQLVHMMVEKLPGCQ------------TLKRTFQAIVEMRGAACSGFGWNNEEKCIIAEKELFDNWARSHPTAKGLLNKQF
        +VSMGGWKSDNGTFR GYLAQLV MM EKLPGCQ            TLKRTFQAI EMRG ACSGFGWN+EEKCI+AEKELFDNW RSHP AKGLLNK F
Subjt:  VVSMGGWKSDNGTFRSGYLAQLVHMMVEKLPGCQ------------TLKRTFQAIVEMRGAACSGFGWNNEEKCIIAEKELFDNWARSHPTAKGLLNKQF

Query:  PYYDELTYVFGRDRATGRFAETFANVGSNEPGGGYDRFDMGDGNDEFPPVYSQGIDLLQDDVRASRPSRASEGRTST
        PYYDELTYVFGRDRATGRFAETFA+VGSNEPGGGYDRFDMGDGN++FPPVYSQG+D+ QDDVRASRPSRASEGRT +
Subjt:  PYYDELTYVFGRDRATGRFAETFANVGSNEPGGGYDRFDMGDGNDEFPPVYSQGIDLLQDDVRASRPSRASEGRTST

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SI64 Retrotransposon protein

7.1e-81

84.57

Show/hide

Query:  VVSMGGWKSDNGTFRSGYLAQLVHMMVEKLPGCQ------------TLKRTFQAIVEMRGAACSGFGWNNEEKCIIAEKELFDNWARSHPTAKGLLNKQF
        +VSMGGWKSDNGTFR GYLAQLV MM EKLPGCQ            TLKRTFQAI EMRG ACSGFGWN+EEKCI+AEKELFDNW RSHP AKGLLNK F
Subjt:  VVSMGGWKSDNGTFRSGYLAQLVHMMVEKLPGCQ------------TLKRTFQAIVEMRGAACSGFGWNNEEKCIIAEKELFDNWARSHPTAKGLLNKQF

Query:  PYYDELTYVFGRDRATGRFAETFANVGSNEPGGGYDRFDMGDGNDEFPPVYSQGIDLLQDDVRASRPSRASEGRT
        PYYDELTYVFGRDRATGRFAETFA+VGSNEPGGGYDRFDMGDGN++FPPVYSQGIDL QDDVRASRPSRASEGRT
Subjt:  PYYDELTYVFGRDRATGRFAETFANVGSNEPGGGYDRFDMGDGNDEFPPVYSQGIDLLQDDVRASRPSRASEGRT

A0A5A7SRU1 Retrotransposon protein

1.2e-80

82.49

Show/hide

Query:  VVSMGGWKSDNGTFRSGYLAQLVHMMVEKLPGCQ------------TLKRTFQAIVEMRGAACSGFGWNNEEKCIIAEKELFDNWARSHPTAKGLLNKQF
        +VSMGGWKSDNGTFR GYLAQLV MM EKLPGCQ            TLKRTFQAI EMRG ACSGFGWN+EEKCI+AEKELFDNW RSHP AKGLLNK F
Subjt:  VVSMGGWKSDNGTFRSGYLAQLVHMMVEKLPGCQ------------TLKRTFQAIVEMRGAACSGFGWNNEEKCIIAEKELFDNWARSHPTAKGLLNKQF

Query:  PYYDELTYVFGRDRATGRFAETFANVGSNEPGGGYDRFDMGDGNDEFPPVYSQGIDLLQDDVRASRPSRASEGRTST
        PYYDELTYVFGRDRATGRFAETFA+VGSNEPGGGYDRFDMGDGN++FPPVYSQG+D+ QDDVRASRPSRASEGRT +
Subjt:  PYYDELTYVFGRDRATGRFAETFANVGSNEPGGGYDRFDMGDGNDEFPPVYSQGIDLLQDDVRASRPSRASEGRTST

A0A5A7TRV1 Retrotransposon protein

1.2e-80

82.49

Show/hide

Query:  VVSMGGWKSDNGTFRSGYLAQLVHMMVEKLPGCQ------------TLKRTFQAIVEMRGAACSGFGWNNEEKCIIAEKELFDNWARSHPTAKGLLNKQF
        +VSMGGWKSDNGTFR GYLAQLV MM EKLPGCQ            TLKRTFQAI EMRG ACSGFGWN+EEKCI+AEKELFDNW RSHP AKGLLNK F
Subjt:  VVSMGGWKSDNGTFRSGYLAQLVHMMVEKLPGCQ------------TLKRTFQAIVEMRGAACSGFGWNNEEKCIIAEKELFDNWARSHPTAKGLLNKQF

Query:  PYYDELTYVFGRDRATGRFAETFANVGSNEPGGGYDRFDMGDGNDEFPPVYSQGIDLLQDDVRASRPSRASEGRTST
        PYYDELTYVFGRDRATGRFAETFA+VGSNEPGGGYDRFDMGDGN++FPPVYSQG+D+ QDDVRASRPSRASEGRT +
Subjt:  PYYDELTYVFGRDRATGRFAETFANVGSNEPGGGYDRFDMGDGNDEFPPVYSQGIDLLQDDVRASRPSRASEGRTST

A0A5A7VES2 Retrotransposon protein

9.3e-81

83.05

Show/hide

Query:  VVSMGGWKSDNGTFRSGYLAQLVHMMVEKLPGCQ------------TLKRTFQAIVEMRGAACSGFGWNNEEKCIIAEKELFDNWARSHPTAKGLLNKQF
        +VSMGGWKSDNGTFR GYLAQLV MM EKLPGCQ            TLKRTFQAI EMRG ACSGFGWN+EEKCIIAEKELFDNW RSHP AKGLLNK F
Subjt:  VVSMGGWKSDNGTFRSGYLAQLVHMMVEKLPGCQ------------TLKRTFQAIVEMRGAACSGFGWNNEEKCIIAEKELFDNWARSHPTAKGLLNKQF

Query:  PYYDELTYVFGRDRATGRFAETFANVGSNEPGGGYDRFDMGDGNDEFPPVYSQGIDLLQDDVRASRPSRASEGRTST
        PYYDELTYVFGRDRATGRFAETFA+VGSNEPGGGYDRFDMGDGN++FPPVYSQG+D+ QDDVRASRPSRASEGRT +
Subjt:  PYYDELTYVFGRDRATGRFAETFANVGSNEPGGGYDRFDMGDGNDEFPPVYSQGIDLLQDDVRASRPSRASEGRTST

A0A5D3DCZ1 Retrotransposon protein

1.2e-80

82.49

Show/hide

Query:  VVSMGGWKSDNGTFRSGYLAQLVHMMVEKLPGCQ------------TLKRTFQAIVEMRGAACSGFGWNNEEKCIIAEKELFDNWARSHPTAKGLLNKQF
        +VSMGGWKSDNGTFR GYLAQLV MM EKLPGCQ            TLKRTFQAI EMRG ACSGFGWN+EEKCI+AEKELFDNW RSHP AKGLLNK F
Subjt:  VVSMGGWKSDNGTFRSGYLAQLVHMMVEKLPGCQ------------TLKRTFQAIVEMRGAACSGFGWNNEEKCIIAEKELFDNWARSHPTAKGLLNKQF

Query:  PYYDELTYVFGRDRATGRFAETFANVGSNEPGGGYDRFDMGDGNDEFPPVYSQGIDLLQDDVRASRPSRASEGRTST
        PYYDELTYVFGRDRATGRFAETFA+VGSNEPGGGYDRFDMGDGN++FPPVYSQG+D+ QDDVRASRPSRASEGRT +
Subjt:  PYYDELTYVFGRDRATGRFAETFANVGSNEPGGGYDRFDMGDGNDEFPPVYSQGIDLLQDDVRASRPSRASEGRTST

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G24960.2 unknown protein

9.7e-06

28.57

Show/hide

Query:  SGFGWNNEEKCIIAEKELFDNWARSHPTAKGLLNKQFPYYDELTYVFGRDRATGRF
        +GF W+     +IA+ ++++ + ++HP A+    K  P Y  L ++FG++ + GR+
Subjt:  SGFGWNNEEKCIIAEKELFDNWARSHPTAKGLLNKQFPYYDELTYVFGRDRATGRF

AT4G02210.1 unknown protein

6.3e-05

27.27

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Query:  QTLKRTFQAIVEMRGAACSGFGWNNEEKCIIAEKELFDNWARSHPTAKGLLNKQFPYYDELTYVFG
        ++L+R F AI  +      GF W+NE + + A+  ++ ++ ++H  A+  + +  PYY +L  + G
Subjt:  QTLKRTFQAIVEMRGAACSGFGWNNEEKCIIAEKELFDNWARSHPTAKGLLNKQFPYYDELTYVFG

AT4G02210.2 unknown protein

6.3e-05

27.27

Show/hide

Query:  QTLKRTFQAIVEMRGAACSGFGWNNEEKCIIAEKELFDNWARSHPTAKGLLNKQFPYYDELTYVFG
        ++L+R F AI  +      GF W+NE + + A+  ++ ++ ++H  A+  + +  PYY +L  + G
Subjt:  QTLKRTFQAIVEMRGAACSGFGWNNEEKCIIAEKELFDNWARSHPTAKGLLNKQFPYYDELTYVFG

AT5G27260.1 unknown protein

1.1e-06

34.25

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Query:  LKRTFQAIVEMRGAACSGFGWNNEEKCIIAEKELFDNWARSHPTAKGLLNKQFPYYDELTYVFGRDRATGRFA
        LK  +Q+ ++++  + SGFGW+   K   A  E++ ++ ++HP  K L    F ++DEL  +FG   ATG+ A
Subjt:  LKRTFQAIVEMRGAACSGFGWNNEEKCIIAEKELFDNWARSHPTAKGLLNKQFPYYDELTYVFGRDRATGRFA

Sequences

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CDS sequence

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ATGTACGCGTGCCATGAATTTTTATCATGCCTTTTTTTACTGTTAAATTGTGAAATTACTTACGTACTCCATGTATTTTTTCTAATTTCTCATTCTCAGTATGTCAACCT
CAAATCGTGCCCCGAGACATGTCTGGACGAAGGAGGAGGAGGGCACTCTTGTGGAATGTTTAATGGAGTTGTGTCAATGGGGGGATGGAAATCAGATAATGGTACGTTCC
GCTCAGGTTACCTTGCACAGTTGGTACACATGATGGTGGAGAAACTACCTGGATGTCAGACACTGAAGCGAACATTCCAGGCCATTGTCGAAATGCGAGGTGCAGCGTGC
AGTGGCTTTGGGTGGAACAATGAAGAGAAATGTATCATTGCGGAGAAGGAATTATTTGATAATTGGGCTAGGTCGCATCCTACAGCGAAGGGACTCCTGAACAAACAATT
CCCGTATTACGACGAACTTACATATGTCTTCGGTCGCGATAGGGCGACCGGTCGCTTCGCTGAGACATTCGCGAACGTCGGGTCTAATGAGCCTGGTGGCGGATATGACA
GATTTGATATGGGGGATGGAAACGATGAGTTCCCGCCCGTGTACAGCCAGGGGATTGACCTCTTGCAGGACGATGTACGTGCATCCCGACCTTCTCGCGCTTCAGAGGGT
AGGACCTCTACGTATTTGCTTCGCCGTTCGGTACTTCTCCTCCGGTACAAGATCTTCTGCCGTCCGGATTCAAACATAAGAATACCTCTCTACCATGCTCAATTTAGACC
TATTGCTAGCCAAGACCAAGAAGCACCTGTTCTACATCATTGA

mRNA sequence

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Protein sequence

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MYACHEFLSCLFLLLNCEITYVLHVFFLISHSQYVNLKSCPETCLDEGGGGHSCGMFNGVVSMGGWKSDNGTFRSGYLAQLVHMMVEKLPGCQTLKRTFQAIVEMRGAAC
SGFGWNNEEKCIIAEKELFDNWARSHPTAKGLLNKQFPYYDELTYVFGRDRATGRFAETFANVGSNEPGGGYDRFDMGDGNDEFPPVYSQGIDLLQDDVRASRPSRASEG
RTSTYLLRRSVLLLRYKIFCRPDSNIRIPLYHAQFRPIASQDQEAPVLHH

MELO3C033377 (gene) of Melon (DHL92) v4 genome