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MELO3C033401 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C033401
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRibonuclease H
Genome locationchr08:24710909..24715699
RNA-Seq ExpressionMELO3C033401
SyntenyMELO3C033401
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036934.1 uncharacterized protein E6C27_scaffold86G00070 [Cucumis melo var. makuwa]2.8e-0472.5Show/hide
Query:  PLFIKPIPGAKVDVFSSLVKLSPNLKLRLKSVYQGFSKIE
        PLFIKP P AKVDVFS+LVK SP+LKLR K VYQ  S++E
Subjt:  PLFIKPIPGAKVDVFSSLVKLSPNLKLRLKSVYQGFSKIE
KAA0042506.1 putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H [Cucumis melo var. makuwa]9.7e-0573.17Show/hide
Query:  SPLFIKPIPGAKVDVFSSLVKLSPNLKLRLKSVYQGFSKIE
        SPLFIKP PGAKVD FS+LVK SP+LKLR K VYQ  S+ E
Subjt:  SPLFIKPIPGAKVDVFSSLVKLSPNLKLRLKSVYQGFSKIE
KAA0067952.1 uncharacterized protein E6C27_scaffold138G001360 [Cucumis melo var. makuwa]7.4e-0555.93Show/hide
Query:  FYDCEFPQLEFKSK---MSPLFIKPIPGAKVDVFSSLVKLSPNLKLRLKSVYQGFSKIE
        F + + P+ E +++     PLFIKP P AKVDVFS+LVK SP+LKLRLK VYQ  S+ E
Subjt:  FYDCEFPQLEFKSK---MSPLFIKPIPGAKVDVFSSLVKLSPNLKLRLKSVYQGFSKIE
TYK03242.1 putative integrase [Cucumis melo var. makuwa]9.7e-0575Show/hide
Query:  PLFIKPIPGAKVDVFSSLVKLSPNLKLRLKSVYQGFSKIE
        PLFIKP PGAKVDVF +LVK SP+LKLRLK VYQ  S+ E
Subjt:  PLFIKPIPGAKVDVFSSLVKLSPNLKLRLKSVYQGFSKIE
TrEMBL top hitse value%identityAlignment
A0A5A7T0A1 Ribonuclease H1.4e-0472.5Show/hide
Query:  PLFIKPIPGAKVDVFSSLVKLSPNLKLRLKSVYQGFSKIE
        PLFIKP P AKVDVFS+LVK SP+LKLR K VYQ  S++E
Subjt:  PLFIKPIPGAKVDVFSSLVKLSPNLKLRLKSVYQGFSKIE
A0A5A7TKN3 Putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H4.7e-0573.17Show/hide
Query:  SPLFIKPIPGAKVDVFSSLVKLSPNLKLRLKSVYQGFSKIE
        SPLFIKP PGAKVD FS+LVK SP+LKLR K VYQ  S+ E
Subjt:  SPLFIKPIPGAKVDVFSSLVKLSPNLKLRLKSVYQGFSKIE
A0A5A7VHZ0 Uncharacterized protein3.6e-0555.93Show/hide
Query:  FYDCEFPQLEFKSK---MSPLFIKPIPGAKVDVFSSLVKLSPNLKLRLKSVYQGFSKIE
        F + + P+ E +++     PLFIKP P AKVDVFS+LVK SP+LKLRLK VYQ  S+ E
Subjt:  FYDCEFPQLEFKSK---MSPLFIKPIPGAKVDVFSSLVKLSPNLKLRLKSVYQGFSKIE
A0A5D3BWN6 Putative integrase4.7e-0575Show/hide
Query:  PLFIKPIPGAKVDVFSSLVKLSPNLKLRLKSVYQGFSKIE
        PLFIKP PGAKVDVF +LVK SP+LKLRLK VYQ  S+ E
Subjt:  PLFIKPIPGAKVDVFSSLVKLSPNLKLRLKSVYQGFSKIE
A0A5D3DAC8 Putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H5.2e-0479.41Show/hide
Query:  PLFIKPIPGAKVDVFSSLVKLSPNLKLRLKSVYQ
        PLFIKP P AKVDVFS+LVKLSP+LKLR K VY+
Subjt:  PLFIKPIPGAKVDVFSSLVKLSPNLKLRLKSVYQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGACCCACACTCATTTTAAGGGTAGAACAAAATATAGAGGAAATGATTTAAGCCATAGGTTTGACAACATTCTCCCCTACAAAAAGGATTCTAGAGGGCAA
CATAGTATAGCTCATCTTGGTCACTCAATTGGCATAAATATATTGTCACAGCTCTTGTATGACATGCCTCATTTCCTCATTATGCTATGTGGATTTAGCGACAAT
CCTAGCGACGAATGGCTCTGCATCGTTAATACTTTTAGCGATGCGCCACGATTGCTCAAGTTGTGTCATGTTCTGTATTGCAAGGTTAAGGATGCATGCGTGGCG
GTATGCGATAGTTTCATAGTGTTGAAAGAGGTGTCTACAAGTCCAGGAAAAGTTTTCTACGATTGTGAGTTTCCACAATTGGAATTTAAAAGTAAGATGAGTCCA
TTATTTATCAAACCTATCCCTGGAGCTAAGGTTGATGTCTTTTCAAGTTTAGTTAAATTAAGCCCAAATCTGAAGTTGAGGCTGAAGTCTGTCTATCAGGGTTTT
TCAAAAATAGAAAAAATCGACAAAATATTTACATTCCATAGAACCAAACCACTAAAAGACAAAACTTATTACACTTGA
mRNA sequenceShow/hide mRNA sequence
CCACGAAAGAACCCCAAAAGCACTCCAAACCTAACCCAATTTTCTCCATCTTTACATCTTTTCTTCTTAACGACGGAGACCCATGGCGATGTCGAAGCTAAACGT
TTAGAAGACAGTGATCCACACTCGTTTTCTCATTGATGGTGACCCACACTCATTTTAAGGGTAGAACAAAATATAGAGGAAATGATTTAAGCCATAGGTTTGACA
ACATTCTCCCCTACAAAAAGGATTCTAGAGGGCAACATAGTATAGCTCATCTTGGTCACTCAATTGGCATAAATATATTGTCACAGCTCTTGTATGACATGCCTC
ATTTCCTCATTATGCTATGTGGATTTAGCGACAATCCTAGCGACGAATGGCTCTGCATCGTTAATACTTTTAGCGATGCGCCACGATTGCTCAAGTTGTGTCATG
TTCTGTATTGCAAGGTTAAGGATGCATGCGTGGCGGTATGCGATAGTTTCATAGTGTTGAAAGAGGTGTCTACAAGTCCAGGAAAAGTTTTCTACGATTGTGAGT
TTCCACAATTGGAATTTAAAAGTAAGATGAGTCCATTATTTATCAAACCTATCCCTGGAGCTAAGGTTGATGTCTTTTCAAGTTTAGTTAAATTAAGCCCAAATC
TGAAGTTGAGGCTGAAGTCTGTCTATCAGGGTTTTTCAAAAATAGAAAAAATCGACAAAATATTTACATTCCATAGAACCAAACCACTAAAAGACAAAACTTATT
ACACTTGA
Protein sequenceShow/hide protein sequence
MVTHTHFKGRTKYRGNDLSHRFDNILPYKKDSRGQHSIAHLGHSIGINILSQLLYDMPHFLIMLCGFSDNPSDEWLCIVNTFSDAPRLLKLCHVLYCKVKDACVA
VCDSFIVLKEVSTSPGKVFYDCEFPQLEFKSKMSPLFIKPIPGAKVDVFSSLVKLSPNLKLRLKSVYQGFSKIEKIDKIFTFHRTKPLKDKTYYT