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MELO3C033407 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C033407
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionTy1-copia retrotransposon protein
Genome locationchr08:25362359..25363956
RNA-Seq ExpressionMELO3C033407
SyntenyMELO3C033407
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050600.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.0e-1462.37Show/hide
Query:  VVAPPLLLYAANVAAPTIHRTAGRRRSVVYAAPLEVTFYAARLLRCTQLLYSNRTRQLLPHCCTPPSHTPTSSHTNLKTWLYQ--PHASTRRH
        VVAPPLLLYAANVAAPT+ RTAGRRRSVVY APLEVTFYAARLLRCTQ           P    P  HTPT++     T LY    HA+ R H
Subjt:  VVAPPLLLYAANVAAPTIHRTAGRRRSVVYAAPLEVTFYAARLLRCTQLLYSNRTRQLLPHCCTPPSHTPTSSHTNLKTWLYQ--PHASTRRH
TrEMBL top hitse value%identityAlignment
A0A5A7U5X3 Ty1-copia retrotransposon protein9.8e-1562.37Show/hide
Query:  VVAPPLLLYAANVAAPTIHRTAGRRRSVVYAAPLEVTFYAARLLRCTQLLYSNRTRQLLPHCCTPPSHTPTSSHTNLKTWLYQ--PHASTRRH
        VVAPPLLLYAANVAAPT+ RTAGRRRSVVY APLEVTFYAARLLRCTQ           P    P  HTPT++     T LY    HA+ R H
Subjt:  VVAPPLLLYAANVAAPTIHRTAGRRRSVVYAAPLEVTFYAARLLRCTQLLYSNRTRQLLPHCCTPPSHTPTSSHTNLKTWLYQ--PHASTRRH
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTCGTCGCTCCTCCGCTCCTACTGTACGCTGCAAACGTCGCTGCTCCTACTATACACCGCACCGCTGGACGCCGCCGCTCTGTGGTGTACGCCGCACCGCTGGAAGTCAC
CTTTTATGCAGCACGCCTTCTACGCTGCACCCAACTGCTGTACTCCAACCGCACACGCCAACTGCTGCCACATTGTTGTACGCCGCCGTCGCACACGCCAACCTCCAGCC
ACACAAATCTAAAAACGTGGTTGTACCAGCCACACGCATCAACCCGCCGCCACATTTTGCTGATACTTCCTAATATGGTCGTCGTTAAATACTTAAGGGCTGATTGTTCT
AATGGTTGTTGCTTCAAGAGATATTTGGTGAAACTTACTATGAGGCTTCATGAAGTATTAATACTCGAAAATACGTAA
mRNA sequenceShow/hide mRNA sequence
ACGTCGTCGCTCCTCCGCTCCTACTGTACGCTGCAAACGTCGCTGCTCCTACTATACACCGCACCGCTGGACGCCGCCGCTCTGTGGTGTACGCCGCACCGCTGGAAGTC
ACCTTTTATGCAGCACGCCTTCTACGCTGCACCCAACTGCTGTACTCCAACCGCACACGCCAACTGCTGCCACATTGTTGTACGCCGCCGTCGCACACGCCAACCTCCAG
CCACACAAATCTAAAAACGTGGTTGTACCAGCCACACGCATCAACCCGCCGCCACATTTTGCTGATACTTCCTAATATGGTCGTCGTTAAATACTTAAGGGCTGATTGTT
CTAATGGTTGTTGCTTCAAGAGATATTTGGTGAAACTTACTATGAGGCTTCATGAAGTATTAATACTCGAAAATACGTAATTATTGAGGGTCAGAACATAATTTAATGTT
TTAAAGTCTTATAGTTAGTAATTTTATTTACCGGTGTAAATTGAGAGTAGTTTGTTGAGAGACGTGAATAGTCATACTGCTTGTATAATATTATCGTAAATTATGTATAT
TATTGCAAATTATGTATACATATGACTTATTGTCGAAGAATGAAATTATTCTTGATTTGAAGGTTTATTTTGTCGATGAATTTGTCTTTA
Protein sequenceShow/hide protein sequence
VVAPPLLLYAANVAAPTIHRTAGRRRSVVYAAPLEVTFYAARLLRCTQLLYSNRTRQLLPHCCTPPSHTPTSSHTNLKTWLYQPHASTRRHILLILPNMVVVKYLRADCS
NGCCFKRYLVKLTMRLHEVLILENT