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MELO3C033450 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C033450
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
Descriptionbinding partner of ACD11 1-like
Genome locationchr08:28163004..28166365
RNA-Seq ExpressionMELO3C033450
SyntenyMELO3C033450
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0004565 - beta-galactosidase activity (molecular function)
InterPro domainsIPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051959.1 beta-galactosidase-like [Cucumis melo var. makuwa]2.2e-3275Show/hide
Query:  KTVKVSNISKLTYGIDIKEFFSFSSEILYVEMQRESENTQVVYITYKDSHGADTAILLT---------------AAMQKFTMKIVSMMKGEKLYHGQGGP
        +TVKVSNISKLT   DIKEFFSFSSEILYVEMQRESENTQ+VY+TYKDS GADT ILLT               AAMQKFT KIVSMMKGEKLYHGQGGP
Subjt:  KTVKVSNISKLTYGIDIKEFFSFSSEILYVEMQRESENTQVVYITYKDSHGADTAILLT---------------AAMQKFTMKIVSMMKGEKLYHGQGGP

Query:  IILSQVQS
        IILSQ+++
Subjt:  IILSQVQS

XP_004142266.1 binding partner of ACD11 1 [Cucumis sativus]1.6e-1785.25Show/hide
Query:  KTVKVSNISKLTYGIDIKEFFSFSSEILYVEMQRESENTQVVYITYKDSHGADTAILLTAA
        +TVKVSNISKLT   DIKEFFSFS EILYVEMQRESENTQV Y+TYKDS GADTAILLT A
Subjt:  KTVKVSNISKLTYGIDIKEFFSFSSEILYVEMQRESENTQVVYITYKDSHGADTAILLTAA

XP_008452423.1 PREDICTED: binding partner of ACD11 1-like isoform X1 [Cucumis melo]1.6e-1785.25Show/hide
Query:  KTVKVSNISKLTYGIDIKEFFSFSSEILYVEMQRESENTQVVYITYKDSHGADTAILLTAA
        +TVKVSNISKLT   DIKEFFSFS EILYVEMQRESENTQV Y+TYKDS GADTAILLT A
Subjt:  KTVKVSNISKLTYGIDIKEFFSFSSEILYVEMQRESENTQVVYITYKDSHGADTAILLTAA

XP_008452424.1 PREDICTED: binding partner of ACD11 1-like isoform X2 [Cucumis melo]1.6e-1785.25Show/hide
Query:  KTVKVSNISKLTYGIDIKEFFSFSSEILYVEMQRESENTQVVYITYKDSHGADTAILLTAA
        +TVKVSNISKLT   DIKEFFSFS EILYVEMQRESENTQV Y+TYKDS GADTAILLT A
Subjt:  KTVKVSNISKLTYGIDIKEFFSFSSEILYVEMQRESENTQVVYITYKDSHGADTAILLTAA

XP_038891484.1 binding partner of ACD11 1 [Benincasa hispida]7.7e-1781.97Show/hide
Query:  KTVKVSNISKLTYGIDIKEFFSFSSEILYVEMQRESENTQVVYITYKDSHGADTAILLTAA
        +TVKVSNISK+T   DIKEFFSFS EILYVEMQRE+ENTQV Y+TYKDS GADTAILLT A
Subjt:  KTVKVSNISKLTYGIDIKEFFSFSSEILYVEMQRESENTQVVYITYKDSHGADTAILLTAA

TrEMBL top hitse value%identityAlignment
A0A0A0KIR7 RRM domain-containing protein7.6e-1885.25Show/hide
Query:  KTVKVSNISKLTYGIDIKEFFSFSSEILYVEMQRESENTQVVYITYKDSHGADTAILLTAA
        +TVKVSNISKLT   DIKEFFSFS EILYVEMQRESENTQV Y+TYKDS GADTAILLT A
Subjt:  KTVKVSNISKLTYGIDIKEFFSFSSEILYVEMQRESENTQVVYITYKDSHGADTAILLTAA

A0A1S3BT66 binding partner of ACD11 1-like isoform X27.6e-1885.25Show/hide
Query:  KTVKVSNISKLTYGIDIKEFFSFSSEILYVEMQRESENTQVVYITYKDSHGADTAILLTAA
        +TVKVSNISKLT   DIKEFFSFS EILYVEMQRESENTQV Y+TYKDS GADTAILLT A
Subjt:  KTVKVSNISKLTYGIDIKEFFSFSSEILYVEMQRESENTQVVYITYKDSHGADTAILLTAA

A0A1S3BUX7 binding partner of ACD11 1-like isoform X17.6e-1885.25Show/hide
Query:  KTVKVSNISKLTYGIDIKEFFSFSSEILYVEMQRESENTQVVYITYKDSHGADTAILLTAA
        +TVKVSNISKLT   DIKEFFSFS EILYVEMQRESENTQV Y+TYKDS GADTAILLT A
Subjt:  KTVKVSNISKLTYGIDIKEFFSFSSEILYVEMQRESENTQVVYITYKDSHGADTAILLTAA

A0A5A7UEN2 Beta-galactosidase1.1e-3275Show/hide
Query:  KTVKVSNISKLTYGIDIKEFFSFSSEILYVEMQRESENTQVVYITYKDSHGADTAILLT---------------AAMQKFTMKIVSMMKGEKLYHGQGGP
        +TVKVSNISKLT   DIKEFFSFSSEILYVEMQRESENTQ+VY+TYKDS GADT ILLT               AAMQKFT KIVSMMKGEKLYHGQGGP
Subjt:  KTVKVSNISKLTYGIDIKEFFSFSSEILYVEMQRESENTQVVYITYKDSHGADTAILLT---------------AAMQKFTMKIVSMMKGEKLYHGQGGP

Query:  IILSQVQS
        IILSQ+++
Subjt:  IILSQVQS

A0A5A7UTK1 Binding partner of ACD11 1-like isoform X17.6e-1885.25Show/hide
Query:  KTVKVSNISKLTYGIDIKEFFSFSSEILYVEMQRESENTQVVYITYKDSHGADTAILLTAA
        +TVKVSNISKLT   DIKEFFSFS EILYVEMQRESENTQV Y+TYKDS GADTAILLT A
Subjt:  KTVKVSNISKLTYGIDIKEFFSFSSEILYVEMQRESENTQVVYITYKDSHGADTAILLTAA

SwissProt top hitse value%identityAlignment
P48980 Beta-galactosidase7.5e-0776.47Show/hide
Query:  AAMQKFTMKIVSMMKGEKLYHGQGGPIILSQVQS
        AAMQKFT KIV MMK EKLY  QGGPIILSQ+++
Subjt:  AAMQKFTMKIVSMMKGEKLYHGQGGPIILSQVQS

P48981 Beta-galactosidase9.9e-0776.47Show/hide
Query:  AAMQKFTMKIVSMMKGEKLYHGQGGPIILSQVQS
        AAMQKFT KIVSMMK EKL+  QGGPIILSQ+++
Subjt:  AAMQKFTMKIVSMMKGEKLYHGQGGPIILSQVQS

Q9LFA6 Beta-galactosidase 21.1e-0572.73Show/hide
Query:  AMQKFTMKIVSMMKGEKLYHGQGGPIILSQVQS
        AMQKFT KIV MMK EKL+  QGGPIILSQ+++
Subjt:  AMQKFTMKIVSMMKGEKLYHGQGGPIILSQVQS

Q9LFD5 Binding partner of ACD11 13.7e-0644.26Show/hide
Query:  KTVKVSNISKLTYGIDIKEFFSFSSEILYVEMQRESENTQVVYITYKDSHGADTAILLTAA
        ++VKV N+S      DIKEFFSFS E+  +++Q    N    Y+T+K++ GA+TA+LL+ A
Subjt:  KTVKVSNISKLTYGIDIKEFFSFSSEILYVEMQRESENTQVVYITYKDSHGADTAILLTAA

Q9SCV0 Beta-galactosidase 126.4e-0673.53Show/hide
Query:  AAMQKFTMKIVSMMKGEKLYHGQGGPIILSQVQS
        AAMQKFT KIV MMK EKL+  QGGPIILSQ+++
Subjt:  AAMQKFTMKIVSMMKGEKLYHGQGGPIILSQVQS

Arabidopsis top hitse value%identityAlignment
AT1G67950.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.0e-1458.06Show/hide
Query:  KTVKVSNISKLTYGIDIKEFFSFSSEILYVEMQRESENTQVVYITYKDSHGADTAILLTAAM
        KTVK+SN+S +    D+KEFFSFS +I YVEM+ E++ +QV Y+T+KDS GA+TA+LLT A+
Subjt:  KTVKVSNISKLTYGIDIKEFFSFSSEILYVEMQRESENTQVVYITYKDSHGADTAILLTAAM

AT1G67950.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.0e-1458.06Show/hide
Query:  KTVKVSNISKLTYGIDIKEFFSFSSEILYVEMQRESENTQVVYITYKDSHGADTAILLTAAM
        KTVK+SN+S +    D+KEFFSFS +I YVEM+ E++ +QV Y+T+KDS GA+TA+LLT A+
Subjt:  KTVKVSNISKLTYGIDIKEFFSFSSEILYVEMQRESENTQVVYITYKDSHGADTAILLTAAM

AT1G67950.3 RNA-binding (RRM/RBD/RNP motifs) family protein1.0e-1458.06Show/hide
Query:  KTVKVSNISKLTYGIDIKEFFSFSSEILYVEMQRESENTQVVYITYKDSHGADTAILLTAAM
        KTVK+SN+S +    D+KEFFSFS +I YVEM+ E++ +QV Y+T+KDS GA+TA+LLT A+
Subjt:  KTVKVSNISKLTYGIDIKEFFSFSSEILYVEMQRESENTQVVYITYKDSHGADTAILLTAAM

AT4G17720.1 RNA-binding (RRM/RBD/RNP motifs) family protein3.2e-1353.52Show/hide
Query:  TVKVSNISKLTYGIDIKEFFSFSSEILYVEMQRESENTQVVYITYKDSHGADTAILLTAAMQKFTMKIVSM
        TVKVSN+S      D+KEFFSFS +ILY+E Q E+E T++ Y+T+KD  GA+TA+LL+ A    +  IVSM
Subjt:  TVKVSNISKLTYGIDIKEFFSFSSEILYVEMQRESENTQVVYITYKDSHGADTAILLTAAMQKFTMKIVSM

AT5G46870.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.4e-1140.86Show/hide
Query:  TVKVSNISKLTYGIDIKEFFSFSSEILYVEMQRESENTQVVYITYKDSHGADTAILLTAAMQKFTMKIVSMMKGEKLYHGQGGPIILSQVQSL
        TVKVSN+S      D+KEFFSFS +I Y+E Q E++ +++ Y+T+KD  GA+TA+LLT +    +   V+M    +L      P  L+ ++SL
Subjt:  TVKVSNISKLTYGIDIKEFFSFSSEILYVEMQRESENTQVVYITYKDSHGADTAILLTAAMQKFTMKIVSMMKGEKLYHGQGGPIILSQVQSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTAGGTCAGGACAACCTCTAGATCTCAAAAAAACCGTCAAAGTCAGCAATATCTCAAAACTTACTTATGGCATAGATATCAAAGAATTCTTTTCATTCTCTAGTGA
AATCCTTTATGTTGAAATGCAAAGAGAAAGTGAGAACACTCAAGTGGTTTATATTACATATAAGGATTCTCATGGAGCTGATACTGCAATACTTTTGACGGCCGCTATGC
AAAAATTCACTATGAAGATTGTCAGTATGATGAAGGGGGAGAAGTTATATCATGGCCAAGGAGGACCTATTATTCTTTCTCAGGTTCAGAGTTTAGACGGCTATTTCTTC
CCTTCTTCTTTCAGGAGTAAGGCTAAGGAAGAAAGGCTAGACCCCGGATTTGCCGCCTATGGGAAGAGGGGAGCTCGAAAGGCAGAAGCTTGA
mRNA sequenceShow/hide mRNA sequence
GCGCGATAGCCAACCAACCCTCACATTGTTCAATTGACTTCTTCATCTCCTCACATTATTCAATCAATTTCTCATCTCATCTCATCTTTTCATCGGCCAGCCTCTTACGA
CTTTTGTTCAACCGACGACGACGTCGCTTCCATCTCTGTCTGTCGTCTCTCTGTTCATCGACACGTTGTCTTGCTTCCATTCAATAGTTGTTTTGTTATATTCCCCTTTG
ACGAGCAAGTGGCGCCTCATACATTTGGTGTTTGTTCATTTCCTTATGATGTTGAATGATCTCTAATGCCTCAAGGCTTGAGAGAACTCCTCAAGCATTTTAATCTAAAG
ACTCGTCGTGACCTTCTTCTCAATTGGTTAGAGTTCTTTTATGTCTCTCTGACCTCTATTCTGTAAAAACCTCTTCACATCTTTTTCTTTCGTTCTTAACCATGAGTAGG
TCAGGACAACCTCTAGATCTCAAAAAAACCGTCAAAGTCAGCAATATCTCAAAACTTACTTATGGCATAGATATCAAAGAATTCTTTTCATTCTCTAGTGAAATCCTTTA
TGTTGAAATGCAAAGAGAAAGTGAGAACACTCAAGTGGTTTATATTACATATAAGGATTCTCATGGAGCTGATACTGCAATACTTTTGACGGCCGCTATGCAAAAATTCA
CTATGAAGATTGTCAGTATGATGAAGGGGGAGAAGTTATATCATGGCCAAGGAGGACCTATTATTCTTTCTCAGGTTCAGAGTTTAGACGGCTATTTCTTCCCTTCTTCT
TTCAGGAGTAAGGCTAAGGAAGAAAGGCTAGACCCCGGATTTGCCGCCTATGGGAAGAGGGGAGCTCGAAAGGCAGAAGCTTGA
Protein sequenceShow/hide protein sequence
MSRSGQPLDLKKTVKVSNISKLTYGIDIKEFFSFSSEILYVEMQRESENTQVVYITYKDSHGADTAILLTAAMQKFTMKIVSMMKGEKLYHGQGGPIILSQVQSLDGYFF
PSSFRSKAKEERLDPGFAAYGKRGARKAEA