; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C033461 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C033461
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
Description50S ribosomal protein L1
Genome locationchr08:28996111..28999980
RNA-Seq ExpressionMELO3C033461
SyntenyMELO3C033461
Gene Ontology termsGO:0000470 - maturation of LSU-rRNA (biological process)
GO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR016095 - Ribosomal protein L1, 3-layer alpha/beta-sandwich
IPR023674 - Ribosomal protein L1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048509.1 CMP-sialic acid transporter 4 isoform X2 [Cucumis melo var. makuwa]1.0e-07100Show/hide
Query:  IMTLLSGFAGVYTEVNYLCSFITVLMILNHALR
        IMTLLSGFAGVYTEVNYLCSFITVLMILNHALR
Subjt:  IMTLLSGFAGVYTEVNYLCSFITVLMILNHALR

KAA0054392.1 50S ribosomal protein L1 [Cucumis melo var. makuwa]9.2e-1755.56Show/hide
Query:  GGEDLTEQIKGGFMEFDKLIASPDKMPKVLN-------------------------------LMHIMTLLSGFAGVYTEVNYLCSFITVLMILNHALRY
        GGEDL EQIKGGFMEFDKLI+SPD MPKVL                                +  IM  LSGFAGVYT+VNYLCSFIT+LMILNH LR+
Subjt:  GGEDLTEQIKGGFMEFDKLIASPDKMPKVLN-------------------------------LMHIMTLLSGFAGVYTEVNYLCSFITVLMILNHALRY

XP_008464620.1 PREDICTED: uncharacterized protein LOC103502458 [Cucumis melo]8.7e-1597.62Show/hide
Query:  MQEQIWFGGEDLTEQIKGGFMEFDKLIASPDKMPKVLNLMHI
        MQEQIWFGGEDLTEQIKGGFMEFDKLIASPDKMPKVLNLMH+
Subjt:  MQEQIWFGGEDLTEQIKGGFMEFDKLIASPDKMPKVLNLMHI

XP_027354619.1 50S ribosomal protein L1, chloroplastic isoform X3 [Abrus precatorius]7.3e-0680.56Show/hide
Query:  GGEDLTEQIKGGFMEFDKLIASPDKMPKVLNLMHIM
        GGEDL EQIKGGFMEFDKLIASPD MPKV +L  I+
Subjt:  GGEDLTEQIKGGFMEFDKLIASPDKMPKVLNLMHIM

XP_030965667.1 50S ribosomal protein L1, chloroplastic [Quercus lobata]7.3e-0680.56Show/hide
Query:  GGEDLTEQIKGGFMEFDKLIASPDKMPKVLNLMHIM
        GGEDL EQIKGGFMEFDKLIASPD MPKV +L  I+
Subjt:  GGEDLTEQIKGGFMEFDKLIASPDKMPKVLNLMHIM

TrEMBL top hitse value%identityAlignment
A0A1S3CLX4 uncharacterized protein LOC1035024584.2e-1597.62Show/hide
Query:  MQEQIWFGGEDLTEQIKGGFMEFDKLIASPDKMPKVLNLMHI
        MQEQIWFGGEDLTEQIKGGFMEFDKLIASPDKMPKVLNLMH+
Subjt:  MQEQIWFGGEDLTEQIKGGFMEFDKLIASPDKMPKVLNLMHI

A0A1S3TKD3 Ribosomal protein3.6e-0680.56Show/hide
Query:  GGEDLTEQIKGGFMEFDKLIASPDKMPKVLNLMHIM
        GGEDL EQIKGGFMEFDKLIASPD MPKV +L  I+
Subjt:  GGEDLTEQIKGGFMEFDKLIASPDKMPKVLNLMHIM

A0A5A7U4Z1 CMP-sialic acid transporter 4 isoform X25.0e-08100Show/hide
Query:  IMTLLSGFAGVYTEVNYLCSFITVLMILNHALR
        IMTLLSGFAGVYTEVNYLCSFITVLMILNHALR
Subjt:  IMTLLSGFAGVYTEVNYLCSFITVLMILNHALR

A0A5A7UF52 50S ribosomal protein L14.5e-1755.56Show/hide
Query:  GGEDLTEQIKGGFMEFDKLIASPDKMPKVLN-------------------------------LMHIMTLLSGFAGVYTEVNYLCSFITVLMILNHALRY
        GGEDL EQIKGGFMEFDKLI+SPD MPKVL                                +  IM  LSGFAGVYT+VNYLCSFIT+LMILNH LR+
Subjt:  GGEDLTEQIKGGFMEFDKLIASPDKMPKVLN-------------------------------LMHIMTLLSGFAGVYTEVNYLCSFITVLMILNHALRY

A0A6A4QSG5 Ribosomal protein3.6e-0680.56Show/hide
Query:  GGEDLTEQIKGGFMEFDKLIASPDKMPKVLNLMHIM
        GGEDL EQIKGGFMEFDKLIASPD MPKV +L  I+
Subjt:  GGEDLTEQIKGGFMEFDKLIASPDKMPKVLNLMHIM

SwissProt top hitse value%identityAlignment
B8JB73 50S ribosomal protein L13.2e-0461.11Show/hide
Query:  GGEDLTEQIKGGFMEFDKLIASPDKMPKVLNLMHIM
        G EDL E+I+GGFM+FDKLIA+PD M  V  L  I+
Subjt:  GGEDLTEQIKGGFMEFDKLIASPDKMPKVLNLMHIM

P49208 50S ribosomal protein L1, chloroplastic (Fragment)9.6e-0980.56Show/hide
Query:  GGEDLTEQIKGGFMEFDKLIASPDKMPKVLNLMHIM
        GGEDL EQIKGGFMEFDKLIASPD MPKV +L  I+
Subjt:  GGEDLTEQIKGGFMEFDKLIASPDKMPKVLNLMHIM

Q7NK78 50S ribosomal protein L12.5e-0462.5Show/hide
Query:  GGEDLTEQIKGGFMEFDKLIASPDKMPKVLNL
        G E+L E+I+GGFMEFD +IA+PD MP+V  L
Subjt:  GGEDLTEQIKGGFMEFDKLIASPDKMPKVLNL

Q9LE95 50S ribosomal protein L1, chloroplastic7.6e-0666.67Show/hide
Query:  GGEDLTEQIKGGFMEFDKLIASPDKMPKVLNLMHIM
        GGE+L EQIKGGFM+FDKLIA+ D M KV +L  I+
Subjt:  GGEDLTEQIKGGFMEFDKLIASPDKMPKVLNLMHIM

Q9LY66 50S ribosomal protein L1, chloroplastic1.5e-0672.22Show/hide
Query:  GGEDLTEQIKGGFMEFDKLIASPDKMPKVLNLMHIM
        G +DL EQIKGGFMEFDKLIASPD M KV  L  I+
Subjt:  GGEDLTEQIKGGFMEFDKLIASPDKMPKVLNLMHIM

Arabidopsis top hitse value%identityAlignment
AT3G63490.1 Ribosomal protein L1p/L10e family1.1e-0772.22Show/hide
Query:  GGEDLTEQIKGGFMEFDKLIASPDKMPKVLNLMHIM
        G +DL EQIKGGFMEFDKLIASPD M KV  L  I+
Subjt:  GGEDLTEQIKGGFMEFDKLIASPDKMPKVLNLMHIM

AT3G63490.2 Ribosomal protein L1p/L10e family1.1e-0772.22Show/hide
Query:  GGEDLTEQIKGGFMEFDKLIASPDKMPKVLNLMHIM
        G +DL EQIKGGFMEFDKLIASPD M KV  L  I+
Subjt:  GGEDLTEQIKGGFMEFDKLIASPDKMPKVLNLMHIM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGAGCAGATTTGGTTTGGAGGTGAGGATTTGACAGAACAGATCAAAGGAGGTTTCATGGAGTTTGATAAGTTGATTGCTTCACCAGATAAGATGCCCAAGGTTCT
CAATTTGATGCACATCATGACACTCTTGAGTGGGTTTGCTGGAGTGTACACTGAGGTGAATTACTTGTGTTCATTTATTACGGTTCTCATGATCCTAAATCACGCCCTTA
GGTATTAA
mRNA sequenceShow/hide mRNA sequence
AGGCGCTAACTCAACAACGCCATTATCCATTCCCTAAGGTGAAAAATTTAACGAAGCAAAAAATGCAAGAGCAGATTTGGTTTGGAGGTGAGGATTTGACAGAACAGATC
AAAGGAGGTTTCATGGAGTTTGATAAGTTGATTGCTTCACCAGATAAGATGCCCAAGGTTCTCAATTTGATGCACATCATGACACTCTTGAGTGGGTTTGCTGGAGTGTA
CACTGAGGTGAATTACTTGTGTTCATTTATTACGGTTCTCATGATCCTAAATCACGCCCTTAGGTATTAA
Protein sequenceShow/hide protein sequence
MQEQIWFGGEDLTEQIKGGFMEFDKLIASPDKMPKVLNLMHIMTLLSGFAGVYTEVNYLCSFITVLMILNHALRY