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MELO3C033465 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C033465
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionDNA-directed RNA polymerase I subunit RPA1-like
Genome locationchr08:29448558..29449082
RNA-Seq ExpressionMELO3C033465
SyntenyMELO3C033465
Gene Ontology termsGO:0032774 - RNA biosynthetic process (biological process)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsIPR015410 - Domain of unknown function DUF1985


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXC30509.1 hypothetical protein L484_010758 [Morus notabilis]1.4e-1530.86Show/hide
Query:  MTRLKGHKFPELNLEERKENGLKNAFFRHDELIARRDIERTFKALCNEEDSLKEKLVNLYILEAFLIPKQQHNHINLLHLDILDNEEIFKDYPWGRLSHI
        +T L    +P +  ++  E+  K  FFR  + + R  +   F+A     D    KL  LY LE+ LIPK+  N+I+  HL ++DN E+F +YPWGRLS+ 
Subjt:  MTRLKGHKFPELNLEERKENGLKNAFFRHDELIARRDIERTFKALCNEEDSLKEKLVNLYILEAFLIPKQQHNHINLLHLDILDNEEIFKDYPWGRLSHI

Query:  LTYQFLKKASYSDKDVVY-IQGFPLNLVYFTFEKIPRLSNLDVGFERKLAKEGQPILTWECLETSDWRTLNIDIF
        +T  ++K++  S +   Y I GFP  ++ + +E IP L   ++   +++      I+ WE  +   +R +   +F
Subjt:  LTYQFLKKASYSDKDVVY-IQGFPLNLVYFTFEKIPRLSNLDVGFERKLAKEGQPILTWECLETSDWRTLNIDIF

KAA0038287.1 DNA-directed RNA polymerase I subunit RPA1-like [Cucumis melo var. makuwa]4.7e-4077.36Show/hide
Query:  YILEAFLIPKQQHNHINLLHLDILDNEEIFKDYPWGRLSHILTYQFLKKASYSDKDVVYIQGFPLNLVYFTFEKIPRLSNLDVGFERKLAKEGQPILTWE
        ++ +A    K QHNHINLLHLDIL+NEEIFK YPWGRLS+ILTYQFLKKASY+DKDVVY+QGFPL LVY+  EKIPR SNLDVGF RKLA EG PI+TWE
Subjt:  YILEAFLIPKQQHNHINLLHLDILDNEEIFKDYPWGRLSHILTYQFLKKASYSDKDVVYIQGFPLNLVYFTFEKIPRLSNLDVGFERKLAKEGQPILTWE

Query:  CLETSD
        CL+TSD
Subjt:  CLETSD

TYK09852.1 protein Ycf2-like [Cucumis melo var. makuwa]7.6e-1429.38Show/hide
Query:  MTRLKGHKFPELNLEERKENG-LKNAFFRHDELIARRDIERTFKALCNEEDSLKEKLVNLYILEAFLIPKQQHNHINLLHLDILDNEEIFKDYPWGRLSH
        +T L+ H+ P +N E+ K  G LK  +F + + + R+ +   F       D  + K+  LY LE+FLIPKQ+   ++  H+ ++D++E+F  YPWGR++ 
Subjt:  MTRLKGHKFPELNLEERKENG-LKNAFFRHDELIARRDIERTFKALCNEEDSLKEKLVNLYILEAFLIPKQQHNHINLLHLDILDNEEIFKDYPWGRLSH

Query:  ILTYQFLKKA--SYSDKDVVYIQGFPLNLVYFTFEKIPRLSNLDVGFERKLAKEGQPILTWECLETSDWRTLNIDIF
         L   F+ +A  S     +    GF   ++ + +E IP LS     F  +++ E   I+ W       W+ L   +F
Subjt:  ILTYQFLKKA--SYSDKDVVYIQGFPLNLVYFTFEKIPRLSNLDVGFERKLAKEGQPILTWECLETSDWRTLNIDIF

XP_024031030.1 uncharacterized protein LOC21394043 [Morus notabilis]1.4e-1530.86Show/hide
Query:  MTRLKGHKFPELNLEERKENGLKNAFFRHDELIARRDIERTFKALCNEEDSLKEKLVNLYILEAFLIPKQQHNHINLLHLDILDNEEIFKDYPWGRLSHI
        +T L    +P +  ++  E+  K  FFR  + + R  +   F+A     D    KL  LY LE+ LIPK+  N+I+  HL ++DN E+F +YPWGRLS+ 
Subjt:  MTRLKGHKFPELNLEERKENGLKNAFFRHDELIARRDIERTFKALCNEEDSLKEKLVNLYILEAFLIPKQQHNHINLLHLDILDNEEIFKDYPWGRLSHI

Query:  LTYQFLKKASYSDKDVVY-IQGFPLNLVYFTFEKIPRLSNLDVGFERKLAKEGQPILTWECLETSDWRTLNIDIF
        +T  ++K++  S +   Y I GFP  ++ + +E IP L   ++   +++      I+ WE  +   +R +   +F
Subjt:  LTYQFLKKASYSDKDVVY-IQGFPLNLVYFTFEKIPRLSNLDVGFERKLAKEGQPILTWECLETSDWRTLNIDIF

XP_038891747.1 pescadillo homolog [Benincasa hispida]1.8e-1847.31Show/hide
Query:  ILDNEEIFKDYPWGRLSHILTYQFLKKASYSDKDVVYIQGFPLNLVYFTFEKIPRLSNLDVGFERKLAKEGQPILTWECLETSDWRTLNIDIF
        +LD+EE F+ YPWGR+S  LT +F KK   +    +++QGFPL LVY+ FE IPRLSN  +GF R++  +G  +  WE  E +DW+ +N +IF
Subjt:  ILDNEEIFKDYPWGRLSHILTYQFLKKASYSDKDVVYIQGFPLNLVYFTFEKIPRLSNLDVGFERKLAKEGQPILTWECLETSDWRTLNIDIF

TrEMBL top hitse value%identityAlignment
A0A5A7T9I0 DNA-directed RNA polymerase I subunit RPA1-like2.3e-4077.36Show/hide
Query:  YILEAFLIPKQQHNHINLLHLDILDNEEIFKDYPWGRLSHILTYQFLKKASYSDKDVVYIQGFPLNLVYFTFEKIPRLSNLDVGFERKLAKEGQPILTWE
        ++ +A    K QHNHINLLHLDIL+NEEIFK YPWGRLS+ILTYQFLKKASY+DKDVVY+QGFPL LVY+  EKIPR SNLDVGF RKLA EG PI+TWE
Subjt:  YILEAFLIPKQQHNHINLLHLDILDNEEIFKDYPWGRLSHILTYQFLKKASYSDKDVVYIQGFPLNLVYFTFEKIPRLSNLDVGFERKLAKEGQPILTWE

Query:  CLETSD
        CL+TSD
Subjt:  CLETSD

A0A5A7U6E1 Protein Ycf2-like2.4e-1328.98Show/hide
Query:  MTRLKGHKFPELNLEERKENG-LKNAFFRHDELIARRDIERTFKALCNEEDSLKEKLVNLYILEAFLIPKQQHNHINLLHLDILDNEEIFKDYPWGRLSH
        +T LK H+ P +N ++ K  G LK  +F + + + R+ +   F       D  + K+  LY LE+FLIPKQ+   ++  H+ ++D++E+F  YPWGR++ 
Subjt:  MTRLKGHKFPELNLEERKENG-LKNAFFRHDELIARRDIERTFKALCNEEDSLKEKLVNLYILEAFLIPKQQHNHINLLHLDILDNEEIFKDYPWGRLSH

Query:  ILTYQFLKKASYSDKDV-VYIQGFPLNLVYFTFEKIPRLSNLDVGFERKLAKEGQPILTWECLETSDWRTLNIDIF
         L   F+ +   S     + I GF   ++ + +E  P LS     F  ++  E   I+ W       W+ L   +F
Subjt:  ILTYQFLKKASYSDKDV-VYIQGFPLNLVYFTFEKIPRLSNLDVGFERKLAKEGQPILTWECLETSDWRTLNIDIF

A0A5D3CEX9 Protein Ycf2-like3.7e-1429.38Show/hide
Query:  MTRLKGHKFPELNLEERKENG-LKNAFFRHDELIARRDIERTFKALCNEEDSLKEKLVNLYILEAFLIPKQQHNHINLLHLDILDNEEIFKDYPWGRLSH
        +T L+ H+ P +N E+ K  G LK  +F + + + R+ +   F       D  + K+  LY LE+FLIPKQ+   ++  H+ ++D++E+F  YPWGR++ 
Subjt:  MTRLKGHKFPELNLEERKENG-LKNAFFRHDELIARRDIERTFKALCNEEDSLKEKLVNLYILEAFLIPKQQHNHINLLHLDILDNEEIFKDYPWGRLSH

Query:  ILTYQFLKKA--SYSDKDVVYIQGFPLNLVYFTFEKIPRLSNLDVGFERKLAKEGQPILTWECLETSDWRTLNIDIF
         L   F+ +A  S     +    GF   ++ + +E IP LS     F  +++ E   I+ W       W+ L   +F
Subjt:  ILTYQFLKKA--SYSDKDVVYIQGFPLNLVYFTFEKIPRLSNLDVGFERKLAKEGQPILTWECLETSDWRTLNIDIF

A0A6J1BX50 uncharacterized protein LOC1110055242.4e-1330.29Show/hide
Query:  MTRLKGHKFPELNLEERKENGLKNAFFRHDELIARRDIERTFKALCNEEDSLKEKLVNLYILEAFLIPKQQHNHINLLHLDILDNEEIFKDYPWGRLSHI
        +T +   + P +++ + +       +F  +  I R  +   F  +    D    K+  LYILE FL+ KQ    IN  +  ++D++E F+ YPWGR+S+ 
Subjt:  MTRLKGHKFPELNLEERKENGLKNAFFRHDELIARRDIERTFKALCNEEDSLKEKLVNLYILEAFLIPKQQHNHINLLHLDILDNEEIFKDYPWGRLSHI

Query:  LTYQFLKKASYS-DKDVVYIQGFPLNLVYFTFEKIPRLSNLDVGFERKLAKEGQPILTWECLETSDWRTLNIDIF
        +T  F+KKA  S D   + I GFP  L+ + +E IP LS     F  K++     +  W      +WR L+  IF
Subjt:  LTYQFLKKASYS-DKDVVYIQGFPLNLVYFTFEKIPRLSNLDVGFERKLAKEGQPILTWECLETSDWRTLNIDIF

W9SF50 DUF1985 domain-containing protein6.7e-1630.86Show/hide
Query:  MTRLKGHKFPELNLEERKENGLKNAFFRHDELIARRDIERTFKALCNEEDSLKEKLVNLYILEAFLIPKQQHNHINLLHLDILDNEEIFKDYPWGRLSHI
        +T L    +P +  ++  E+  K  FFR  + + R  +   F+A     D    KL  LY LE+ LIPK+  N+I+  HL ++DN E+F +YPWGRLS+ 
Subjt:  MTRLKGHKFPELNLEERKENGLKNAFFRHDELIARRDIERTFKALCNEEDSLKEKLVNLYILEAFLIPKQQHNHINLLHLDILDNEEIFKDYPWGRLSHI

Query:  LTYQFLKKASYSDKDVVY-IQGFPLNLVYFTFEKIPRLSNLDVGFERKLAKEGQPILTWECLETSDWRTLNIDIF
        +T  ++K++  S +   Y I GFP  ++ + +E IP L   ++   +++      I+ WE  +   +R +   +F
Subjt:  LTYQFLKKASYSDKDVVY-IQGFPLNLVYFTFEKIPRLSNLDVGFERKLAKEGQPILTWECLETSDWRTLNIDIF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTAGACTAAAAGGTCACAAATTCCCTGAGTTAAATCTAGAAGAAAGAAAAGAAAATGGTCTAAAAAATGCATTTTTCCGTCATGATGAGTTGATAGCAAGAAGAGA
TATAGAAAGAACTTTCAAAGCATTGTGCAATGAGGAAGACTCATTGAAAGAAAAACTAGTTAACCTCTATATCTTAGAAGCATTTTTAATTCCCAAACAGCAACACAACC
ACATAAATCTCCTACATCTAGACATATTGGATAATGAAGAAATCTTCAAAGACTATCCATGGGGGAGGTTATCACACATCCTAACATATCAGTTTTTGAAAAAAGCATCC
TACAGTGACAAGGATGTTGTATACATTCAAGGATTTCCCCTAAATTTAGTCTATTTTACTTTTGAGAAAATACCAAGACTTTCCAATTTAGATGTTGGGTTTGAAAGAAA
GCTTGCAAAGGAAGGGCAACCAATTTTAACATGGGAATGTTTGGAAACAAGTGACTGGAGGACTCTAAACATCGACATTTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTAGACTAAAAGGTCACAAATTCCCTGAGTTAAATCTAGAAGAAAGAAAAGAAAATGGTCTAAAAAATGCATTTTTCCGTCATGATGAGTTGATAGCAAGAAGAGA
TATAGAAAGAACTTTCAAAGCATTGTGCAATGAGGAAGACTCATTGAAAGAAAAACTAGTTAACCTCTATATCTTAGAAGCATTTTTAATTCCCAAACAGCAACACAACC
ACATAAATCTCCTACATCTAGACATATTGGATAATGAAGAAATCTTCAAAGACTATCCATGGGGGAGGTTATCACACATCCTAACATATCAGTTTTTGAAAAAAGCATCC
TACAGTGACAAGGATGTTGTATACATTCAAGGATTTCCCCTAAATTTAGTCTATTTTACTTTTGAGAAAATACCAAGACTTTCCAATTTAGATGTTGGGTTTGAAAGAAA
GCTTGCAAAGGAAGGGCAACCAATTTTAACATGGGAATGTTTGGAAACAAGTGACTGGAGGACTCTAAACATCGACATTTTTTAA
Protein sequenceShow/hide protein sequence
MTRLKGHKFPELNLEERKENGLKNAFFRHDELIARRDIERTFKALCNEEDSLKEKLVNLYILEAFLIPKQQHNHINLLHLDILDNEEIFKDYPWGRLSHILTYQFLKKAS
YSDKDVVYIQGFPLNLVYFTFEKIPRLSNLDVGFERKLAKEGQPILTWECLETSDWRTLNIDIF