; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C033492 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C033492
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr08:31908749..31909744
RNA-Seq ExpressionMELO3C033492
SyntenyMELO3C033492
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045063.1 retrotransposon protein [Cucumis melo var. makuwa]2.1e-6498.51Show/hide
Query:  MRDGNEEFPPVYSQGIDLSQNNVRASQPSRASKGRIGSSVSKRKRVSQREVDVEGIHLALDQTNEQLRMIAEWSARPLANDNHVRTKLLLREMPELTSLD
        M DGNEEFPPVYSQGIDLS+NNVRASQPSRASKGRIGSSVSKRKRVSQREVDVEGIHLALDQTNEQLRMIAEWSARPLANDNHVRTKLLLREMPELTSLD
Subjt:  MRDGNEEFPPVYSQGIDLSQNNVRASQPSRASKGRIGSSVSKRKRVSQREVDVEGIHLALDQTNEQLRMIAEWSARPLANDNHVRTKLLLREMPELTSLD

Query:  RALLQRHLLSRMDDLRGFVLMPEDERERFCRVLL
        RALLQRHLLSRMDDLRGFVLMPEDERERFCRVLL
Subjt:  RALLQRHLLSRMDDLRGFVLMPEDERERFCRVLL

KAA0046234.1 retrotransposon protein [Cucumis melo var. makuwa]2.4e-5283.09Show/hide
Query:  MRDGNEEFPPVYSQGIDLSQNNVRASQPSRASKGRIGSSVSKRKRVSQREVDVEGIHLALDQTNEQLRMIAEWSARPLANDNHVRTKL--LLREMPELTS
        M DGNE+FPP+YSQGIDLSQ++VRAS+PSRAS+GR GSS SKRKR SQR+ DVE IHLALDQTNEQLR IAEW AR LANDNHVRT+   ++REMPELTS
Subjt:  MRDGNEEFPPVYSQGIDLSQNNVRASQPSRASKGRIGSSVSKRKRVSQREVDVEGIHLALDQTNEQLRMIAEWSARPLANDNHVRTKL--LLREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDERERFCRVLL
        LDRALLQRHLLSRMDDLRGFVLMPEDERE FCRVLL
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDERERFCRVLL

KAA0047011.1 retrotransposon protein [Cucumis melo var. makuwa]4.2e-5282.35Show/hide
Query:  MRDGNEEFPPVYSQGIDLSQNNVRASQPSRASKGRIGSSVSKRKRVSQREVDVEGIHLALDQTNEQLRMIAEWSARPLANDNHVRTKL--LLREMPELTS
        M DGN++FPPVYSQG+D+SQ++VRAS+PSRAS+GR GSS SKRKR SQR+ DVE IHLALDQTNEQLR IAEW AR LANDNHVRT+   +LREMPELTS
Subjt:  MRDGNEEFPPVYSQGIDLSQNNVRASQPSRASKGRIGSSVSKRKRVSQREVDVEGIHLALDQTNEQLRMIAEWSARPLANDNHVRTKL--LLREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDERERFCRVLL
        LDRALLQRHLLSRMDDLRGFVLMPEDERE FCRVLL
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDERERFCRVLL

KAA0058875.1 retrotransposon protein [Cucumis melo var. makuwa]8.4e-5383.09Show/hide
Query:  MRDGNEEFPPVYSQGIDLSQNNVRASQPSRASKGRIGSSVSKRKRVSQREVDVEGIHLALDQTNEQLRMIAEWSARPLANDNHVRTKL--LLREMPELTS
        M DGNE+FPPVYSQG+D+SQ++VRAS+PSRA +GR GSS SKRKR SQR+ DVE IHLALDQTNEQLR IAEW AR LANDNHVRT+   +LREMPELTS
Subjt:  MRDGNEEFPPVYSQGIDLSQNNVRASQPSRASKGRIGSSVSKRKRVSQREVDVEGIHLALDQTNEQLRMIAEWSARPLANDNHVRTKL--LLREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDERERFCRVLL
        LDRALLQRHLLSRMDDLRGFVLMPEDERERFCRVLL
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDERERFCRVLL

TYJ96264.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-65100Show/hide
Query:  MRDGNEEFPPVYSQGIDLSQNNVRASQPSRASKGRIGSSVSKRKRVSQREVDVEGIHLALDQTNEQLRMIAEWSARPLANDNHVRTKLLLREMPELTSLD
        MRDGNEEFPPVYSQGIDLSQNNVRASQPSRASKGRIGSSVSKRKRVSQREVDVEGIHLALDQTNEQLRMIAEWSARPLANDNHVRTKLLLREMPELTSLD
Subjt:  MRDGNEEFPPVYSQGIDLSQNNVRASQPSRASKGRIGSSVSKRKRVSQREVDVEGIHLALDQTNEQLRMIAEWSARPLANDNHVRTKLLLREMPELTSLD

Query:  RALLQRHLLSRMDDLRGFVLMPEDERERFCRVLL
        RALLQRHLLSRMDDLRGFVLMPEDERERFCRVLL
Subjt:  RALLQRHLLSRMDDLRGFVLMPEDERERFCRVLL

TrEMBL top hitse value%identityAlignment
A0A5A7TNG9 Retrotransposon protein1.0e-6498.51Show/hide
Query:  MRDGNEEFPPVYSQGIDLSQNNVRASQPSRASKGRIGSSVSKRKRVSQREVDVEGIHLALDQTNEQLRMIAEWSARPLANDNHVRTKLLLREMPELTSLD
        M DGNEEFPPVYSQGIDLS+NNVRASQPSRASKGRIGSSVSKRKRVSQREVDVEGIHLALDQTNEQLRMIAEWSARPLANDNHVRTKLLLREMPELTSLD
Subjt:  MRDGNEEFPPVYSQGIDLSQNNVRASQPSRASKGRIGSSVSKRKRVSQREVDVEGIHLALDQTNEQLRMIAEWSARPLANDNHVRTKLLLREMPELTSLD

Query:  RALLQRHLLSRMDDLRGFVLMPEDERERFCRVLL
        RALLQRHLLSRMDDLRGFVLMPEDERERFCRVLL
Subjt:  RALLQRHLLSRMDDLRGFVLMPEDERERFCRVLL

A0A5A7TT52 Retrotransposon protein1.2e-5283.09Show/hide
Query:  MRDGNEEFPPVYSQGIDLSQNNVRASQPSRASKGRIGSSVSKRKRVSQREVDVEGIHLALDQTNEQLRMIAEWSARPLANDNHVRTKL--LLREMPELTS
        M DGNE+FPP+YSQGIDLSQ++VRAS+PSRAS+GR GSS SKRKR SQR+ DVE IHLALDQTNEQLR IAEW AR LANDNHVRT+   ++REMPELTS
Subjt:  MRDGNEEFPPVYSQGIDLSQNNVRASQPSRASKGRIGSSVSKRKRVSQREVDVEGIHLALDQTNEQLRMIAEWSARPLANDNHVRTKL--LLREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDERERFCRVLL
        LDRALLQRHLLSRMDDLRGFVLMPEDERE FCRVLL
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDERERFCRVLL

A0A5A7UZ66 Retrotransposon protein4.1e-5383.09Show/hide
Query:  MRDGNEEFPPVYSQGIDLSQNNVRASQPSRASKGRIGSSVSKRKRVSQREVDVEGIHLALDQTNEQLRMIAEWSARPLANDNHVRTKL--LLREMPELTS
        M DGNE+FPPVYSQG+D+SQ++VRAS+PSRA +GR GSS SKRKR SQR+ DVE IHLALDQTNEQLR IAEW AR LANDNHVRT+   +LREMPELTS
Subjt:  MRDGNEEFPPVYSQGIDLSQNNVRASQPSRASKGRIGSSVSKRKRVSQREVDVEGIHLALDQTNEQLRMIAEWSARPLANDNHVRTKL--LLREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDERERFCRVLL
        LDRALLQRHLLSRMDDLRGFVLMPEDERERFCRVLL
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDERERFCRVLL

A0A5A7VHE7 Retrotransposon protein2.0e-5282.35Show/hide
Query:  MRDGNEEFPPVYSQGIDLSQNNVRASQPSRASKGRIGSSVSKRKRVSQREVDVEGIHLALDQTNEQLRMIAEWSARPLANDNHVRTKL--LLREMPELTS
        M DGNE+FPPVYSQG+D+SQ+NVRAS+PSRAS+GR GSS SKRKR SQR+ ++E IHLALDQTNEQLR IAEW AR LANDNHVRT+   +LREMPELTS
Subjt:  MRDGNEEFPPVYSQGIDLSQNNVRASQPSRASKGRIGSSVSKRKRVSQREVDVEGIHLALDQTNEQLRMIAEWSARPLANDNHVRTKL--LLREMPELTS

Query:  LDRALLQRHLLSRMDDLRGFVLMPEDERERFCRVLL
        LDRALLQRHLLSRMDDLRGFVLMPEDERE FCRVLL
Subjt:  LDRALLQRHLLSRMDDLRGFVLMPEDERERFCRVLL

A0A5D3BBE5 Retrotransposon protein5.5e-66100Show/hide
Query:  MRDGNEEFPPVYSQGIDLSQNNVRASQPSRASKGRIGSSVSKRKRVSQREVDVEGIHLALDQTNEQLRMIAEWSARPLANDNHVRTKLLLREMPELTSLD
        MRDGNEEFPPVYSQGIDLSQNNVRASQPSRASKGRIGSSVSKRKRVSQREVDVEGIHLALDQTNEQLRMIAEWSARPLANDNHVRTKLLLREMPELTSLD
Subjt:  MRDGNEEFPPVYSQGIDLSQNNVRASQPSRASKGRIGSSVSKRKRVSQREVDVEGIHLALDQTNEQLRMIAEWSARPLANDNHVRTKLLLREMPELTSLD

Query:  RALLQRHLLSRMDDLRGFVLMPEDERERFCRVLL
        RALLQRHLLSRMDDLRGFVLMPEDERERFCRVLL
Subjt:  RALLQRHLLSRMDDLRGFVLMPEDERERFCRVLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGATGGAAACGAGGAGTTCCCGCCCGTGTATAGCCAAGGGATTGACCTGTCGCAGAACAATGTACGCGCGTCACAACCTTCTCGCGCTTCAAAGGGTAGG
ATCGGATCGAGTGTGTCCAAGAGGAAGAGGGTAAGTCAGCGGGAGGTGGATGTTGAAGGCATACATCTGGCGCTTGACCAAACAAACGAGCAACTCAGGATGATT
GCGGAATGGTCTGCACGCCCCCTTGCCAATGACAACCATGTGCGCACGAAATTGTTATTGCGTGAGATGCCAGAACTAACGAGTTTGGATAGGGCGCTATTACAA
AGGCATCTTCTGTCTCGTATGGACGACCTTCGAGGTTTCGTACTTATGCCTGAGGATGAGAGAGAGAGATTTTGTAGAGTCCTCCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAATCTCAAACCGTGCCCCGAGACATGTCTGGACGGAGGAGGAGGAGGGCACTCTTGTGGAGTGTTTAATGGAGTTGGTGTCAATGGGGGGATGGAAATCG
GATAATGGTACGTTTTGGCTAGGTTACCTGACCCAGTTGGTACGCATGATGGCGGAGAAACTACCTGGACGTCAGGTCTGCGCAACGACTGTAATTAACTGTAGA
ACAAAGACACTGAAGCAGACATTCCAGGCCATCACCGAAATTTTGAGTGGAACGATGAAGAGAAATGTATCATTGCGGAGAAAGAATTATTTGATAATTGGGTTA
GGTCGCATCTTGCAGTGAAGGAACTCCAGAACAAATCGTTTCCATATTACGACGAACTTACATATGTGTTCAGTCGCGATAGGACGACAGATCGGTTCGCTGAGA
CATTCACCGACGTGGGGTCTAACGAGCCTGGGTGGTATGATGGATTTGATATGAGGGATGGAAACGAGGAGTTCCCGCCCGTGTATAGCCAAGGGATTGACCTGT
CGCAGAACAATGTACGCGCGTCACAACCTTCTCGCGCTTCAAAGGGTAGGATCGGATCGAGTGTGTCCAAGAGGAAGAGGGTAAGTCAGCGGGAGGTGGATGTTG
AAGGCATACATCTGGCGCTTGACCAAACAAACGAGCAACTCAGGATGATTGCGGAATGGTCTGCACGCCCCCTTGCCAATGACAACCATGTGCGCACGAAATTGT
TATTGCGTGAGATGCCAGAACTAACGAGTTTGGATAGGGCGCTATTACAAAGGCATCTTCTGTCTCGTATGGACGACCTTCGAGGTTTCGTACTTATGCCTGAGG
ATGAGAGAGAGAGATTTTGTAGAGTCCTCCTATGA
Protein sequenceShow/hide protein sequence
MRDGNEEFPPVYSQGIDLSQNNVRASQPSRASKGRIGSSVSKRKRVSQREVDVEGIHLALDQTNEQLRMIAEWSARPLANDNHVRTKLLLREMPELTSLDRALLQ
RHLLSRMDDLRGFVLMPEDERERFCRVLL