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MELO3C034128 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C034128
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionDNA-directed RNA polymerase subunit 10-like protein
Genome locationchr10:3421588..3422456
RNA-Seq ExpressionMELO3C034128
SyntenyMELO3C034128
Gene Ontology termsGO:0006360 - transcription by RNA polymerase I (biological process)
GO:0006366 - transcription by RNA polymerase II (biological process)
GO:0042797 - tRNA transcription by RNA polymerase III (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000268 - DNA-directed RNA polymerase, subunit N/Rpb10
IPR023580 - RNA polymerase subunit RPB10


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON41415.1 DNA-directed RNA polymerase, subunit N/Rpb [Parasponia andersonii]3.6e-2480.88Show/hide
Query:  TQIQEDDNSGAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        +++Q ++  G VIGNKWDTYLDLLQADY EG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYNT+DKSE
Subjt:  TQIQEDDNSGAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

XP_004135479.1 DNA-directed RNA polymerase subunit 10-like protein [Cucumis sativus]1.1e-2595.08Show/hide
Query:  GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
        G VIGNKWDTYLDLLQADYPEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI+
Subjt:  GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV

XP_008446194.1 PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Cucumis melo]1.7e-2698.36Show/hide
Query:  GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
        G VIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
Subjt:  GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV

XP_022151052.1 DNA-directed RNA polymerase subunit 10-like protein [Momordica charantia]7.2e-2593.44Show/hide
Query:  GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
        G VIGNKWD+YL+LLQADYPEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
Subjt:  GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV

XP_038893151.1 DNA-directed RNA polymerase subunit 10-like protein [Benincasa hispida]3.2e-2593.44Show/hide
Query:  GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
        G VIGNKWDTYL+LLQADYPEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI+
Subjt:  GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV

TrEMBL top hitse value%identityAlignment
A0A0A0KQ80 Uncharacterized protein5.3e-2695.08Show/hide
Query:  GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
        G VIGNKWDTYLDLLQADYPEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEI+
Subjt:  GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV

A0A1S3BEG8 DNA-directed RNA polymerase subunit 10-like protein8.2e-2798.36Show/hide
Query:  GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
        G VIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
Subjt:  GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV

A0A2P5AY08 DNA-directed RNA polymerase, subunit N/Rpb1.7e-2480.88Show/hide
Query:  TQIQEDDNSGAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        +++Q ++  G VIGNKWDTYLDLLQADY EG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYNT+DKSE
Subjt:  TQIQEDDNSGAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

A0A5A7SYN0 DNA-directed RNA polymerase subunit 10-like protein8.2e-2798.36Show/hide
Query:  GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
        G VIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
Subjt:  GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV

A0A6J1DCG7 DNA-directed RNA polymerase subunit 10-like protein3.5e-2593.44Show/hide
Query:  GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
        G VIGNKWD+YL+LLQADYPEGEALD LGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV
Subjt:  GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV

SwissProt top hitse value%identityAlignment
Q32P78 DNA-directed RNA polymerases I, II, and III subunit RPABC56.1e-1970.18Show/hide
Query:  GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDK
        G ++GNKW+ YL LLQA+Y EG+ALD LGL RYCCRRML+ HVDLIEKLLNY  ++K
Subjt:  GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDK

Q39290 DNA-directed RNA polymerases I, II, and III subunit RPABC51.4e-2383.05Show/hide
Query:  GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        G VIGNKWD YLDLLQ DY EG+ALD L LVRYCCRRMLMTHVDLIEKLLNYNT++KS+
Subjt:  GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

Q8LFJ6 DNA-directed RNA polymerases II, IV and V subunit 103.1e-2383.05Show/hide
Query:  GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        G VIGNKWD YLDLLQ DY EG+ALD L LVRYCCRRMLMTHVDLIEKLLNYNT++KS+
Subjt:  GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

Q9SYA6 DNA-directed RNA polymerase subunit 10-like protein2.6e-2588.14Show/hide
Query:  GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        G VIGNKWDTYL+LLQADY EG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYNTM+KS+
Subjt:  GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

Q9VC49 DNA-directed RNA polymerases I, II, and III subunit RPABC54.7e-1973.68Show/hide
Query:  GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDK
        G VIGNKW++YL LLQA+Y EG+ALD LGL RYCCRRML+ HVDLIEKLLNY  ++K
Subjt:  GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDK

Arabidopsis top hitse value%identityAlignment
AT1G11475.1 RNA polymerases N / 8 kDa subunit2.2e-2483.05Show/hide
Query:  GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        G VIGNKWD YLDLLQ DY EG+ALD L LVRYCCRRMLMTHVDLIEKLLNYNT++KS+
Subjt:  GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE

AT1G61700.1 RNA polymerases N / 8 kDa subunit1.8e-2688.14Show/hide
Query:  GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE
        G VIGNKWDTYL+LLQADY EG+ALD LGLVRYCCRRMLMTHVDLIEKLLNYNTM+KS+
Subjt:  GAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATTGGAGAACCAAACACAAATTCAAGAAGATGATAATTCCGGTGCGGTGATCGGTAACAAATGGGACACTTATCTCGACCTTCTACAAGCTGACTATCCA
GAAGGGGAGGCATTGGATACGTTAGGGTTAGTACGCTACTGTTGCAGGAGAATGCTTATGACTCATGTGGATCTCATTGAGAAGCTCTTGAACTACAACACCATG
GATAAGTCTGAAATCGTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAATTGGAGAACCAAACACAAATTCAAGAAGATGATAATTCCGGTGCGGTGATCGGTAACAAATGGGACACTTATCTCGACCTTCTACAAGCTGACTATCCA
GAAGGGGAGGCATTGGATACGTTAGGGTTAGTACGCTACTGTTGCAGGAGAATGCTTATGACTCATGTGGATCTCATTGAGAAGCTCTTGAACTACAACACCATG
GATAAGTCTGAAATCGTCTAAAGCCTAATTACGGGGAATTGCTTTGCCAACACAGTGAATTCTACAATGCATTGTTTGGATTTTGTGAAGATTGGTTTTACCTTT
TCTTTTTAGAGCTAATAAAGTCTGGTAGCAAAATTAATTTAGCTTTCACAAATGTTTCCAAAATTCATTTATAGTAGAAAGATGAAAATTGAGATACGAATAGCC
TAAGATGAAAATTTAAAGTACCATATGTTGTTTT
Protein sequenceShow/hide protein sequence
MKLENQTQIQEDDNSGAVIGNKWDTYLDLLQADYPEGEALDTLGLVRYCCRRMLMTHVDLIEKLLNYNTMDKSEIV