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MELO3C034401 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C034401
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
Description40S ribosomal protein S13
Genome locationchr07:10309609..10309990
RNA-Seq ExpressionMELO3C034401
SyntenyMELO3C034401
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025324.1 40S ribosomal protein S13 [Cucumis melo var. makuwa]2.7e-1987.5Show/hide
Query:  PPFLSPPPFLSSPPFLSPLRLLFCSPTLGIKFGRISLLLKKLIRSSAFTATAFTATSVHKKHPL
        PPFLSPPPFLSSPPFLSP RLLFCSPTLGIKF RISLLLKKLIRSS FTATAFTAT   + HPL
Subjt:  PPFLSPPPFLSSPPFLSPLRLLFCSPTLGIKFGRISLLLKKLIRSSAFTATAFTATSVHKKHPL
KAA0043612.1 40S ribosomal protein S13 [Cucumis melo var. makuwa]1.2e-0670.83Show/hide
Query:  LFCSPTLGIKFGRISLLLKKLIRSS-----AFTATAFTATSVHKKHPL
        +FCSPTLGIKFGRISLLLKK +RSS      FTATAFTAT   + HPL
Subjt:  LFCSPTLGIKFGRISLLLKKLIRSS-----AFTATAFTATSVHKKHPL
KAA0056184.1 40S ribosomal protein S13-like [Cucumis melo var. makuwa]1.8e-1578.26Show/hide
Query:  PPFLSPPPFLSSPPFLSPLRLLFCSPTLGIKFGRISLLLKKLIRSSA-----FTATAFTATSVHKKHPL
        PPFLSPPP LSSPPFL P RLLF SPTLGIKFGRISLLLKKLIRSSA     FTATAFTA    + HPL
Subjt:  PPFLSPPPFLSSPPFLSPLRLLFCSPTLGIKFGRISLLLKKLIRSSA-----FTATAFTATSVHKKHPL
TYK06449.1 40S ribosomal protein S13 [Cucumis melo var. makuwa]2.7e-1987.5Show/hide
Query:  PPFLSPPPFLSSPPFLSPLRLLFCSPTLGIKFGRISLLLKKLIRSSAFTATAFTATSVHKKHPL
        PPFLSPPPFLSSPPFLSP RLLFCSPTLGIKF RISLLLKKLIRSS FTATAFTAT   + HPL
Subjt:  PPFLSPPPFLSSPPFLSPLRLLFCSPTLGIKFGRISLLLKKLIRSSAFTATAFTATSVHKKHPL
TrEMBL top hitse value%identityAlignment
A0A5A7SI60 40S ribosomal protein S131.3e-1987.5Show/hide
Query:  PPFLSPPPFLSSPPFLSPLRLLFCSPTLGIKFGRISLLLKKLIRSSAFTATAFTATSVHKKHPL
        PPFLSPPPFLSSPPFLSP RLLFCSPTLGIKF RISLLLKKLIRSS FTATAFTAT   + HPL
Subjt:  PPFLSPPPFLSSPPFLSPLRLLFCSPTLGIKFGRISLLLKKLIRSSAFTATAFTATSVHKKHPL
A0A5A7TK12 40S ribosomal protein S135.7e-0770.83Show/hide
Query:  LFCSPTLGIKFGRISLLLKKLIRSS-----AFTATAFTATSVHKKHPL
        +FCSPTLGIKFGRISLLLKK +RSS      FTATAFTAT   + HPL
Subjt:  LFCSPTLGIKFGRISLLLKKLIRSS-----AFTATAFTATSVHKKHPL
A0A5A7ULW0 40S ribosomal protein S13-like8.8e-1678.26Show/hide
Query:  PPFLSPPPFLSSPPFLSPLRLLFCSPTLGIKFGRISLLLKKLIRSSA-----FTATAFTATSVHKKHPL
        PPFLSPPP LSSPPFL P RLLF SPTLGIKFGRISLLLKKLIRSSA     FTATAFTA    + HPL
Subjt:  PPFLSPPPFLSSPPFLSPLRLLFCSPTLGIKFGRISLLLKKLIRSSA-----FTATAFTATSVHKKHPL
A0A5D3C7W5 40S ribosomal protein S131.3e-1987.5Show/hide
Query:  PPFLSPPPFLSSPPFLSPLRLLFCSPTLGIKFGRISLLLKKLIRSSAFTATAFTATSVHKKHPL
        PPFLSPPPFLSSPPFLSP RLLFCSPTLGIKF RISLLLKKLIRSS FTATAFTAT   + HPL
Subjt:  PPFLSPPPFLSSPPFLSPLRLLFCSPTLGIKFGRISLLLKKLIRSSAFTATAFTATSVHKKHPL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCACCATTTTTATCGCCGCCACCATTTTTATCGTCGCCACCATTTCTATCGCCGCTACGATTGTTGTTCTGTTCGCCCACCCTTGGAATCAAATTCGGCCGC
ATTTCTCTCCTTCTAAAGAAACTCATCCGCTCGTCCGCGTTCACAGCAACCGCGTTCACAGCAACCAGCGTTCACAAAAAACATCCTCTCACATTCTCATTCTCC
CTCTCACATTCACAGCAACGACGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCACCATTTTTATCGCCGCCACCATTTTTATCGTCGCCACCATTTCTATCGCCGCTACGATTGTTGTTCTGTTCGCCCACCCTTGGAATCAAATTCGGCCGC
ATTTCTCTCCTTCTAAAGAAACTCATCCGCTCGTCCGCGTTCACAGCAACCGCGTTCACAGCAACCAGCGTTCACAAAAAACATCCTCTCACATTCTCATTCTCC
CTCTCACATTCACAGCAACGACGGTAAAATTTCCATCTTCTTTCAAGTGGTCGAGATTTTAATTTGAGGTTTTTAGCATGTTTTAATGTAT
Protein sequenceShow/hide protein sequence
MPPFLSPPPFLSSPPFLSPLRLLFCSPTLGIKFGRISLLLKKLIRSSAFTATAFTATSVHKKHPLTFSFSLSHSQQRR