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MELO3C034514 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C034514
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr10:22235151..22241132
RNA-Seq ExpressionMELO3C034514
SyntenyMELO3C034514
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036728.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.0e-0768.18Show/hide
Query:  STSQFGSDTTCHNRNLSNTIVRHLFCSVNKSAVQYSKSTDKLAI
        ST +     TCHN NLSNTIVRHLFCS+NKS VQYS+  DKLA+
Subjt:  STSQFGSDTTCHNRNLSNTIVRHLFCSVNKSAVQYSKSTDKLAI

KAA0040303.1 uncharacterized protein E6C27_scaffold460G00030 [Cucumis melo var. makuwa]9.6e-0560.42Show/hide
Query:  CHNRNLSNTIVRHLFCSVNKSAVQYSKSTDKLAIKRFRGIRAYDHRLN
        CHN N SNTIV HLFCSVNKS VQYSKST+KL +K  + +   ++ L+
Subjt:  CHNRNLSNTIVRHLFCSVNKSAVQYSKSTDKLAIKRFRGIRAYDHRLN

KAA0048746.1 uncharacterized protein E6C27_scaffold43G00480 [Cucumis melo var. makuwa]2.3e-0665.38Show/hide
Query:  VLLSTSQFGSDTTCHNRNLSNTIVRHLFCSVNKSAVQYSKSTDKLAIKRFRG
        ++ ++S+ GSDT+CHNRN SNTIV HLF SVNKSAVQ  KS DKLA   F G
Subjt:  VLLSTSQFGSDTTCHNRNLSNTIVRHLFCSVNKSAVQYSKSTDKLAIKRFRG

TYK07339.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.7e-0663.64Show/hide
Query:  STSQFGSDTTCHNRNLSNTIVRHLFCSVNKSAVQYSKSTDKLAI
        ST +     TCHN NLSNTI +HLFC +NKSAVQYS+  DKLA+
Subjt:  STSQFGSDTTCHNRNLSNTIVRHLFCSVNKSAVQYSKSTDKLAI

TYK31589.1 uncharacterized protein E5676_scaffold172G00900 [Cucumis melo var. makuwa]2.3e-0665.38Show/hide
Query:  VLLSTSQFGSDTTCHNRNLSNTIVRHLFCSVNKSAVQYSKSTDKLAIKRFRG
        ++ ++S+ GSDT+CHNRN SNTIV HLF SVNKSAVQ  KS DKLA   F G
Subjt:  VLLSTSQFGSDTTCHNRNLSNTIVRHLFCSVNKSAVQYSKSTDKLAIKRFRG

TrEMBL top hitse value%identityAlignment
A0A0A0L3L4 Uncharacterized protein1.9e-0636.92Show/hide
Query:  EEIPAINRNPFEGKKVWL-------VLYFLTDRPTPRRRKKSITSAKIQIQKEKSNRRAWGKRQMIRGGKRNSGNKEPEVNPVCSPKIPSIDSSLNELKP
        E+IPAINRNPFEGKK            Y L ++    +R+ S +    Q +  K  +  W K       ++NSGNKE EVN  CSPKIPS++SSLNEL  
Subjt:  EEIPAINRNPFEGKKVWL-------VLYFLTDRPTPRRRKKSITSAKIQIQKEKSNRRAWGKRQMIRGGKRNSGNKEPEVNPVCSPKIPSIDSSLNELKP

Query:  PIRKNPREKAEDLEKAPEKRRKNMAGGDQR
               ++    ++A +  RK    G+++
Subjt:  PIRKNPREKAEDLEKAPEKRRKNMAGGDQR

A0A0A0LCB6 Uncharacterized protein1.9e-0636.92Show/hide
Query:  EEIPAINRNPFEGKK-----VWLVLYFLTDRPTPRRRKKSITSAKIQIQKEKSNRRAWGKRQMIRGGKRNSGNKEPEVNPVCSPKIPSIDSSLNELKPPI
        E+IPAINRNPFEGKK      W   + L        ++ +       + +E+  R     + + R  K+NSGNKE EVN VCSPKIPS++SSLNEL    
Subjt:  EEIPAINRNPFEGKK-----VWLVLYFLTDRPTPRRRKKSITSAKIQIQKEKSNRRAWGKRQMIRGGKRNSGNKEPEVNPVCSPKIPSIDSSLNELKPPI

Query:  RKNPREKAEDLEKAPEKRRKNMAGGDQRQN
             ++    ++A +  RK   GG++  +
Subjt:  RKNPREKAEDLEKAPEKRRKNMAGGDQRQN

A0A5A7T1U2 Ty3-gypsy retrotransposon protein2.9e-0768.18Show/hide
Query:  STSQFGSDTTCHNRNLSNTIVRHLFCSVNKSAVQYSKSTDKLAI
        ST +     TCHN NLSNTIVRHLFCS+NKS VQYS+  DKLA+
Subjt:  STSQFGSDTTCHNRNLSNTIVRHLFCSVNKSAVQYSKSTDKLAI

A0A5A7U3D7 Uncharacterized protein1.1e-0665.38Show/hide
Query:  VLLSTSQFGSDTTCHNRNLSNTIVRHLFCSVNKSAVQYSKSTDKLAIKRFRG
        ++ ++S+ GSDT+CHNRN SNTIV HLF SVNKSAVQ  KS DKLA   F G
Subjt:  VLLSTSQFGSDTTCHNRNLSNTIVRHLFCSVNKSAVQYSKSTDKLAIKRFRG

A0A5D3E6W2 Uncharacterized protein1.1e-0665.38Show/hide
Query:  VLLSTSQFGSDTTCHNRNLSNTIVRHLFCSVNKSAVQYSKSTDKLAIKRFRG
        ++ ++S+ GSDT+CHNRN SNTIV HLF SVNKSAVQ  KS DKLA   F G
Subjt:  VLLSTSQFGSDTTCHNRNLSNTIVRHLFCSVNKSAVQYSKSTDKLAIKRFRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCTTTCTACCAGATCTCCAAAAGCCGGAACCCCTGTGGCATTCCTCCCTACAACATGACTCGCTGAAGACAGAATCATGGCCTCCTCCAGCAAACTACCTG
AGTTTAAACTATGCAGATAAAGTAAAGGGTGTCGTGAGCAATTCTCAATCAAGCATAGAGGAAAAAATCAAATTTTGGGTGGAAGGCATTGGGTCTGAAGATCAG
ACAATTGCATTAAGGAAGACTTTTCTAACCTCGGGATATTATCACACGGGACTCCAAGAAACTGACGGAGTCGGGAACTTCAGCTTGGTAGAGCATCTGCTCCTC
CAGCTCTACCAGTCGGTCTCTCTGGGCCTTGCCCGATGGATTTGCCGACGACATATTTCGGTGTTATTATCAACTAGTCAATTTGGCTCTGATACCACTTGTCAC
AATCGTAACCTTTCAAATACGATTGTGCGGCACTTGTTCTGCTCGGTGAACAAGTCAGCCGTTCAATATTCGAAATCCACGGACAAACTCGCGATAAAGCGATTT
AGGGGTATTCGAGCATACGACCATAGATTAAATGCAGTAGCCTTGGAGGAGGAAATTCCGGCAATCAATAGAAACCCTTTTGAAGGGAAAAAAGTATGGCTGGTG
CTGTACTTTCTGACCGACCGGCCTACTCCTCGCAGGAGAAAAAAGAGCATAACAAGCGCCAAAATTCAAATTCAGAAGGAGAAGAGCAACAGGCGTGCGTGGGGA
AAGAGGCAAATGATTCGTGGAGGAAAGAGAAACAGTGGAAATAAAGAACCTGAAGTTAATCCTGTTTGTTCTCCCAAAATTCCATCTATAGACAGCTCCCTAAAT
GAATTAAAGCCGCCAATAAGAAAGAATCCAAGAGAGAAAGCAGAAGATCTGGAAAAAGCACCAGAAAAAAGAAGAAAAAACATGGCCGGCGGTGACCAGCGACAG
AACACGGTGAATGGCAACGGTGACCGACGGCACACGATGGCAATGGCTGCGGACTTGACCAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGACCTTTCTACCAGATCTCCAAAAGCCGGAACCCCTGTGGCATTCCTCCCTACAACATGACTCGCTGAAGACAGAATCATGGCCTCCTCCAGCAAACTACCTG
AGTTTAAACTATGCAGATAAAGTAAAGGGTGTCGTGAGCAATTCTCAATCAAGCATAGAGGAAAAAATCAAATTTTGGGTGGAAGGCATTGGGTCTGAAGATCAG
ACAATTGCATTAAGGAAGACTTTTCTAACCTCGGGATATTATCACACGGGACTCCAAGAAACTGACGGAGTCGGGAACTTCAGCTTGGTAGAGCATCTGCTCCTC
CAGCTCTACCAGTCGGTCTCTCTGGGCCTTGCCCGATGGATTTGCCGACGACATATTTCGGTGTTATTATCAACTAGTCAATTTGGCTCTGATACCACTTGTCAC
AATCGTAACCTTTCAAATACGATTGTGCGGCACTTGTTCTGCTCGGTGAACAAGTCAGCCGTTCAATATTCGAAATCCACGGACAAACTCGCGATAAAGCGATTT
AGGGGTATTCGAGCATACGACCATAGATTAAATGCAGTAGCCTTGGAGGAGGAAATTCCGGCAATCAATAGAAACCCTTTTGAAGGGAAAAAAGTATGGCTGGTG
CTGTACTTTCTGACCGACCGGCCTACTCCTCGCAGGAGAAAAAAGAGCATAACAAGCGCCAAAATTCAAATTCAGAAGGAGAAGAGCAACAGGCGTGCGTGGGGA
AAGAGGCAAATGATTCGTGGAGGAAAGAGAAACAGTGGAAATAAAGAACCTGAAGTTAATCCTGTTTGTTCTCCCAAAATTCCATCTATAGACAGCTCCCTAAAT
GAATTAAAGCCGCCAATAAGAAAGAATCCAAGAGAGAAAGCAGAAGATCTGGAAAAAGCACCAGAAAAAAGAAGAAAAAACATGGCCGGCGGTGACCAGCGACAG
AACACGGTGAATGGCAACGGTGACCGACGGCACACGATGGCAATGGCTGCGGACTTGACCAGCTGA
Protein sequenceShow/hide protein sequence
MTFLPDLQKPEPLWHSSLQHDSLKTESWPPPANYLSLNYADKVKGVVSNSQSSIEEKIKFWVEGIGSEDQTIALRKTFLTSGYYHTGLQETDGVGNFSLVEHLLL
QLYQSVSLGLARWICRRHISVLLSTSQFGSDTTCHNRNLSNTIVRHLFCSVNKSAVQYSKSTDKLAIKRFRGIRAYDHRLNAVALEEEIPAINRNPFEGKKVWLV
LYFLTDRPTPRRRKKSITSAKIQIQKEKSNRRAWGKRQMIRGGKRNSGNKEPEVNPVCSPKIPSIDSSLNELKPPIRKNPREKAEDLEKAPEKRRKNMAGGDQRQ
NTVNGNGDRRHTMAMAADLTS