; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C034548 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C034548
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Genome locationchr10:25052618..25054949
RNA-Seq ExpressionMELO3C034548
SyntenyMELO3C034548
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063726.1 retrotransposon protein [Cucumis melo var. makuwa]3.4e-7071.2Show/hide
Query:  SHPATRDLLNRSFPHYDELSYIFGKDRATRARVESFTNVESNDPVRYETFAADATPDMEFQPMHSQGLDMSSDELMGIRTTQVSEGRHVLSGFKQKRGVQ
        SHPA + LLN+SF HYDELSY+FGKDRAT  RVESF NV SNDP  Y+ FA DA PD +F PM+SQGL+MS D+LMG RT +VSE R+V SG K+KR   
Subjt:  SHPATRDLLNRSFPHYDELSYIFGKDRATRARVESFTNVESNDPVRYETFAADATPDMEFQPMHSQGLDMSSDELMGIRTTQVSEGRHVLSGFKQKRGVQ

Query:  PADSGDVIRTTIEYKNEQLNHIVDWIVLQRQDASQTRQEVVQQLETIPELTLMDRCRLIRILMRNVDNMKAFLDVPDKMKFPYYNIILQEN
          DSGD++RT IEY+NEQLN I +W VLQRQ+ASQTRQEVV+QLE IPEL LMDRCRL+ ILM NVD+MKAFLDVPD MK+ YYNIILQEN
Subjt:  PADSGDVIRTTIEYKNEQLNHIVDWIVLQRQDASQTRQEVVQQLETIPELTLMDRCRLIRILMRNVDNMKAFLDVPDKMKFPYYNIILQEN

KAA0065390.1 retrotransposon protein [Cucumis melo var. makuwa]2.8e-10980.22Show/hide
Query:  MATTLRLLKHSWMKEEDAYLVEL-----------------------------------------------------SHPATRDLLNRSFPHYDELSYIFG
        MATTLRLLKHSWMKEEDAYLVEL                                                     SHPATRDLLNRSFPHYDELSYIFG
Subjt:  MATTLRLLKHSWMKEEDAYLVEL-----------------------------------------------------SHPATRDLLNRSFPHYDELSYIFG

Query:  KDRATRARVESFTNVESNDPVRYETFAADATPDMEFQPMHSQGLDMSSDELMGIRTTQVSEGRHVLSGFKQKRGVQPADSGDVIRTTIEYKNEQLNHIVD
        KDRATRARVESFTNVESNDPVRYETFAADATPDMEFQPMHSQGLDMSSDELMGIRTTQVSEGRHVLSGFKQKRGVQPADSGDVIRTTIEYKNEQLNHIVD
Subjt:  KDRATRARVESFTNVESNDPVRYETFAADATPDMEFQPMHSQGLDMSSDELMGIRTTQVSEGRHVLSGFKQKRGVQPADSGDVIRTTIEYKNEQLNHIVD

Query:  WIVLQRQDASQTRQEVVQQLETIPELTLMDRCRLIRILMRNVDNMKAFLDVPDKMKFPYYNIILQENS
        WIVLQRQDASQTRQEVVQQLETIPELTLMDRCRLIRILMRNVDNMKAFLDVPDKMKFPYYNIILQENS
Subjt:  WIVLQRQDASQTRQEVVQQLETIPELTLMDRCRLIRILMRNVDNMKAFLDVPDKMKFPYYNIILQENS

KAA0067287.1 retrotransposon protein [Cucumis melo var. makuwa]3.1e-6870.16Show/hide
Query:  SHPATRDLLNRSFPHYDELSYIFGKDRATRARVESFTNVESNDPVRYETFAADATPDMEFQPMHSQGLDMSSDELMGIRTTQVSEGRHVLSGFKQKRGVQ
        S+ A +DLLN+SFPHYDELSY+FGKDRATR + E+F +V  NDP +YE F ADA  D +FQPM++QGL+MS DELMG RTT+VSEGR V +  ++KRG Q
Subjt:  SHPATRDLLNRSFPHYDELSYIFGKDRATRARVESFTNVESNDPVRYETFAADATPDMEFQPMHSQGLDMSSDELMGIRTTQVSEGRHVLSGFKQKRGVQ

Query:  PADSGDVIRTTIEYKNEQLNHIVDWIVLQRQDASQTRQEVVQQLETIPELTLMDRCRLIRILMRNVDNMKAFLDVPDKMKFPYYNIILQEN
         A+S +VIRT IEY+NEQLN I +  VLQRQDASQTRQEVV+QLE IPELTLMDRCR++RILMRNVD+MKAFLD+PD MK+ Y NIILQEN
Subjt:  PADSGDVIRTTIEYKNEQLNHIVDWIVLQRQDASQTRQEVVQQLETIPELTLMDRCRLIRILMRNVDNMKAFLDVPDKMKFPYYNIILQEN

KAA0068123.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-6855.43Show/hide
Query:  MATTLRLLKHSWMKEEDAYLVEL--------------------------------------------SHPATRDLLNRSFPHYDELSYIFGKDRATRARV
        M ++ RLLKH+W KEE+A LVEL                                            SHPA + LLN+SF HYDELSY+FGKDRAT  R 
Subjt:  MATTLRLLKHSWMKEEDAYLVEL--------------------------------------------SHPATRDLLNRSFPHYDELSYIFGKDRATRARV

Query:  ESFTNVESNDPVRYETFAADATPDMEFQPMHSQGLDMSSDELMGIRTTQVSEGRHVLSGFKQKRGVQPADSGDVIRTTIEYKNEQLNHIVDWIVLQRQDA
        ESF ++ SNDP  Y+ FAADA  D +F P++S GL+MS D+LM IRT +VSE R+V SG K KR     DSGD++RT IEY NEQL+ I +W +LQRQDA
Subjt:  ESFTNVESNDPVRYETFAADATPDMEFQPMHSQGLDMSSDELMGIRTTQVSEGRHVLSGFKQKRGVQPADSGDVIRTTIEYKNEQLNHIVDWIVLQRQDA

Query:  SQTRQEVVQQLETIPELTLMDRCRLIRILMRNVDNMKAFLDVPDKMKFPYYNIILQEN
        +QTRQE+V+QLE IPELTLMDRCRL+RI+MRNVD+MKAFL+VPD MK+PY +IILQEN
Subjt:  SQTRQEVVQQLETIPELTLMDRCRLIRILMRNVDNMKAFLDVPDKMKFPYYNIILQEN

TYK10954.1 retrotransposon protein [Cucumis melo var. makuwa]8.3e-6970.16Show/hide
Query:  SHPATRDLLNRSFPHYDELSYIFGKDRATRARVESFTNVESNDPVRYETFAADATPDMEFQPMHSQGLDMSSDELMGIRTTQVSEGRHVLSGFKQKRGVQ
        SHPA + LLN+SF HYDELSY+FGK RAT  RVESF NV SNDP  Y+ FA DA PD +F PM+SQGL+MS D+LMG RT +VSE R+V SG K+KR   
Subjt:  SHPATRDLLNRSFPHYDELSYIFGKDRATRARVESFTNVESNDPVRYETFAADATPDMEFQPMHSQGLDMSSDELMGIRTTQVSEGRHVLSGFKQKRGVQ

Query:  PADSGDVIRTTIEYKNEQLNHIVDWIVLQRQDASQTRQEVVQQLETIPELTLMDRCRLIRILMRNVDNMKAFLDVPDKMKFPYYNIILQEN
          DSGD++RT IEY+NEQLN I +W VLQRQ+ASQTRQEVV++LE IPEL LMDRCRL+ ILM NVD+MKAFLDVPD MK+ YYNIILQEN
Subjt:  PADSGDVIRTTIEYKNEQLNHIVDWIVLQRQDASQTRQEVVQQLETIPELTLMDRCRLIRILMRNVDNMKAFLDVPDKMKFPYYNIILQEN

TrEMBL top hitse value%identityAlignment
A0A5A7VBC5 Retrotransposon protein1.6e-7071.2Show/hide
Query:  SHPATRDLLNRSFPHYDELSYIFGKDRATRARVESFTNVESNDPVRYETFAADATPDMEFQPMHSQGLDMSSDELMGIRTTQVSEGRHVLSGFKQKRGVQ
        SHPA + LLN+SF HYDELSY+FGKDRAT  RVESF NV SNDP  Y+ FA DA PD +F PM+SQGL+MS D+LMG RT +VSE R+V SG K+KR   
Subjt:  SHPATRDLLNRSFPHYDELSYIFGKDRATRARVESFTNVESNDPVRYETFAADATPDMEFQPMHSQGLDMSSDELMGIRTTQVSEGRHVLSGFKQKRGVQ

Query:  PADSGDVIRTTIEYKNEQLNHIVDWIVLQRQDASQTRQEVVQQLETIPELTLMDRCRLIRILMRNVDNMKAFLDVPDKMKFPYYNIILQEN
          DSGD++RT IEY+NEQLN I +W VLQRQ+ASQTRQEVV+QLE IPEL LMDRCRL+ ILM NVD+MKAFLDVPD MK+ YYNIILQEN
Subjt:  PADSGDVIRTTIEYKNEQLNHIVDWIVLQRQDASQTRQEVVQQLETIPELTLMDRCRLIRILMRNVDNMKAFLDVPDKMKFPYYNIILQEN

A0A5A7VDW8 Retrotransposon protein1.4e-10980.22Show/hide
Query:  MATTLRLLKHSWMKEEDAYLVEL-----------------------------------------------------SHPATRDLLNRSFPHYDELSYIFG
        MATTLRLLKHSWMKEEDAYLVEL                                                     SHPATRDLLNRSFPHYDELSYIFG
Subjt:  MATTLRLLKHSWMKEEDAYLVEL-----------------------------------------------------SHPATRDLLNRSFPHYDELSYIFG

Query:  KDRATRARVESFTNVESNDPVRYETFAADATPDMEFQPMHSQGLDMSSDELMGIRTTQVSEGRHVLSGFKQKRGVQPADSGDVIRTTIEYKNEQLNHIVD
        KDRATRARVESFTNVESNDPVRYETFAADATPDMEFQPMHSQGLDMSSDELMGIRTTQVSEGRHVLSGFKQKRGVQPADSGDVIRTTIEYKNEQLNHIVD
Subjt:  KDRATRARVESFTNVESNDPVRYETFAADATPDMEFQPMHSQGLDMSSDELMGIRTTQVSEGRHVLSGFKQKRGVQPADSGDVIRTTIEYKNEQLNHIVD

Query:  WIVLQRQDASQTRQEVVQQLETIPELTLMDRCRLIRILMRNVDNMKAFLDVPDKMKFPYYNIILQENS
        WIVLQRQDASQTRQEVVQQLETIPELTLMDRCRLIRILMRNVDNMKAFLDVPDKMKFPYYNIILQENS
Subjt:  WIVLQRQDASQTRQEVVQQLETIPELTLMDRCRLIRILMRNVDNMKAFLDVPDKMKFPYYNIILQENS

A0A5A7VJ40 Retrotransposon protein5.2e-6955.43Show/hide
Query:  MATTLRLLKHSWMKEEDAYLVEL--------------------------------------------SHPATRDLLNRSFPHYDELSYIFGKDRATRARV
        M ++ RLLKH+W KEE+A LVEL                                            SHPA + LLN+SF HYDELSY+FGKDRAT  R 
Subjt:  MATTLRLLKHSWMKEEDAYLVEL--------------------------------------------SHPATRDLLNRSFPHYDELSYIFGKDRATRARV

Query:  ESFTNVESNDPVRYETFAADATPDMEFQPMHSQGLDMSSDELMGIRTTQVSEGRHVLSGFKQKRGVQPADSGDVIRTTIEYKNEQLNHIVDWIVLQRQDA
        ESF ++ SNDP  Y+ FAADA  D +F P++S GL+MS D+LM IRT +VSE R+V SG K KR     DSGD++RT IEY NEQL+ I +W +LQRQDA
Subjt:  ESFTNVESNDPVRYETFAADATPDMEFQPMHSQGLDMSSDELMGIRTTQVSEGRHVLSGFKQKRGVQPADSGDVIRTTIEYKNEQLNHIVDWIVLQRQDA

Query:  SQTRQEVVQQLETIPELTLMDRCRLIRILMRNVDNMKAFLDVPDKMKFPYYNIILQEN
        +QTRQE+V+QLE IPELTLMDRCRL+RI+MRNVD+MKAFL+VPD MK+PY +IILQEN
Subjt:  SQTRQEVVQQLETIPELTLMDRCRLIRILMRNVDNMKAFLDVPDKMKFPYYNIILQEN

A0A5A7VJD7 Retrotransposon protein1.5e-6870.16Show/hide
Query:  SHPATRDLLNRSFPHYDELSYIFGKDRATRARVESFTNVESNDPVRYETFAADATPDMEFQPMHSQGLDMSSDELMGIRTTQVSEGRHVLSGFKQKRGVQ
        S+ A +DLLN+SFPHYDELSY+FGKDRATR + E+F +V  NDP +YE F ADA  D +FQPM++QGL+MS DELMG RTT+VSEGR V +  ++KRG Q
Subjt:  SHPATRDLLNRSFPHYDELSYIFGKDRATRARVESFTNVESNDPVRYETFAADATPDMEFQPMHSQGLDMSSDELMGIRTTQVSEGRHVLSGFKQKRGVQ

Query:  PADSGDVIRTTIEYKNEQLNHIVDWIVLQRQDASQTRQEVVQQLETIPELTLMDRCRLIRILMRNVDNMKAFLDVPDKMKFPYYNIILQEN
         A+S +VIRT IEY+NEQLN I +  VLQRQDASQTRQEVV+QLE IPELTLMDRCR++RILMRNVD+MKAFLD+PD MK+ Y NIILQEN
Subjt:  PADSGDVIRTTIEYKNEQLNHIVDWIVLQRQDASQTRQEVVQQLETIPELTLMDRCRLIRILMRNVDNMKAFLDVPDKMKFPYYNIILQEN

A0A5D3CIF5 Retrotransposon protein4.0e-6970.16Show/hide
Query:  SHPATRDLLNRSFPHYDELSYIFGKDRATRARVESFTNVESNDPVRYETFAADATPDMEFQPMHSQGLDMSSDELMGIRTTQVSEGRHVLSGFKQKRGVQ
        SHPA + LLN+SF HYDELSY+FGK RAT  RVESF NV SNDP  Y+ FA DA PD +F PM+SQGL+MS D+LMG RT +VSE R+V SG K+KR   
Subjt:  SHPATRDLLNRSFPHYDELSYIFGKDRATRARVESFTNVESNDPVRYETFAADATPDMEFQPMHSQGLDMSSDELMGIRTTQVSEGRHVLSGFKQKRGVQ

Query:  PADSGDVIRTTIEYKNEQLNHIVDWIVLQRQDASQTRQEVVQQLETIPELTLMDRCRLIRILMRNVDNMKAFLDVPDKMKFPYYNIILQEN
          DSGD++RT IEY+NEQLN I +W VLQRQ+ASQTRQEVV++LE IPEL LMDRCRL+ ILM NVD+MKAFLDVPD MK+ YYNIILQEN
Subjt:  PADSGDVIRTTIEYKNEQLNHIVDWIVLQRQDASQTRQEVVQQLETIPELTLMDRCRLIRILMRNVDNMKAFLDVPDKMKFPYYNIILQEN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGTCGTTGATGTTAAGGAGATGGTCGCAATCATGGCAACTACATTAAGACTACTTAAGCACAGTTGGATGAAAGAGGAAGACGCATACCTCGTCGAGTTAAGTCA
TCCAGCTACGAGGGACCTCCTTAACAGATCGTTTCCCCACTATGACGAACTGTCATACATCTTTGGCAAAGATCGTGCAACGAGAGCCCGGGTCGAGAGTTTTACAAACG
TCGAGTCTAATGATCCTGTTAGGTACGAGACATTTGCTGCTGACGCTACGCCGGATATGGAGTTCCAGCCTATGCATAGTCAGGGGTTGGACATGTCGTCTGACGAATTA
ATGGGAATAAGAACCACTCAGGTAAGTGAGGGTAGGCATGTTTTGAGCGGGTTTAAGCAAAAACGTGGAGTACAACCCGCAGATAGCGGGGATGTAATTCGCACTACGAT
TGAGTACAAAAATGAACAGCTTAACCACATTGTTGACTGGATTGTCCTACAACGTCAAGATGCAAGCCAAACACGGCAAGAGGTTGTCCAACAGTTGGAAACGATCCCTG
AGCTGACATTGATGGATAGGTGTCGCTTAATACGTATACTGATGCGTAACGTGGACAACATGAAAGCTTTTCTTGACGTTCCCGACAAAATGAAGTTCCCGTACTATAAC
ATAATTCTTCAAGAAAACTCATGA
mRNA sequenceShow/hide mRNA sequence
ACCTAGTGTGTCGGCAAAGTACGAGAATGGACCGAAGAGTTTCGCCATTTTGTGCCACCTACTTAGGACCATTGTTGAACTAACATCGATGAAAGTCGTTGATGTTAAGG
AGATGGTCGCAATCATGGCAACTACATTAAGACTACTTAAGCACAGTTGGATGAAAGAGGAAGACGCATACCTCGTCGAGTTAAGTCATCCAGCTACGAGGGACCTCCTT
AACAGATCGTTTCCCCACTATGACGAACTGTCATACATCTTTGGCAAAGATCGTGCAACGAGAGCCCGGGTCGAGAGTTTTACAAACGTCGAGTCTAATGATCCTGTTAG
GTACGAGACATTTGCTGCTGACGCTACGCCGGATATGGAGTTCCAGCCTATGCATAGTCAGGGGTTGGACATGTCGTCTGACGAATTAATGGGAATAAGAACCACTCAGG
TAAGTGAGGGTAGGCATGTTTTGAGCGGGTTTAAGCAAAAACGTGGAGTACAACCCGCAGATAGCGGGGATGTAATTCGCACTACGATTGAGTACAAAAATGAACAGCTT
AACCACATTGTTGACTGGATTGTCCTACAACGTCAAGATGCAAGCCAAACACGGCAAGAGGTTGTCCAACAGTTGGAAACGATCCCTGAGCTGACATTGATGGATAGGTG
TCGCTTAATACGTATACTGATGCGTAACGTGGACAACATGAAAGCTTTTCTTGACGTTCCCGACAAAATGAAGTTCCCGTACTATAACATAATTCTTCAAGAAAACTCAT
GA
Protein sequenceShow/hide protein sequence
MKVVDVKEMVAIMATTLRLLKHSWMKEEDAYLVELSHPATRDLLNRSFPHYDELSYIFGKDRATRARVESFTNVESNDPVRYETFAADATPDMEFQPMHSQGLDMSSDEL
MGIRTTQVSEGRHVLSGFKQKRGVQPADSGDVIRTTIEYKNEQLNHIVDWIVLQRQDASQTRQEVVQQLETIPELTLMDRCRLIRILMRNVDNMKAFLDVPDKMKFPYYN
IILQENS