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MELO3C034568 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C034568
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionExopolygalacturonase-like
Genome locationchr11:1606999..1607437
RNA-Seq ExpressionMELO3C034568
SyntenyMELO3C034568
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045593.1 exopolygalacturonase-like [Cucumis melo var. makuwa]1.1e-4497.03Show/hide
Query:  MGLISNFVTLLPVLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPK
        MGLISNFV LLPVLLLLVSNSKAQSSG VFDITKYGAKPNADVTAAL SAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPK
Subjt:  MGLISNFVTLLPVLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPK

Query:  G
        G
Subjt:  G

KAA0045594.1 exopolygalacturonase-like [Cucumis melo var. makuwa]6.3e-4598.02Show/hide
Query:  MGLISNFVTLLPVLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPK
        MGLISNFV LL VLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPK
Subjt:  MGLISNFVTLLPVLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPK

Query:  G
        G
Subjt:  G

KAA0045608.1 exopolygalacturonase-like [Cucumis melo var. makuwa]2.0e-46100Show/hide
Query:  MGLISNFVTLLPVLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPK
        MGLISNFVTLLPVLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPK
Subjt:  MGLISNFVTLLPVLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPK

Query:  G
        G
Subjt:  G

KAA0045610.1 exopolygalacturonase-like [Cucumis melo var. makuwa]5.0e-4294.06Show/hide
Query:  MGLISNFVTLLPVLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPK
        MGLISNFV LL VLLLLVSN KAQSSG V DITK+GAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPK
Subjt:  MGLISNFVTLLPVLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPK

Query:  G
        G
Subjt:  G

TYK28802.1 exopolygalacturonase-like [Cucumis melo var. makuwa]6.3e-4598.02Show/hide
Query:  MGLISNFVTLLPVLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPK
        MGLISNFV LL VLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPK
Subjt:  MGLISNFVTLLPVLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPK

Query:  G
        G
Subjt:  G

TrEMBL top hitse value%identityAlignment
A0A5A7TR51 Exopolygalacturonase-like3.1e-4598.02Show/hide
Query:  MGLISNFVTLLPVLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPK
        MGLISNFV LL VLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPK
Subjt:  MGLISNFVTLLPVLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPK

Query:  G
        G
Subjt:  G

A0A5A7TRZ0 Exopolygalacturonase-like9.5e-47100Show/hide
Query:  MGLISNFVTLLPVLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPK
        MGLISNFVTLLPVLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPK
Subjt:  MGLISNFVTLLPVLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPK

Query:  G
        G
Subjt:  G

A0A5D3BWP4 Exopolygalacturonase-like2.4e-4294.06Show/hide
Query:  MGLISNFVTLLPVLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPK
        MGLISNFV LL VLLLLVSN KAQSSG V DITK+GAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPK
Subjt:  MGLISNFVTLLPVLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPK

Query:  G
        G
Subjt:  G

A0A5D3DYI3 Exopolygalacturonase-like5.2e-4597.03Show/hide
Query:  MGLISNFVTLLPVLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPK
        MGLISNFV LLPVLLLLVSNSKAQSSG VFDITKYGAKPNADVTAAL SAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPK
Subjt:  MGLISNFVTLLPVLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPK

Query:  G
        G
Subjt:  G

A0A5D3DYX7 Exopolygalacturonase-like3.1e-4598.02Show/hide
Query:  MGLISNFVTLLPVLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPK
        MGLISNFV LL VLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPK
Subjt:  MGLISNFVTLLPVLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPK

Query:  G
        G
Subjt:  G

SwissProt top hitse value%identityAlignment
Q05967 Polygalacturonase3.9e-2156.98Show/hide
Query:  LLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADP
        L+LL      +S  GVFDITKYGA  NAD++ AL +A+KEAC ST+PS ++IPKG++ ++Q  L+GPCKS +ELQI+ TL+AP+DP
Subjt:  LLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADP

Q39766 Polygalacturonase4.0e-1852.13Show/hide
Query:  TLLPVLLLLVSNSKAQSSGGVFD-ITKYGAKPN--ADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADP
        ++  +LLL +S SK Q     FD + K+GAK +   D++     AWKEACAS TPS V+IPKG+Y LS+ NL+GPCK+ IE+ ++GT+QAPADP
Subjt:  TLLPVLLLLVSNSKAQSSGGVFD-ITKYGAKPN--ADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADP

Q39786 Polygalacturonase1.1e-1853.19Show/hide
Query:  TLLPVLLLLVSNSKAQSSGGVFD-ITKYGAKPN--ADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADP
        ++  +LLL +S SK QS    FD + K+GAK +   D++     AWKEACAS TPS V+IPKG+Y LS+ NL+GPCK+ IE+ ++GT+QAPADP
Subjt:  TLLPVLLLLVSNSKAQSSGGVFD-ITKYGAKPN--ADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADP

Q40312 Polygalacturonase1.0e-2155.91Show/hide
Query:  FVTLLPVLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADP
        F T + V  L +++  A  S GV DI+K+G KPN+D+  AL SAW EACASTT +K++IP G+Y L+   LKGPCK+ IELQ++GT+QAPADP
Subjt:  FVTLLPVLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADP

W8P8Q3 Probable galacturan 1,4-alpha-galacturonidase SALK65.3e-1847.31Show/hide
Query:  NFVTLLPVLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPAD
        N   L+ +  L VS +++Q   G  DITK+GAKPNAD T+AL +AWKEACA+  P+K+++P G + L+   L+GPCK+ + ++I G  +APAD
Subjt:  NFVTLLPVLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPAD

Arabidopsis top hitse value%identityAlignment
AT1G05650.1 Pectin lyase-like superfamily protein6.4e-1137.63Show/hide
Query:  VTLLPVLLLLVSNSKAQSSGGVFDITKYGAKPN--ADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPAD
        +T   +  LL     + S+  VF++  +GAKP+   D TAA   AW+ AC S   + V++P G++ L      GPCKS I  Q+ GT+ AP D
Subjt:  VTLLPVLLLLVSNSKAQSSGGVFDITKYGAKPN--ADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPAD

AT1G05660.1 Pectin lyase-like superfamily protein2.2e-1142.11Show/hide
Query:  SSGGVFDITKYGAKPN--ADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPAD
        S+  VF++  +GAKP+   D T A   AW+ AC S + + V++PKG++ L      GPCKS I  Q+ GT+ AP D
Subjt:  SSGGVFDITKYGAKPN--ADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPAD

AT1G43090.1 Pectin lyase-like superfamily protein2.2e-1136.89Show/hide
Query:  MGLISNFVTLLPVLLLLVSNSKAQSSGGVFDITKYGAKPN--ADVTAALASAWKEACASTT-PSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPA
        + + S F  L    L +V  S+      VF++ +YG++P+   D   A  S WK AC   +  SK+ +PKG++ L      GPCK+ IE  I+GTL APA
Subjt:  MGLISNFVTLLPVLLLLVSNSKAQSSGGVFDITKYGAKPN--ADVTAALASAWKEACASTT-PSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPA

Query:  DPK
        +P+
Subjt:  DPK

AT2G26620.1 Pectin lyase-like superfamily protein2.9e-1141.57Show/hide
Query:  LLLLVSNSKAQSSGGVFDITKYGAKPN--ADVTAALASAWKEACASTT-PSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADP
        LLL+V  S++     VF++ ++G+KP+   D T A  S W  AC   +  SK+ +PKG++ L      GPCK+ IE  I+GTL APA+P
Subjt:  LLLLVSNSKAQSSGGVFDITKYGAKPN--ADVTAALASAWKEACASTT-PSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADP

AT2G43890.1 Pectin lyase-like superfamily protein2.2e-1137.11Show/hide
Query:  LLPVLLLLVSN---SKAQSSGGVFDITKYGAKPN--ADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPKG
        L+ VLL+  S+    K+ ++   +++  +GAKP+   D T A   AW+ AC S     V +P+GS+ L     +GPC+S I  QI GT+ AP+D +G
Subjt:  LLPVLLLLVSN---SKAQSSGGVFDITKYGAKPN--ADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPKG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTTGATATCAAACTTTGTGACATTATTACCGGTGTTGTTATTGTTGGTGTCTAATTCTAAAGCTCAATCTAGTGGTGGTGTTTTTGATATCACAAAATACGGTGC
CAAACCTAATGCAGATGTAACTGCGGCTTTGGCAAGTGCATGGAAGGAGGCGTGTGCATCGACCACACCAAGTAAAGTTTTGATTCCAAAAGGAAGTTACGGGTTAAGTC
AATCCAACCTTAAAGGCCCTTGTAAAAGTGCTATTGAACTACAAATTGAAGGGACATTACAAGCTCCGGCTGACCCAAAAGGA
mRNA sequenceShow/hide mRNA sequence
ATTCCCAAGCTAGGAATTTGATAAAAAAAAAGTAGATAGAGGAAAAAATGGGTTTGATATCAAACTTTGTGACATTATTACCGGTGTTGTTATTGTTGGTGTCTAATTCT
AAAGCTCAATCTAGTGGTGGTGTTTTTGATATCACAAAATACGGTGCCAAACCTAATGCAGATGTAACTGCGGCTTTGGCAAGTGCATGGAAGGAGGCGTGTGCATCGAC
CACACCAAGTAAAGTTTTGATTCCAAAAGGAAGTTACGGGTTAAGTCAATCCAACCTTAAAGGCCCTTGTAAAAGTGCTATTGAACTACAAATTGAAGGGACATTACAAG
CTCCGGCTGACCCAAAAGGA
Protein sequenceShow/hide protein sequence
MGLISNFVTLLPVLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTPSKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPKG