; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C034591 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C034591
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
Descriptionprotein LTV1 homolog
Genome locationchr06:31378220..31378752
RNA-Seq ExpressionMELO3C034591
SyntenyMELO3C034591
Gene Ontology termsGO:0000056 - ribosomal small subunit export from nucleus (biological process)
GO:0042274 - ribosomal small subunit biogenesis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005829 - cytosol (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0030688 - preribosome, small subunit precursor (cellular component)
InterPro domainsIPR007307 - Low temperature viability protein Ltv1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008448616.1 PREDICTED: protein LTV1 homolog [Cucumis melo]1.8e-50100Show/hide
Query:  MQSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQVPRDEKAYDASRMVVSKMNVDADENVYKVASKIVGIRVQNV
        MQSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQVPRDEKAYDASRMVVSKMNVDADENVYKVASKIVGIRVQNV
Subjt:  MQSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQVPRDEKAYDASRMVVSKMNVDADENVYKVASKIVGIRVQNV

Query:  VDPE
        VDPE
Subjt:  VDPE

XP_011650323.1 protein LTV1 homolog [Cucumis sativus]2.4e-4792.31Show/hide
Query:  MQSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQVPRDEKAYDASRMVVSKMNVDADENVYKVASKIVGIRVQNV
        MQ  G+VGGTSSLPENVR++ILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQVPRDEKAYDASRM+VSKMNVDADEN YKVASKIVG+RVQNV
Subjt:  MQSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQVPRDEKAYDASRMVVSKMNVDADENVYKVASKIVGIRVQNV

Query:  VDPE
        VDPE
Subjt:  VDPE

XP_022134639.1 protein LTV1 homolog [Momordica charantia]4.1e-3978.85Show/hide
Query:  QSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQVPRDEKAYDASRMVVSKMNVDADEN-VYKVASKIVGIRVQNV
        +SRGE+GG + LPE++RREILELGFPDDGYNYLLHLREIKNTGGGS FYQNPKAKL+Q+PRDEKAYDASR++VSK N D DEN +YKVASK VG++VQN 
Subjt:  QSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQVPRDEKAYDASRMVVSKMNVDADEN-VYKVASKIVGIRVQNV

Query:  VDPE
        VDP+
Subjt:  VDPE

XP_022940362.1 protein LTV1 homolog [Cucurbita moschata]7.0e-3978.85Show/hide
Query:  QSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQVPRDEKAYDASRMVVSKMNVDADENV-YKVASKIVGIRVQNV
        +SRGE+GG +SLPENVRREILELGFPDDGYNYLLHLR+IKNTGGGS FY NPKAKLNQ+PRDEKAYDAS ++VS+   DADEN+ YKVASK VG++VQN 
Subjt:  QSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQVPRDEKAYDASRMVVSKMNVDADENV-YKVASKIVGIRVQNV

Query:  VDPE
        +DPE
Subjt:  VDPE

XP_038898842.1 protein LTV1 homolog [Benincasa hispida]2.7e-4385.58Show/hide
Query:  MQSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQVPRDEKAYDASRMVVSKMNVDADENVYKVASKIVGIRVQNV
        ++ R EVGGT+ LPENVRREILELGFPDDGYNYLLHLREIKNTGGGS FYQNPKAKLNQVPRDEKAYDASR++VSK N+DAD N+YKVASK VG+RVQNV
Subjt:  MQSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQVPRDEKAYDASRMVVSKMNVDADENVYKVASKIVGIRVQNV

Query:  VDPE
        VDPE
Subjt:  VDPE

TrEMBL top hitse value%identityAlignment
A0A0A0L517 Uncharacterized protein1.2e-4792.31Show/hide
Query:  MQSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQVPRDEKAYDASRMVVSKMNVDADENVYKVASKIVGIRVQNV
        MQ  G+VGGTSSLPENVR++ILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQVPRDEKAYDASRM+VSKMNVDADEN YKVASKIVG+RVQNV
Subjt:  MQSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQVPRDEKAYDASRMVVSKMNVDADENVYKVASKIVGIRVQNV

Query:  VDPE
        VDPE
Subjt:  VDPE

A0A1S3BKZ8 protein LTV1 homolog8.6e-51100Show/hide
Query:  MQSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQVPRDEKAYDASRMVVSKMNVDADENVYKVASKIVGIRVQNV
        MQSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQVPRDEKAYDASRMVVSKMNVDADENVYKVASKIVGIRVQNV
Subjt:  MQSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQVPRDEKAYDASRMVVSKMNVDADENVYKVASKIVGIRVQNV

Query:  VDPE
        VDPE
Subjt:  VDPE

A0A5D3CI19 Protein LTV1-like protein8.6e-51100Show/hide
Query:  MQSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQVPRDEKAYDASRMVVSKMNVDADENVYKVASKIVGIRVQNV
        MQSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQVPRDEKAYDASRMVVSKMNVDADENVYKVASKIVGIRVQNV
Subjt:  MQSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQVPRDEKAYDASRMVVSKMNVDADENVYKVASKIVGIRVQNV

Query:  VDPE
        VDPE
Subjt:  VDPE

A0A6J1BZB2 protein LTV1 homolog2.0e-3978.85Show/hide
Query:  QSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQVPRDEKAYDASRMVVSKMNVDADEN-VYKVASKIVGIRVQNV
        +SRGE+GG + LPE++RREILELGFPDDGYNYLLHLREIKNTGGGS FYQNPKAKL+Q+PRDEKAYDASR++VSK N D DEN +YKVASK VG++VQN 
Subjt:  QSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQVPRDEKAYDASRMVVSKMNVDADEN-VYKVASKIVGIRVQNV

Query:  VDPE
        VDP+
Subjt:  VDPE

A0A6J1FJD8 protein LTV1 homolog3.4e-3978.85Show/hide
Query:  QSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQVPRDEKAYDASRMVVSKMNVDADENV-YKVASKIVGIRVQNV
        +SRGE+GG +SLPENVRREILELGFPDDGYNYLLHLR+IKNTGGGS FY NPKAKLNQ+PRDEKAYDAS ++VS+   DADEN+ YKVASK VG++VQN 
Subjt:  QSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQVPRDEKAYDASRMVVSKMNVDADENV-YKVASKIVGIRVQNV

Query:  VDPE
        +DPE
Subjt:  VDPE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G49990.1 unknown protein1.4e-2964.29Show/hide
Query:  TSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQVPRDEKAYDASRMVVSKM-NVDADEN--VYKVASKIVGIRVQNVVDPE
        +SSLP +VR+EILELG+PDDGYNYL HLREIKNTGGGS FY NPK ++ Q+PRD KAYDASR+ +S M N + ++N  +Y VASK V ++VQ  +DPE
Subjt:  TSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQVPRDEKAYDASRMVVSKM-NVDADEN--VYKVASKIVGIRVQNVVDPE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGTCTCGTGGGGAAGTTGGTGGAACATCGTCGTTACCGGAAAATGTTAGAAGAGAGATTTTGGAGCTTGGGTTCCCTGATGACGGTTACAATTATTTGCTGCATCT
TCGGGAGATTAAGAATACTGGTGGTGGTTCGACATTTTATCAGAACCCCAAAGCCAAGCTGAATCAGGTTCCACGCGATGAGAAGGCTTATGACGCCTCCAGAATGGTTG
TTTCTAAAATGAACGTTGATGCCGATGAGAACGTCTACAAAGTTGCATCCAAGATTGTTGGAATCAGGGTTCAAAATGTTGTTGACCCTGAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGTCTCGTGGGGAAGTTGGTGGAACATCGTCGTTACCGGAAAATGTTAGAAGAGAGATTTTGGAGCTTGGGTTCCCTGATGACGGTTACAATTATTTGCTGCATCT
TCGGGAGATTAAGAATACTGGTGGTGGTTCGACATTTTATCAGAACCCCAAAGCCAAGCTGAATCAGGTTCCACGCGATGAGAAGGCTTATGACGCCTCCAGAATGGTTG
TTTCTAAAATGAACGTTGATGCCGATGAGAACGTCTACAAAGTTGCATCCAAGATTGTTGGAATCAGGGTTCAAAATGTTGTTGACCCTGAAAT
Protein sequenceShow/hide protein sequence
MQSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAKLNQVPRDEKAYDASRMVVSKMNVDADENVYKVASKIVGIRVQNVVDPE