; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MELO3C034896 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C034896
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
Description30-kDa cleavage and polyadenylation specificity factor 30-like
Genome locationchr11:8569260..8572713
RNA-Seq ExpressionMELO3C034896
SyntenyMELO3C034896
Gene Ontology termsGO:0000381 - regulation of alternative mRNA splicing, via spliceosome (biological process)
GO:0005654 - nucleoplasm (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003729 - mRNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:1990247 - N6-methyladenosine-containing RNA binding (molecular function)
InterPro domainsIPR007275 - YTH domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045310.1 gag/pol protein [Cucumis melo var. makuwa]2.3e-2995.06Show/hide
Query:  MKTFSSLSIVVVSVRPSLYSSSLSSHDFPRIFYFSASISQTCNLLASSNLSPSSTWVLLRVLCLPARLSTAIRHLKLMIRG
        MKT SSLSIVVVSV PSL SSSLSSHDFPRI YFSASISQTCNLLASSNLSPSSTWVLLRVLCLPARLSTAIRHLKLMIRG
Subjt:  MKTFSSLSIVVVSVRPSLYSSSLSSHDFPRIFYFSASISQTCNLLASSNLSPSSTWVLLRVLCLPARLSTAIRHLKLMIRG

KAA0051857.1 alpha-mannosidase [Cucumis melo var. makuwa]3.0e-3764.56Show/hide
Query:  MKTFSSLSIVVVSVRPSLYSSSLSSHDFPRIFYFSASISQTCNLLASSNLSPSSTWVLLRVLCLPARLSTAIRHLKLMIRGNFAQPLSVFHNISLSHILR
        MKT SSLS+VVVSVRPSL SSSLSSHDFPRI YFS+SISQTCNLLASSNLSPSSTW LLRVLCLPARLSTAIRHLKLMIR   +  LS+  +   S  L+
Subjt:  MKTFSSLSIVVVSVRPSLYSSSLSSHDFPRIFYFSASISQTCNLLASSNLSPSSTWVLLRVLCLPARLSTAIRHLKLMIRGNFAQPLSVFHNISLSHILR

Query:  PFSVVFTSTYYFGMLSNAHIIQVMVVYNPLGWIRNDVVRIP--RGVILLKNYSILNVD
                      L   +  QVMVVYNPLGWIRNDVVRIP  R ++LL  ++   ++
Subjt:  PFSVVFTSTYYFGMLSNAHIIQVMVVYNPLGWIRNDVVRIP--RGVILLKNYSILNVD

KAA0063708.1 30-kDa cleavage and polyadenylation specificity factor 30-like [Cucumis melo var. makuwa]1.7e-5362.1Show/hide
Query:  MKTFSSLSIVVVSVRPSLYSSSLSSHDFPRIFYFSASISQTCNLLASSNLSPSSTWVLLRVLCLPARLSTAIRHLKLMIRGNFAQPLSVFHNISLSHILR
        MKT SSLSIVVVSVRPSL SSSLSSHDFPRI YFSASISQTCNLLASSNLSPSSTWVLLRVLCL ARLSTAIRHLKLMIR   +  LS+  +   S  L+
Subjt:  MKTFSSLSIVVVSVRPSLYSSSLSSHDFPRIFYFSASISQTCNLLASSNLSPSSTWVLLRVLCLPARLSTAIRHLKLMIRGNFAQPLSVFHNISLSHILR

Query:  PFSVVFTSTYYFGMLSNAHIIQVMVVYNPLGWIRNDVVRIPRGVILLKNYSILNVDLLNLLLLWKYPFQFCNLFHSSSDKDMACEKMMSRIGGSVSGSNW
                      L   +  QVM +YN LGWIRNDVVRIP  +                        + C++     D D+ACEKMMSRIGGSVS  NW
Subjt:  PFSVVFTSTYYFGMLSNAHIIQVMVVYNPLGWIRNDVVRIPRGVILLKNYSILNVDLLNLLLLWKYPFQFCNLFHSSSDKDMACEKMMSRIGGSVSGSNW

Query:  KYAHGTAYYGQNFSLKWLK
        KYAHGTAYYGQNFSLKWLK
Subjt:  KYAHGTAYYGQNFSLKWLK

TYK08787.1 gag/pol protein [Cucumis melo var. makuwa]1.3e-2985.87Show/hide
Query:  MKTFSSLSIVVVSVRPSLYSSSLSSHDFPRIFYFSASISQTCNLLASSNLSPSSTWVLLRVLCLPARLSTAIRHLKLMIRGNFAQPLSVFHN
        MKT SSLSIVVVSV PSL SSSLSSHDFPRI YFSASISQTCNLLASSNLSPSSTWVLLRVLCLPARLSTAIRHLKLMIRG     L   +N
Subjt:  MKTFSSLSIVVVSVRPSLYSSSLSSHDFPRIFYFSASISQTCNLLASSNLSPSSTWVLLRVLCLPARLSTAIRHLKLMIRGNFAQPLSVFHN

XP_008445183.1 PREDICTED: 30-kDa cleavage and polyadenylation specificity factor 30 [Cucumis melo]8.1e-1170.83Show/hide
Query:  CEKMMSRIGGSVSGSNWKYAHGTAYYGQNFSLKWLKVNEMCLTRGKKI
        C KMMSRIGGSVSG NWKYAHGTA+YGQNFSLKWLK+ E+   + + +
Subjt:  CEKMMSRIGGSVSGSNWKYAHGTAYYGQNFSLKWLKVNEMCLTRGKKI

TrEMBL top hitse value%identityAlignment
A0A5A7TQ62 Gag/pol protein1.1e-2995.06Show/hide
Query:  MKTFSSLSIVVVSVRPSLYSSSLSSHDFPRIFYFSASISQTCNLLASSNLSPSSTWVLLRVLCLPARLSTAIRHLKLMIRG
        MKT SSLSIVVVSV PSL SSSLSSHDFPRI YFSASISQTCNLLASSNLSPSSTWVLLRVLCLPARLSTAIRHLKLMIRG
Subjt:  MKTFSSLSIVVVSVRPSLYSSSLSSHDFPRIFYFSASISQTCNLLASSNLSPSSTWVLLRVLCLPARLSTAIRHLKLMIRG

A0A5A7V801 30-kDa cleavage and polyadenylation specificity factor 30-like8.3e-5462.1Show/hide
Query:  MKTFSSLSIVVVSVRPSLYSSSLSSHDFPRIFYFSASISQTCNLLASSNLSPSSTWVLLRVLCLPARLSTAIRHLKLMIRGNFAQPLSVFHNISLSHILR
        MKT SSLSIVVVSVRPSL SSSLSSHDFPRI YFSASISQTCNLLASSNLSPSSTWVLLRVLCL ARLSTAIRHLKLMIR   +  LS+  +   S  L+
Subjt:  MKTFSSLSIVVVSVRPSLYSSSLSSHDFPRIFYFSASISQTCNLLASSNLSPSSTWVLLRVLCLPARLSTAIRHLKLMIRGNFAQPLSVFHNISLSHILR

Query:  PFSVVFTSTYYFGMLSNAHIIQVMVVYNPLGWIRNDVVRIPRGVILLKNYSILNVDLLNLLLLWKYPFQFCNLFHSSSDKDMACEKMMSRIGGSVSGSNW
                      L   +  QVM +YN LGWIRNDVVRIP  +                        + C++     D D+ACEKMMSRIGGSVS  NW
Subjt:  PFSVVFTSTYYFGMLSNAHIIQVMVVYNPLGWIRNDVVRIPRGVILLKNYSILNVDLLNLLLLWKYPFQFCNLFHSSSDKDMACEKMMSRIGGSVSGSNW

Query:  KYAHGTAYYGQNFSLKWLK
        KYAHGTAYYGQNFSLKWLK
Subjt:  KYAHGTAYYGQNFSLKWLK

A0A5D3C2W1 30-kDa cleavage and polyadenylation specificity factor 303.9e-1170.83Show/hide
Query:  CEKMMSRIGGSVSGSNWKYAHGTAYYGQNFSLKWLKVNEMCLTRGKKI
        C KMMSRIGGSVSG NWKYAHGTA+YGQNFSLKWLK+ E+   + + +
Subjt:  CEKMMSRIGGSVSGSNWKYAHGTAYYGQNFSLKWLKVNEMCLTRGKKI

A0A5D3C9X4 Gag/pol protein6.4e-3085.87Show/hide
Query:  MKTFSSLSIVVVSVRPSLYSSSLSSHDFPRIFYFSASISQTCNLLASSNLSPSSTWVLLRVLCLPARLSTAIRHLKLMIRGNFAQPLSVFHN
        MKT SSLSIVVVSV PSL SSSLSSHDFPRI YFSASISQTCNLLASSNLSPSSTWVLLRVLCLPARLSTAIRHLKLMIRG     L   +N
Subjt:  MKTFSSLSIVVVSVRPSLYSSSLSSHDFPRIFYFSASISQTCNLLASSNLSPSSTWVLLRVLCLPARLSTAIRHLKLMIRGNFAQPLSVFHN

A0A5D3DCT3 Alpha-mannosidase1.4e-3764.56Show/hide
Query:  MKTFSSLSIVVVSVRPSLYSSSLSSHDFPRIFYFSASISQTCNLLASSNLSPSSTWVLLRVLCLPARLSTAIRHLKLMIRGNFAQPLSVFHNISLSHILR
        MKT SSLS+VVVSVRPSL SSSLSSHDFPRI YFS+SISQTCNLLASSNLSPSSTW LLRVLCLPARLSTAIRHLKLMIR   +  LS+  +   S  L+
Subjt:  MKTFSSLSIVVVSVRPSLYSSSLSSHDFPRIFYFSASISQTCNLLASSNLSPSSTWVLLRVLCLPARLSTAIRHLKLMIRGNFAQPLSVFHNISLSHILR

Query:  PFSVVFTSTYYFGMLSNAHIIQVMVVYNPLGWIRNDVVRIP--RGVILLKNYSILNVD
                      L   +  QVMVVYNPLGWIRNDVVRIP  R ++LL  ++   ++
Subjt:  PFSVVFTSTYYFGMLSNAHIIQVMVVYNPLGWIRNDVVRIP--RGVILLKNYSILNVD

SwissProt top hitse value%identityAlignment
A9LNK9 30-kDa cleavage and polyadenylation specificity factor 302.1e-0954.17Show/hide
Query:  CEKMMSRIGGSVSGSNWKYAHGTAYYGQNFSLKWLKVNEMCLTRGKKI
        C KM SRIGG + G NWK+ HGTA YG+NFS+KWLK+ E+   + + +
Subjt:  CEKMMSRIGGSVSGSNWKYAHGTAYYGQNFSLKWLKVNEMCLTRGKKI

Q0DA50 Zinc finger CCCH domain-containing protein 452.1e-0965Show/hide
Query:  CEKMMSRIGGSVSGSNWKYAHGTAYYGQNFSLKWLKVNEM
        C KM SRIGG + G NWK AHGTA+YG+NFS++WLK+ E+
Subjt:  CEKMMSRIGGSVSGSNWKYAHGTAYYGQNFSLKWLKVNEM

Arabidopsis top hitse value%identityAlignment
AT1G30460.1 cleavage and polyadenylation specificity factor 301.5e-1054.17Show/hide
Query:  CEKMMSRIGGSVSGSNWKYAHGTAYYGQNFSLKWLKVNEMCLTRGKKI
        C KM SRIGG + G NWK+ HGTA YG+NFS+KWLK+ E+   + + +
Subjt:  CEKMMSRIGGSVSGSNWKYAHGTAYYGQNFSLKWLKVNEMCLTRGKKI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGACATTTTCATCTCTATCCATCGTCGTTGTCTCTGTTCGTCCGTCTCTCTATTCATCATCACTTTCATCACACGATTTCCCTAGAATATTCTATTTTTCAGCTTC
AATCTCTCAGACTTGCAATCTTTTAGCTTCATCTAATCTCTCACCGTCGTCCACATGGGTTTTGCTTAGGGTTCTTTGTCTACCAGCTCGTCTCTCTACTGCTATTAGAC
ACTTGAAGCTTATGATTCGAGGAAATTTTGCACAACCCCTTTCTGTCTTTCATAACATATCTCTCTCCCACATCCTACGACCTTTTTCTGTTGTTTTCACTTCCACGTAT
TATTTTGGGATGCTTTCTAATGCACATATAATCCAGGTCATGGTGGTGTACAATCCTCTTGGATGGATCCGTAATGATGTTGTTAGAATACCGCGAGGAGTGATATTATT
GAAGAACTATAGTATCTTAAATGTTGATCTTCTCAATCTTCTCTTGCTATGGAAGTATCCTTTTCAGTTCTGTAACCTTTTCCATTCATCTTCTGATAAAGACATGGCTT
GTGAAAAGATGATGTCCAGAATTGGTGGTTCTGTTAGTGGGAGCAATTGGAAATATGCACATGGAACTGCATATTATGGTCAAAATTTTTCACTCAAATGGCTGAAGGTG
AATGAAATGTGTCTTACCAGAGGAAAAAAGATCCTACGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGACATTTTCATCTCTATCCATCGTCGTTGTCTCTGTTCGTCCGTCTCTCTATTCATCATCACTTTCATCACACGATTTCCCTAGAATATTCTATTTTTCAGCTTC
AATCTCTCAGACTTGCAATCTTTTAGCTTCATCTAATCTCTCACCGTCGTCCACATGGGTTTTGCTTAGGGTTCTTTGTCTACCAGCTCGTCTCTCTACTGCTATTAGAC
ACTTGAAGCTTATGATTCGAGGAAATTTTGCACAACCCCTTTCTGTCTTTCATAACATATCTCTCTCCCACATCCTACGACCTTTTTCTGTTGTTTTCACTTCCACGTAT
TATTTTGGGATGCTTTCTAATGCACATATAATCCAGGTCATGGTGGTGTACAATCCTCTTGGATGGATCCGTAATGATGTTGTTAGAATACCGCGAGGAGTGATATTATT
GAAGAACTATAGTATCTTAAATGTTGATCTTCTCAATCTTCTCTTGCTATGGAAGTATCCTTTTCAGTTCTGTAACCTTTTCCATTCATCTTCTGATAAAGACATGGCTT
GTGAAAAGATGATGTCCAGAATTGGTGGTTCTGTTAGTGGGAGCAATTGGAAATATGCACATGGAACTGCATATTATGGTCAAAATTTTTCACTCAAATGGCTGAAGGTG
AATGAAATGTGTCTTACCAGAGGAAAAAAGATCCTACGATGACAATACCTTATATGATAATATAATCTTGGACACTTGGTGAATTTTGTTTGTATTTTAAGGGTTATTTT
GTGTTGTGCTACATTCACTAAATACTTTATCTACATTTGTATCATTTAGACCACAACTTTATTTGAG
Protein sequenceShow/hide protein sequence
MKTFSSLSIVVVSVRPSLYSSSLSSHDFPRIFYFSASISQTCNLLASSNLSPSSTWVLLRVLCLPARLSTAIRHLKLMIRGNFAQPLSVFHNISLSHILRPFSVVFTSTY
YFGMLSNAHIIQVMVVYNPLGWIRNDVVRIPRGVILLKNYSILNVDLLNLLLLWKYPFQFCNLFHSSSDKDMACEKMMSRIGGSVSGSNWKYAHGTAYYGQNFSLKWLKV
NEMCLTRGKKILR