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MELO3C035006 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C035006
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionSWIM-type domain-containing protein
Genome locationchr09:16625202..16625940
RNA-Seq ExpressionMELO3C035006
SyntenyMELO3C035006
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK03234.1 uncharacterized protein E5676_scaffold298G00470 [Cucumis melo var. makuwa]3.0e-1751.72Show/hide
Query:  LNLDTYSYVFEFYYRETLSATYNGCIQLVGSDFDWRVVDSVMKILPPVFKRQARRPRKQRIPYVREFSSSTRCSNCNRKGHNSKTCK
        LNL+ Y++V ++YY   LSATY G ++ +G+  DW VV+    ILPPVF+R A RPRK+RIP + E S S++CS C R GHN +TC+
Subjt:  LNLDTYSYVFEFYYRETLSATYNGCIQLVGSDFDWRVVDSVMKILPPVFKRQARRPRKQRIPYVREFSSSTRCSNCNRKGHNSKTCK

TYK07957.1 hypothetical protein E5676_scaffold265G00780 [Cucumis melo var. makuwa]6.8e-3888.04Show/hide
Query:  MLNLDTYSYVFEFYYRETLSATYNGCIQLVGSDFDWRVVDSVMKILPPVFKRQARRPRKQRIPYVREFSSSTRCSNCNRKGHNSKTCKQGKV
        MLNLDTYSYV EFYYRETLS TYNGCIQ VGS FDWRVVDSVMKILPPVFKRQA RP KQRIP V EF+SST+CSNCNRKGHNS+TCKQGKV
Subjt:  MLNLDTYSYVFEFYYRETLSATYNGCIQLVGSDFDWRVVDSVMKILPPVFKRQARRPRKQRIPYVREFSSSTRCSNCNRKGHNSKTCKQGKV

XP_016900337.1 PREDICTED: uncharacterized protein LOC107990862 [Cucumis melo]1.7e-1752.33Show/hide
Query:  LNLDTYSYVFEFYYRETLSATYNGCIQLVGSDFDWRVVDSVMKILPPVFKRQARRPRKQRIPYVREFSSSTRCSNCNRKGHNSKTC
        LNL+ Y++V ++YY   LSATY G ++ +G+  DW VV+    ILPPVF+R A RPRK+RIP + E S S++CS C R GHN +TC
Subjt:  LNLDTYSYVFEFYYRETLSATYNGCIQLVGSDFDWRVVDSVMKILPPVFKRQARRPRKQRIPYVREFSSSTRCSNCNRKGHNSKTC

XP_038896605.1 uncharacterized protein LOC120084863 [Benincasa hispida]6.4e-2057.3Show/hide
Query:  MLNLDTYSYVFEFYYRETLSATYNGCIQLVGSDFDWRVVDSVMKILPPVFKRQARRPRKQRIPYVREF-SSSTRCSNCNRKGHNSKTCK
        +LN+D YSY+  +YY   LS TY GC++ VG   +WRV+D  ++ LPP+FK  ARRP+KQRIP V E  SSS RCS C+ KGHNS+TCK
Subjt:  MLNLDTYSYVFEFYYRETLSATYNGCIQLVGSDFDWRVVDSVMKILPPVFKRQARRPRKQRIPYVREF-SSSTRCSNCNRKGHNSKTCK

XP_038904248.1 uncharacterized protein LOC120090597 [Benincasa hispida]9.3e-1956.18Show/hide
Query:  MLNLDTYSYVFEFYYRETLSATYNGCIQLVGSDFDWRVVDSVMKILPPVFKRQARRPRKQRIPYVREF-SSSTRCSNCNRKGHNSKTCK
        +LN+D YSYV  +YY  TLS TY GC++ +G   +WRV+D  ++ LPP+FKR A  P+KQRIP   E  SSS RCS C+ KGHNS+TCK
Subjt:  MLNLDTYSYVFEFYYRETLSATYNGCIQLVGSDFDWRVVDSVMKILPPVFKRQARRPRKQRIPYVREF-SSSTRCSNCNRKGHNSKTCK

TrEMBL top hitse value%identityAlignment
A0A1S4DWH2 uncharacterized protein LOC1079908628.5e-1852.33Show/hide
Query:  LNLDTYSYVFEFYYRETLSATYNGCIQLVGSDFDWRVVDSVMKILPPVFKRQARRPRKQRIPYVREFSSSTRCSNCNRKGHNSKTC
        LNL+ Y++V ++YY   LSATY G ++ +G+  DW VV+    ILPPVF+R A RPRK+RIP + E S S++CS C R GHN +TC
Subjt:  LNLDTYSYVFEFYYRETLSATYNGCIQLVGSDFDWRVVDSVMKILPPVFKRQARRPRKQRIPYVREFSSSTRCSNCNRKGHNSKTC

A0A5A7SVB1 ZnF_PMZ domain-containing protein9.4e-1751.16Show/hide
Query:  LNLDTYSYVFEFYYRETLSATYNGCIQLVGSDFDWRVVDSVMKILPPVFKRQARRPRKQRIPYVREFSSSTRCSNCNRKGHNSKTC
        LNL+ Y++V ++YY   LSATY G ++ + +  DW VV+    ILPPVF+R A RPRK+RIP + E S S++CS C R GHN +TC
Subjt:  LNLDTYSYVFEFYYRETLSATYNGCIQLVGSDFDWRVVDSVMKILPPVFKRQARRPRKQRIPYVREFSSSTRCSNCNRKGHNSKTC

A0A5A7TVL2 ZnF_PMZ domain-containing protein1.9e-1752.33Show/hide
Query:  LNLDTYSYVFEFYYRETLSATYNGCIQLVGSDFDWRVVDSVMKILPPVFKRQARRPRKQRIPYVREFSSSTRCSNCNRKGHNSKTC
        LNL+ Y++V ++YY   LSATY G ++ +G+  DW VV+    ILPPVF+R A RPRK+RIP + E S S++CS C R GHN +TC
Subjt:  LNLDTYSYVFEFYYRETLSATYNGCIQLVGSDFDWRVVDSVMKILPPVFKRQARRPRKQRIPYVREFSSSTRCSNCNRKGHNSKTC

A0A5D3BVP4 SWIM-type domain-containing protein1.4e-1751.72Show/hide
Query:  LNLDTYSYVFEFYYRETLSATYNGCIQLVGSDFDWRVVDSVMKILPPVFKRQARRPRKQRIPYVREFSSSTRCSNCNRKGHNSKTCK
        LNL+ Y++V ++YY   LSATY G ++ +G+  DW VV+    ILPPVF+R A RPRK+RIP + E S S++CS C R GHN +TC+
Subjt:  LNLDTYSYVFEFYYRETLSATYNGCIQLVGSDFDWRVVDSVMKILPPVFKRQARRPRKQRIPYVREFSSSTRCSNCNRKGHNSKTCK

A0A5D3C7L7 Uncharacterized protein3.3e-3888.04Show/hide
Query:  MLNLDTYSYVFEFYYRETLSATYNGCIQLVGSDFDWRVVDSVMKILPPVFKRQARRPRKQRIPYVREFSSSTRCSNCNRKGHNSKTCKQGKV
        MLNLDTYSYV EFYYRETLS TYNGCIQ VGS FDWRVVDSVMKILPPVFKRQA RP KQRIP V EF+SST+CSNCNRKGHNS+TCKQGKV
Subjt:  MLNLDTYSYVFEFYYRETLSATYNGCIQLVGSDFDWRVVDSVMKILPPVFKRQARRPRKQRIPYVREFSSSTRCSNCNRKGHNSKTCKQGKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAACTTAGATACCTATTCTTATGTATTTGAGTTTTATTATAGAGAAACACTATCAGCAACATACAATGGTTGTATTCAACTTGTTGGATCTGATTTTGATTGGAG
AGTTGTAGATTCTGTCATGAAAATATTACCTCCAGTTTTTAAACGGCAGGCTAGAAGACCAAGAAAACAAAGAATTCCATATGTTAGGGAATTTAGTAGTTCAACCAGAT
GTTCCAATTGTAATCGTAAAGGACATAATAGTAAGACTTGTAAGCAAGGCAAGGTTTGA
mRNA sequenceShow/hide mRNA sequence
TCCCATATATAAAGATAACAATTTATCTATTCCTGTCTCAGATAGGAACTGATAGATTAATATATATATATATATATATATATATATATATATATATATATTGTATATAT
GATGTATACAAAGGTTGGAATATATTTCTTCTTATGTTATTAATTGTCTTTATTTGTGTTAGGTATTAGGTTGATCCAATAAGTACAACTGAATACCAAGTAACGGATGC
AAATCAACAGTTTATTGTGAAGTTAAATGTGGGATGTTGTAGTTGCCGAGTATGAGATGTTGAAGAAATTCCTTGTGCACATGCTCTTGCTCTTCTACAAATGCTTAACT
TAGATACCTATTCTTATGTATTTGAGTTTTATTATAGAGAAACACTATCAGCAACATACAATGGTTGTATTCAACTTGTTGGATCTGATTTTGATTGGAGAGTTGTAGAT
TCTGTCATGAAAATATTACCTCCAGTTTTTAAACGGCAGGCTAGAAGACCAAGAAAACAAAGAATTCCATATGTTAGGGAATTTAGTAGTTCAACCAGATGTTCCAATTG
TAATCGTAAAGGACATAATAGTAAGACTTGTAAGCAAGGCAAGGTTTGAACAATTAATGAAAATGCGTACTATCTTTCTTTCATTATTATGTATACACGTTTGATATTAA
ATTTGATGGAGAGTTGTTATCATTTAGACATTAGATATATAAACGATCGCTTAATACTTTTTATGTTTATTAAGAAGAT
Protein sequenceShow/hide protein sequence
MLNLDTYSYVFEFYYRETLSATYNGCIQLVGSDFDWRVVDSVMKILPPVFKRQARRPRKQRIPYVREFSSSTRCSNCNRKGHNSKTCKQGKV