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MELO3C035121 (gene) of Melon (DHL92) v4 genome

Gene IDMELO3C035121
OrganismCucumis melo DHL92 (Melon (DHL92) v4)
DescriptionRibonuclease H
Genome locationchr11:22315599..22324040
RNA-Seq ExpressionMELO3C035121
SyntenyMELO3C035121
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR039894 - tRNA pseudouridine synthase Pus10-like
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]8.9e-2788.89Show/hide
Query:  GATYQRIMQRIFDDILHKHVECYVDDLVVKSKKKCDHLKDLKLVLNRLWKYQLRMNPLKHLSGLTSGKFLGF
        GATYQR MQRIFDD+LHKHVECYVDDLVVKSKKKCDHLKDLKLVL+RL KYQLRMNPLK   G+TSGKFLGF
Subjt:  GATYQRIMQRIFDDILHKHVECYVDDLVVKSKKKCDHLKDLKLVLNRLWKYQLRMNPLKHLSGLTSGKFLGF
KAA0057578.1 uncharacterized protein E6C27_scaffold497G00500 [Cucumis melo var. makuwa]1.2e-2687.5Show/hide
Query:  GATYQRIMQRIFDDILHKHVECYVDDLVVKSKKKCDHLKDLKLVLNRLWKYQLRMNPLKHLSGLTSGKFLGF
        GATYQR MQRIFDD+LHKH+ECYVDDLVVKSKKKCDHLKDLKLVL+RL KYQLRMNPLK   G+TSGKFLGF
Subjt:  GATYQRIMQRIFDDILHKHVECYVDDLVVKSKKKCDHLKDLKLVLNRLWKYQLRMNPLKHLSGLTSGKFLGF
TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]1.2e-2687.5Show/hide
Query:  GATYQRIMQRIFDDILHKHVECYVDDLVVKSKKKCDHLKDLKLVLNRLWKYQLRMNPLKHLSGLTSGKFLGF
        GATYQR MQRIFDD+LHKH+ECYVDDLVVKSKKKCDHLKDLKLVL+RL KYQLRMNPLK   G+TSGKFLGF
Subjt:  GATYQRIMQRIFDDILHKHVECYVDDLVVKSKKKCDHLKDLKLVLNRLWKYQLRMNPLKHLSGLTSGKFLGF
TYK16275.1 uncharacterized protein E5676_scaffold21G00440 [Cucumis melo var. makuwa]8.9e-2788.89Show/hide
Query:  GATYQRIMQRIFDDILHKHVECYVDDLVVKSKKKCDHLKDLKLVLNRLWKYQLRMNPLKHLSGLTSGKFLGF
        GATYQR MQRIFDD+LHKHVECYVDDLVVKSKKKCDHLKDLKLVL+RL KYQLRMNPLK   G+TSGKFLGF
Subjt:  GATYQRIMQRIFDDILHKHVECYVDDLVVKSKKKCDHLKDLKLVLNRLWKYQLRMNPLKHLSGLTSGKFLGF
TYK18071.1 uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa]8.9e-2788.89Show/hide
Query:  GATYQRIMQRIFDDILHKHVECYVDDLVVKSKKKCDHLKDLKLVLNRLWKYQLRMNPLKHLSGLTSGKFLGF
        GATYQR MQRIFDD+LHKHVECYVDDLVVKSKKKCDHLKDLKLVL+RL KYQLRMNPLK   G+TSGKFLGF
Subjt:  GATYQRIMQRIFDDILHKHVECYVDDLVVKSKKKCDHLKDLKLVLNRLWKYQLRMNPLKHLSGLTSGKFLGF
TrEMBL top hitse value%identityAlignment
A0A5A7TZU9 Ribonuclease H4.3e-2788.89Show/hide
Query:  GATYQRIMQRIFDDILHKHVECYVDDLVVKSKKKCDHLKDLKLVLNRLWKYQLRMNPLKHLSGLTSGKFLGF
        GATYQR MQRIFDD+LHKHVECYVDDLVVKSKKKCDHLKDLKLVL+RL KYQLRMNPLK   G+TSGKFLGF
Subjt:  GATYQRIMQRIFDDILHKHVECYVDDLVVKSKKKCDHLKDLKLVLNRLWKYQLRMNPLKHLSGLTSGKFLGF
A0A5A7VKJ9 RNase H domain-containing protein5.6e-2786.3Show/hide
Query:  LGATYQRIMQRIFDDILHKHVECYVDDLVVKSKKKCDHLKDLKLVLNRLWKYQLRMNPLKHLSGLTSGKFLGF
        +GATYQR MQRIFDD+LHKH+ECYVDDLVVKSKKKCDHLKDLKLVL+RL KYQLRMNPLK   G+TSGKFLGF
Subjt:  LGATYQRIMQRIFDDILHKHVECYVDDLVVKSKKKCDHLKDLKLVLNRLWKYQLRMNPLKHLSGLTSGKFLGF
A0A5D3CUG5 Ty3-gypsy retrotransposon protein5.6e-2787.5Show/hide
Query:  GATYQRIMQRIFDDILHKHVECYVDDLVVKSKKKCDHLKDLKLVLNRLWKYQLRMNPLKHLSGLTSGKFLGF
        GATYQR MQRIFDD+LHKH+ECYVDDLVVKSKKKCDHLKDLKLVL+RL KYQLRMNPLK   G+TSGKFLGF
Subjt:  GATYQRIMQRIFDDILHKHVECYVDDLVVKSKKKCDHLKDLKLVLNRLWKYQLRMNPLKHLSGLTSGKFLGF
A0A5D3CXS1 Uncharacterized protein4.3e-2788.89Show/hide
Query:  GATYQRIMQRIFDDILHKHVECYVDDLVVKSKKKCDHLKDLKLVLNRLWKYQLRMNPLKHLSGLTSGKFLGF
        GATYQR MQRIFDD+LHKHVECYVDDLVVKSKKKCDHLKDLKLVL+RL KYQLRMNPLK   G+TSGKFLGF
Subjt:  GATYQRIMQRIFDDILHKHVECYVDDLVVKSKKKCDHLKDLKLVLNRLWKYQLRMNPLKHLSGLTSGKFLGF
A0A5D3D1E5 Ribonuclease H4.3e-2788.89Show/hide
Query:  GATYQRIMQRIFDDILHKHVECYVDDLVVKSKKKCDHLKDLKLVLNRLWKYQLRMNPLKHLSGLTSGKFLGF
        GATYQR MQRIFDD+LHKHVECYVDDLVVKSKKKCDHLKDLKLVL+RL KYQLRMNPLK   G+TSGKFLGF
Subjt:  GATYQRIMQRIFDDILHKHVECYVDDLVVKSKKKCDHLKDLKLVLNRLWKYQLRMNPLKHLSGLTSGKFLGF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G20410.1 Pseudouridine synthase family protein1.1e-1458.46Show/hide
Query:  VQMLGSGRLFLVEIQNACLLAFEVIINELQSKINSSENKLVGVRNLKVVGSEGWALVQEGEAEKQ
        V+MLGSGR FL+E+QN+  L  E  + E++ KIN SE KLVGV++LK +GS+ WA+++EGEAEKQ
Subjt:  VQMLGSGRLFLVEIQNACLLAFEVIINELQSKINSSENKLVGVRNLKVVGSEGWALVQEGEAEKQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTCGTCAGCCCCTTTTCTTCGACGACCACCCACCGCAGCCAACCATGCTTGCAAGTATATCGATCCTTGTTCACTGGAAAATGATGGTGTTACGTTTCAAGTTCA
AATGTTGGGTTCAGGTAGACTTTTCTTAGTTGAGATACAAAACGCATGTCTTCTCGCATTTGAGGTGATAATAAATGAATTACAGTCAAAGATAAATAGCTCGGAGAATA
AATTGGTTGGCGTAAGAAATCTGAAAGTTGTAGGTAGCGAGGGTTGGGCCCTGGTTCAAGAAGGAGAAGCAGAGAAGCAGATTGATACAAGAAAACCATACTCACAGGCC
GAGTTAGATGAGGTGCGGGTTGAGTTGGTTGAGTTTTTGGGTGCCACATACCAGCGTATTATGCAAAGGATCTTTGATGATATACTACATAAACATGTTGAATGTTATGT
TGATGATCTTGTAGTGAAATCCAAGAAGAAATGTGACCACCTGAAAGACCTGAAGCTTGTCCTTAATCGCCTATGGAAATATCAACTTAGAATGAACCCCCTTAAGCATT
TATCTGGCTTGACCTCAGGAAAGTTTCTGGGCTTCGCTCGACTGTTTCCACCCAAACCCCGCGATAGACACCGACGTACCCTCGCAGTTCAGTTGCTCGTCGTCGTTCCT
TTGTTCGCACCATCGCCTCTCCTTCCTCGTGTACCGTCCAACGAAACCAGCTGCTACACCGCGTTTCTCCTTCAGCCACTGTGCGTGTTAACCCATCGGAGATCGCACCA
CCATTGGTTGTCGGGAGATTTTAGGGCTGAAAGAGGCCGTGATCAGAGATCCGAGAACTTGAACCTAGGTGAGGATGTGGATGGAGAATTATATGAAGCACATGTGAGCT
ATTCCCGGGCCGTATACTTAGTATGCTATCGTGATTGGATTGGATTGGATGGATGTTGTTACTGTGGTAGATGCCTCGCCATGGTTGGATTGGCTACAGGTTATTGGTGG
ACTAATGGCCATGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGTCGTCAGCCCCTTTTCTTCGACGACCACCCACCGCAGCCAACCATGCTTGCAAGTATATCGATCCTTGTTCACTGGAAAATGATGGTGTTACGTTTCAAGTTCA
AATGTTGGGTTCAGGTAGACTTTTCTTAGTTGAGATACAAAACGCATGTCTTCTCGCATTTGAGGTGATAATAAATGAATTACAGTCAAAGATAAATAGCTCGGAGAATA
AATTGGTTGGCGTAAGAAATCTGAAAGTTGTAGGTAGCGAGGGTTGGGCCCTGGTTCAAGAAGGAGAAGCAGAGAAGCAGATTGATACAAGAAAACCATACTCACAGGCC
GAGTTAGATGAGGTGCGGGTTGAGTTGGTTGAGTTTTTGGGTGCCACATACCAGCGTATTATGCAAAGGATCTTTGATGATATACTACATAAACATGTTGAATGTTATGT
TGATGATCTTGTAGTGAAATCCAAGAAGAAATGTGACCACCTGAAAGACCTGAAGCTTGTCCTTAATCGCCTATGGAAATATCAACTTAGAATGAACCCCCTTAAGCATT
TATCTGGCTTGACCTCAGGAAAGTTTCTGGGCTTCGCTCGACTGTTTCCACCCAAACCCCGCGATAGACACCGACGTACCCTCGCAGTTCAGTTGCTCGTCGTCGTTCCT
TTGTTCGCACCATCGCCTCTCCTTCCTCGTGTACCGTCCAACGAAACCAGCTGCTACACCGCGTTTCTCCTTCAGCCACTGTGCGTGTTAACCCATCGGAGATCGCACCA
CCATTGGTTGTCGGGAGATTTTAGGGCTGAAAGAGGCCGTGATCAGAGATCCGAGAACTTGAACCTAGGTGAGGATGTGGATGGAGAATTATATGAAGCACATGTGAGCT
ATTCCCGGGCCGTATACTTAGTATGCTATCGTGATTGGATTGGATTGGATGGATGTTGTTACTGTGGTAGATGCCTCGCCATGGTTGGATTGGCTACAGGTTATTGGTGG
ACTAATGGCCATGAGTAA
Protein sequenceShow/hide protein sequence
MLSSAPFLRRPPTAANHACKYIDPCSLENDGVTFQVQMLGSGRLFLVEIQNACLLAFEVIINELQSKINSSENKLVGVRNLKVVGSEGWALVQEGEAEKQIDTRKPYSQA
ELDEVRVELVEFLGATYQRIMQRIFDDILHKHVECYVDDLVVKSKKKCDHLKDLKLVLNRLWKYQLRMNPLKHLSGLTSGKFLGFARLFPPKPRDRHRRTLAVQLLVVVP
LFAPSPLLPRVPSNETSCYTAFLLQPLCVLTHRRSHHHWLSGDFRAERGRDQRSENLNLGEDVDGELYEAHVSYSRAVYLVCYRDWIGLDGCCYCGRCLAMVGLATGYWW
TNGHE