CuGenDBv2

Gene ID	MELO3C035178
Organism	Cucumis melo DHL92 (Melon (DHL92) v4)
Description	Retrovirus-related pol polyprotein from transposon tnt 1-94
Genome location	chr11:27269651..27270952
RNA-Seq Expression	MELO3C035178
Synteny	MELO3C035178
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0008233 - peptidase activity (molecular function)
InterPro domains	IPR015410 - Domain of unknown function DUF1985

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031317.1 uncharacterized protein E6C27_scaffold139G00700 [Cucumis melo var. makuwa]

4.8e-40

91.35

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Query:  EEIEDKEETEEDDNHRENKSKMVHDTSNKVKVVQEKTKVKIMKIATNIEKTRPKRQPKPSKKVLEIVKEQKNARGKKNDSPKPTRHSPRIKDLAPSFDLQ
        +EIED EETEEDDNHRENKSKMVHDTSNKVKVVQEK KVKIM+IATNIEK RPKRQPKPSKKVLE VKEQKN RGKKNDSPKPTR+SPRI+DLAPSFDLQ
Subjt:  EEIEDKEETEEDDNHRENKSKMVHDTSNKVKVVQEKTKVKIMKIATNIEKTRPKRQPKPSKKVLEIVKEQKNARGKKNDSPKPTRHSPRIKDLAPSFDLQ

Query:  ISQL
        ISQL
Subjt:  ISQL

KAA0039507.1 hypothetical protein E6C27_scaffold64G003290 [Cucumis melo var. makuwa]

1.4e-39

93.14

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Query:  EEIEDKEETEEDDNHRENKSKMVHDTSNKVKVVQEKTKVKIMKIATNIEKTRPKRQPKPSKKVLEIVKEQKNARGKKNDSPKPTRHSPRIKDLAPSFDLQ
        +EIED EETEEDDNHRENKSKMVHDTSNKVKVVQEK KVKIM+IATNIEKTRPKRQ KPSKKVLE VKEQKN RGKKNDSPKPTRHSPRIKDLAPSFDLQ
Subjt:  EEIEDKEETEEDDNHRENKSKMVHDTSNKVKVVQEKTKVKIMKIATNIEKTRPKRQPKPSKKVLEIVKEQKNARGKKNDSPKPTRHSPRIKDLAPSFDLQ

Query:  IS
        IS
Subjt:  IS

KAA0065297.1 hypothetical protein E6C27_scaffold1023G00110 [Cucumis melo var. makuwa]

2.2e-40

91.35

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Query:  EEIEDKEETEEDDNHRENKSKMVHDTSNKVKVVQEKTKVKIMKIATNIEKTRPKRQPKPSKKVLEIVKEQKNARGKKNDSPKPTRHSPRIKDLAPSFDLQ
        +EIED EETEEDDNHRENKSKMVHDTSNKVKVVQEK KVKIM+IATNIEK RPKRQPKPSKKVLE VKEQKN RGKKNDSPKPT+HSPRI+DLAPSFDLQ
Subjt:  EEIEDKEETEEDDNHRENKSKMVHDTSNKVKVVQEKTKVKIMKIATNIEKTRPKRQPKPSKKVLEIVKEQKNARGKKNDSPKPTRHSPRIKDLAPSFDLQ

Query:  ISQL
        ISQL
Subjt:  ISQL

TYK15261.1 hypothetical protein E5676_scaffold892G00380 [Cucumis melo var. makuwa]

4.8e-40

91.35

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Query:  EEIEDKEETEEDDNHRENKSKMVHDTSNKVKVVQEKTKVKIMKIATNIEKTRPKRQPKPSKKVLEIVKEQKNARGKKNDSPKPTRHSPRIKDLAPSFDLQ
        +EIED EETEEDDNHRENKSKMVHDTSNKVKVVQEK KVKIM+IATNIEK RPKRQPKPSKKVLE VKEQKN RGKKNDSPKPTR+SPRI+DLAPSFDLQ
Subjt:  EEIEDKEETEEDDNHRENKSKMVHDTSNKVKVVQEKTKVKIMKIATNIEKTRPKRQPKPSKKVLEIVKEQKNARGKKNDSPKPTRHSPRIKDLAPSFDLQ

Query:  ISQL
        ISQL
Subjt:  ISQL

TYK22453.1 uncharacterized protein E5676_scaffold3009G00010 [Cucumis melo var. makuwa]

4.8e-40

91.35

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Query:  EEIEDKEETEEDDNHRENKSKMVHDTSNKVKVVQEKTKVKIMKIATNIEKTRPKRQPKPSKKVLEIVKEQKNARGKKNDSPKPTRHSPRIKDLAPSFDLQ
        +EIED EETEEDDNHRENKSKMVHDTSNKVKVVQEK KVKIM+IATNIEK RPKRQPKPSKKVLE VKEQKN RGKKNDSPKPTR+SPRI+DLAPSFDLQ
Subjt:  EEIEDKEETEEDDNHRENKSKMVHDTSNKVKVVQEKTKVKIMKIATNIEKTRPKRQPKPSKKVLEIVKEQKNARGKKNDSPKPTRHSPRIKDLAPSFDLQ

Query:  ISQL
        ISQL
Subjt:  ISQL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TDE0 Uncharacterized protein

6.8e-40

93.14

Show/hide

Query:  EEIEDKEETEEDDNHRENKSKMVHDTSNKVKVVQEKTKVKIMKIATNIEKTRPKRQPKPSKKVLEIVKEQKNARGKKNDSPKPTRHSPRIKDLAPSFDLQ
        +EIED EETEEDDNHRENKSKMVHDTSNKVKVVQEK KVKIM+IATNIEKTRPKRQ KPSKKVLE VKEQKN RGKKNDSPKPTRHSPRIKDLAPSFDLQ
Subjt:  EEIEDKEETEEDDNHRENKSKMVHDTSNKVKVVQEKTKVKIMKIATNIEKTRPKRQPKPSKKVLEIVKEQKNARGKKNDSPKPTRHSPRIKDLAPSFDLQ

Query:  IS
        IS
Subjt:  IS

A0A5A7VDY1 Uncharacterized protein

1.0e-40

91.35

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Query:  EEIEDKEETEEDDNHRENKSKMVHDTSNKVKVVQEKTKVKIMKIATNIEKTRPKRQPKPSKKVLEIVKEQKNARGKKNDSPKPTRHSPRIKDLAPSFDLQ
        +EIED EETEEDDNHRENKSKMVHDTSNKVKVVQEK KVKIM+IATNIEK RPKRQPKPSKKVLE VKEQKN RGKKNDSPKPT+HSPRI+DLAPSFDLQ
Subjt:  EEIEDKEETEEDDNHRENKSKMVHDTSNKVKVVQEKTKVKIMKIATNIEKTRPKRQPKPSKKVLEIVKEQKNARGKKNDSPKPTRHSPRIKDLAPSFDLQ

Query:  ISQL
        ISQL
Subjt:  ISQL

A0A5A7VIA9 Uncharacterized protein

2.3e-40

91.35

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Query:  EEIEDKEETEEDDNHRENKSKMVHDTSNKVKVVQEKTKVKIMKIATNIEKTRPKRQPKPSKKVLEIVKEQKNARGKKNDSPKPTRHSPRIKDLAPSFDLQ
        +EIED EETEEDDNHRENKSKMVHDTSNKVKVVQEK KVKIM+IATNIEK RPKRQPKPSKKVLE VKEQKN RGKKNDSPKPTR+SPRI+DLAPSFDLQ
Subjt:  EEIEDKEETEEDDNHRENKSKMVHDTSNKVKVVQEKTKVKIMKIATNIEKTRPKRQPKPSKKVLEIVKEQKNARGKKNDSPKPTRHSPRIKDLAPSFDLQ

Query:  ISQL
        ISQL
Subjt:  ISQL

A0A5D3CTS8 Uncharacterized protein

2.3e-40

91.35

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Query:  EEIEDKEETEEDDNHRENKSKMVHDTSNKVKVVQEKTKVKIMKIATNIEKTRPKRQPKPSKKVLEIVKEQKNARGKKNDSPKPTRHSPRIKDLAPSFDLQ
        +EIED EETEEDDNHRENKSKMVHDTSNKVKVVQEK KVKIM+IATNIEK RPKRQPKPSKKVLE VKEQKN RGKKNDSPKPTR+SPRI+DLAPSFDLQ
Subjt:  EEIEDKEETEEDDNHRENKSKMVHDTSNKVKVVQEKTKVKIMKIATNIEKTRPKRQPKPSKKVLEIVKEQKNARGKKNDSPKPTRHSPRIKDLAPSFDLQ

Query:  ISQL
        ISQL
Subjt:  ISQL

A0A5D3DFX6 Uncharacterized protein

2.3e-40

91.35

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Query:  EEIEDKEETEEDDNHRENKSKMVHDTSNKVKVVQEKTKVKIMKIATNIEKTRPKRQPKPSKKVLEIVKEQKNARGKKNDSPKPTRHSPRIKDLAPSFDLQ
        +EIED EETEEDDNHRENKSKMVHDTSNKVKVVQEK KVKIM+IATNIEK RPKRQPKPSKKVLE VKEQKN RGKKNDSPKPTR+SPRI+DLAPSFDLQ
Subjt:  EEIEDKEETEEDDNHRENKSKMVHDTSNKVKVVQEKTKVKIMKIATNIEKTRPKRQPKPSKKVLEIVKEQKNARGKKNDSPKPTRHSPRIKDLAPSFDLQ

Query:  ISQL
        ISQL
Subjt:  ISQL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCAGATCTGTTCTAGATGGATAAGAAAAAAGATATTATGGAAAGTGAACCAAATGAAAAATGTGCAAAAAGTCTATCAATTAGCACACTTGATTAGAAGACAATGCGT
CTCAACGGACAACAATGTTCTTCTTTTCAACATCGAAGGTAACATTGTGGAGTTTGGACTGCGAGATTTTTGTTTGATTACAGGATTAAATTGTGGTGAATATCCTATAG
AAGAGATTGAAGATAAAGAGGAAACCGAGGAAGATGATAATCATCGTGAAAATAAGTCAAAAATGGTGCATGACACATCAAACAAAGTGAAGGTTGTTCAAGAAAAGACA
AAAGTGAAAATTATGAAAATAGCGACGAATATTGAAAAAACTAGGCCGAAGAGACAACCTAAACCATCTAAGAAAGTGTTGGAGATTGTAAAAGAACAAAAGAATGCAAG
AGGCAAGAAGAATGATTCTCCAAAACCAACAAGACATTCTCCTAGAATAAAGGATCTAGCACCTAGTTTTGATTTGCAAATCTCTCAATTATAA

mRNA sequence

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Protein sequence

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MQICSRWIRKKILWKVNQMKNVQKVYQLAHLIRRQCVSTDNNVLLFNIEGNIVEFGLRDFCLITGLNCGEYPIEEIEDKEETEEDDNHRENKSKMVHDTSNKVKVVQEKT
KVKIMKIATNIEKTRPKRQPKPSKKVLEIVKEQKNARGKKNDSPKPTRHSPRIKDLAPSFDLQISQL

MELO3C035178 (gene) of Melon (DHL92) v4 genome